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  1. Article ; Online: Income differences in COVID-19 incidence and severity in Finland among people with foreign and native background: A population-based cohort study of individuals nested within households.

    Saarinen, Sanni / Moustgaard, Heta / Remes, Hanna / Sallinen, Riikka / Martikainen, Pekka

    PLoS medicine

    2022  Volume 19, Issue 8, Page(s) e1004038

    Abstract: Background: Although intrahousehold transmission is a key source of Coronavirus Disease 2019 (COVID-19) infections, studies to date have not analysed socioeconomic risk factors on the household level or household clustering of severe COVID-19. We ... ...

    Abstract Background: Although intrahousehold transmission is a key source of Coronavirus Disease 2019 (COVID-19) infections, studies to date have not analysed socioeconomic risk factors on the household level or household clustering of severe COVID-19. We quantify household income differences and household clustering of COVID-19 incidence and severity.
    Methods and findings: We used register-based cohort data with individual-level linkage across various administrative registers for the total Finnish population living in working-age private households (N = 4,315,342). Incident COVID-19 cases (N = 38,467) were identified from the National Infectious Diseases Register from 1 July 2020 to 22 February 2021. Severe cases (N = 625) were defined as having at least 3 consecutive days of inpatient care with a COVID-19 diagnosis and identified from the Care Register for Health Care between 1 July 2020 and 31 December 2020. We used 2-level logistic regression with individuals nested within households to estimate COVID-19 incidence and case severity among those infected. Adjusted for age, sex, and regional characteristics, the incidence of COVID-19 was higher (odds ratio [OR] 1.67, 95% CI 1.58 to 1.77, p < 0.001, 28.4% of infections) among individuals in the lowest household income quintile than among those in the highest quintile (18.9%). The difference attenuated (OR 1.23, 1.16 to 1.30, p < 0.001) when controlling for foreign background but not when controlling for other household-level risk factors. In fact, we found a clear income gradient in incidence only among people with foreign background but none among those with native background. The odds of severe illness among those infected were also higher in the lowest income quintile (OR 1.97, 1.52 to 2.56, p < 0.001, 28.0% versus 21.6% in the highest quintile), but this difference was fully attenuated (OR 1.08, 0.77 to 1.52, p = 0.64) when controlling for other individual-level risk factors-comorbidities, occupational status, and foreign background. Both incidence and severity were strongly clustered within households: Around 77% of the variation in incidence and 20% in severity were attributable to differences between households. The main limitation of our study was that the test uptake for COVID-19 may have differed between population subgroups.
    Conclusions: Low household income appears to be a strong risk factor for both COVID-19 incidence and case severity, but the income differences are largely driven by having foreign background. The strong household clustering of incidence and severity highlights the importance of household context in the prevention and mitigation of COVID-19 outcomes.
    MeSH term(s) COVID-19/epidemiology ; COVID-19 Testing ; Cohort Studies ; Family Characteristics ; Finland/epidemiology ; Humans ; Incidence
    Language English
    Publishing date 2022-08-10
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2185925-5
    ISSN 1549-1676 ; 1549-1277
    ISSN (online) 1549-1676
    ISSN 1549-1277
    DOI 10.1371/journal.pmed.1004038
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Book ; Online: Little Tricky Logic

    Greenman, Ben / Saarinen, Sam / Nelson, Tim / Krishnamurthi, Shriram

    Misconceptions in the Understanding of LTL

    2022  

    Abstract: Context: Linear Temporal Logic (LTL) has been used widely in verification. Its importance and popularity have only grown with the revival of temporal logic synthesis, and with new uses of LTL in robotics and planning activities. All these uses demand ... ...

    Abstract Context: Linear Temporal Logic (LTL) has been used widely in verification. Its importance and popularity have only grown with the revival of temporal logic synthesis, and with new uses of LTL in robotics and planning activities. All these uses demand that the user have a clear understanding of what an LTL specification means. Inquiry: Despite the growing use of LTL, no studies have investigated the misconceptions users actually have in understanding LTL formulas. This paper addresses the gap with a first study of LTL misconceptions. Approach: We study researchers' and learners' understanding of LTL in four rounds (three written surveys, one talk-aloud) spread across a two-year timeframe. Concretely, we decompose "understanding LTL" into three questions. A person reading a spec needs to understand what it is saying, so we study the mapping from LTL to English. A person writing a spec needs to go in the other direction, so we study English to LTL. However, misconceptions could arise from two sources: a misunderstanding of LTL's syntax or of its underlying semantics. Therefore, we also study the relationship between formulas and specific traces. Knowledge: We find several misconceptions that have consequences for learners, tool builders, and designers of new property languages. These findings are already resulting in changes to the Alloy modeling language. We also find that the English to LTL direction was the most common source of errors; unfortunately, this is the critical "authoring" direction in which a subtle mistake can lead to a faulty system. We contribute study instruments that are useful for training learners (whether academic or industrial) who are getting acquainted with LTL, and we provide a code book to assist in the analysis of responses to similar-style questions. Grounding: Our findings are grounded in the responses to our survey rounds. Round 1 used Quizius to identify misconceptions among learners in a way that reduces the threat of expert blind spots. Rounds 2 and 3 confirm that both additional ...
    Keywords Computer Science - Programming Languages
    Subject code 420
    Publishing date 2022-11-03
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Book ; Article ; Online: Etäopetuksesta arkipäivää

    Saarinen, Susanna / Sintonen, Sanna

    32504

    TAMKin opettajien kokemuksia poikkeuskeväästä

    2020  

    Keywords etäopetus ; COVID-19 ; kokemukset ; kyselytutkimus ; tulokset ; opettajat ; Tampereen ammattikorkeakoulu ; covid19
    Language Finnish
    Publisher Tampereen ammattikorkeakoulu
    Publishing country fi
    Document type Book ; Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Ground state cooling of an ultracoherent electromechanical system.

    Seis, Yannick / Capelle, Thibault / Langman, Eric / Saarinen, Sampo / Planz, Eric / Schliesser, Albert

    Nature communications

    2022  Volume 13, Issue 1, Page(s) 1507

    Abstract: Cavity electromechanics relies on parametric coupling between microwave and mechanical modes to manipulate the mechanical quantum state, and provide a coherent interface between different parts of hybrid quantum systems. High coherence of the mechanical ... ...

    Abstract Cavity electromechanics relies on parametric coupling between microwave and mechanical modes to manipulate the mechanical quantum state, and provide a coherent interface between different parts of hybrid quantum systems. High coherence of the mechanical mode is of key importance in such applications, in order to protect the quantum states it hosts from thermal decoherence. Here, we introduce an electromechanical system based around a soft-clamped mechanical resonator with an extremely high Q-factor (>10
    Language English
    Publishing date 2022-03-21
    Publishing country England
    Document type Journal Article
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-022-29115-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Characterization of clinicopathological features, treatment practices, and outcomes among Finnish advanced breast cancer patients in real-life clinical practice.

    Heinolainen, Krista / Saarinen, Silva / Vertuani, Simona / Ellonen, Antti / Karlsson, Antti / Utriainen, Meri / Carlqvist, Peter / Mandelin, Jami / Holm, Barbro

    Journal of cancer research and clinical oncology

    2023  Volume 149, Issue 11, Page(s) 9139–9149

    Abstract: Purpose: In recent years, several new targeted therapies have emerged for advanced breast cancer (aBC). However, real-life data specific to aBC and different breast cancer subtypes are scarce. This retrospective cohort study was designed to describe the ...

    Abstract Purpose: In recent years, several new targeted therapies have emerged for advanced breast cancer (aBC). However, real-life data specific to aBC and different breast cancer subtypes are scarce. This retrospective cohort study was designed to describe the distribution of aBC subtypes, incidence, treatment patterns, survival, and PIK3CA hotspot mutation frequency.
    Methods: The study included all patients in the Hospital District of Southwest Finland diagnosed with aBC between 2004 and 2013 and with a sample available in Auria Biobank. In addition to registry-based data collection, 161 HR+/HER2- aBCs were screened for PIK3CA mutations.
    Results: Altogether, 54.7% of the 444 patients included in the study had luminal B subtype. The smallest representations were in HR-/HER2+ (4.5%) and triple-negative (5.6%) subgroups. The percentage of aBC among all diagnosed breast cancers increased until 2010, after which it remained stable. The triple-negative cancers were associated with shorter median overall survival (5.5 months) compared to other subgroups (16.5-24.6 months). Most (84%) triple-negative cancers also metastasized during the first two years, whereas this was more evenly distributed over time in other subgroups. Of the HR+/HER2- tumors, 32.3% harbored a PIK3CA hotspot mutation. These patients, however, did not have inferior survival compared to patients with PIK3CA wild-type cancers.
    Conclusion: This study described real-world aBC subgroups and indicated that the clinical outcomes of subgroups vary. Although PIK3CA hotspot mutations did not lead to inferior survival, they are relevant as possible treatment targets. Overall, these data could be utilized to further evaluate the subgroup-specific medical needs in breast cancer.
    MeSH term(s) Humans ; Female ; Breast Neoplasms/therapy ; Breast Neoplasms/drug therapy ; Finland/epidemiology ; Retrospective Studies ; Mutation ; Class I Phosphatidylinositol 3-Kinases/genetics ; Receptor, ErbB-2/genetics
    Chemical Substances Class I Phosphatidylinositol 3-Kinases (EC 2.7.1.137) ; Receptor, ErbB-2 (EC 2.7.10.1)
    Language English
    Publishing date 2023-05-13
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 134792-5
    ISSN 1432-1335 ; 0171-5216 ; 0084-5353 ; 0943-9382
    ISSN (online) 1432-1335
    ISSN 0171-5216 ; 0084-5353 ; 0943-9382
    DOI 10.1007/s00432-023-04723-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: PDPR

    Brock, Pamela / Sevigny, Myriam / Liyanarachchi, Sandya / Comiskey, Daniel F / Li, Wei / Saarinen, Saila / Yilmaz, Ayse Selen / Nieminen, Anni I / Ringel, Matthew D / Peltomäki, Päivi / Ollila, Saara / Nieminen, Taina T

    Thyroid : official journal of the American Thyroid Association

    2024  

    Abstract: Background: ...

    Abstract Background:
    Language English
    Publishing date 2024-01-10
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1086044-7
    ISSN 1557-9077 ; 1050-7256
    ISSN (online) 1557-9077
    ISSN 1050-7256
    DOI 10.1089/thy.2023.0560
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: DNA-origami-directed virus capsid polymorphism.

    Seitz, Iris / Saarinen, Sharon / Kumpula, Esa-Pekka / McNeale, Donna / Anaya-Plaza, Eduardo / Lampinen, Vili / Hytönen, Vesa P / Sainsbury, Frank / Cornelissen, Jeroen J L M / Linko, Veikko / Huiskonen, Juha T / Kostiainen, Mauri A

    Nature nanotechnology

    2023  Volume 18, Issue 10, Page(s) 1205–1212

    Abstract: Viral capsids can adopt various geometries, most iconically characterized by icosahedral or helical symmetries. Importantly, precise control over the size and shape of virus capsids would have advantages in the development of new vaccines and delivery ... ...

    Abstract Viral capsids can adopt various geometries, most iconically characterized by icosahedral or helical symmetries. Importantly, precise control over the size and shape of virus capsids would have advantages in the development of new vaccines and delivery systems. However, current tools to direct the assembly process in a programmable manner are exceedingly elusive. Here we introduce a modular approach by demonstrating DNA-origami-directed polymorphism of single-protein subunit capsids. We achieve control over the capsid shape, size and topology by employing user-defined DNA origami nanostructures as binding and assembly platforms, which are efficiently encapsulated within the capsid. Furthermore, the obtained viral capsid coatings can shield the encapsulated DNA origami from degradation. Our approach is, moreover, not limited to a single type of capsomers and can also be applied to RNA-DNA origami structures to pave way for next-generation cargo protection and targeting strategies.
    MeSH term(s) Capsid/metabolism ; Capsid Proteins/genetics ; Capsid Proteins/analysis ; Capsid Proteins/chemistry ; Nanostructures/chemistry ; DNA/chemistry ; Virion
    Chemical Substances Capsid Proteins ; DNA (9007-49-2)
    Language English
    Publishing date 2023-07-17
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2254964-X
    ISSN 1748-3395 ; 1748-3387
    ISSN (online) 1748-3395
    ISSN 1748-3387
    DOI 10.1038/s41565-023-01443-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Post resuscitation care of out-of-hospital cardiac arrest patients in the Nordic countries: a questionnaire study.

    Saarinen, Sini / Castrén, Maaret / Virkkunen, Ilkka / Kämäräinen, Antti

    Scandinavian journal of trauma, resuscitation and emergency medicine

    2015  Volume 23, Page(s) 60

    Abstract: Background: Aim of this study was to compare post resuscitation care of out-of-hospital cardiac arrest (OHCA) patients in Nordic (Denmark, Finland, Iceland, Norway, Sweden) intensive care units (ICUs).: Methods: An online questionnaire was sent to ... ...

    Abstract Background: Aim of this study was to compare post resuscitation care of out-of-hospital cardiac arrest (OHCA) patients in Nordic (Denmark, Finland, Iceland, Norway, Sweden) intensive care units (ICUs).
    Methods: An online questionnaire was sent to Nordic ICUs in 2012 and was complemented by an additional one in 2014.
    Results: The first questionnaire was sent to 188 and the second one to 184 ICUs. Response rates were 51 % and 46 %. In 2012, 37 % of the ICUs treated all patients resuscitated from OHCA with targeted temperature management (TTM) at 33 °C. All OHCA patients admitted to the ICU were treated with TTM at 33 °C more often in Norway (69 %) compared to Finland (20 %) and Sweden (25 %), p 0.02 and 0.014. In 2014, 63 % of the ICUs still use TTM at 33 °C, but 33 % use TTM at 36 °C. Early coronary angiography (CAG) and possible percutaneous coronary intervention (PCI) was routinely provided for all survivors of OHCA in 39 % of the hospitals in 2012 and in 28 % of the hospitals in 2014. Routine CAG for all actively treated victims of OHCA was performed more frequently in Sweden (51 %) and in Norway (54 %) compared to Finland (13 %), p 0.014 and 0.042.
    Conclusions: Since 2012, TTM at 36 °C has been implemented in some ICUs, but TTM at 33 °C is used in majority of the ICUs. TTM at 33 or 36 °C and primary CAG are not routinely provided for all OHCA survivors and the criteria for these and ICU admission are variable. Best practices as a uniform approach to the optimal care of the resuscitated patient should be sought in the Nordic Countries.
    MeSH term(s) Cardiopulmonary Resuscitation/mortality ; Cardiopulmonary Resuscitation/standards ; Denmark ; Female ; Finland ; Health Care Surveys ; Hospital Mortality/trends ; Hospitalization/statistics & numerical data ; Humans ; Hypothermia, Induced ; Intensive Care Units ; Length of Stay ; Male ; Norway ; Out-of-Hospital Cardiac Arrest/mortality ; Out-of-Hospital Cardiac Arrest/therapy ; Outcome Assessment (Health Care) ; Risk Assessment ; Scandinavian and Nordic Countries ; Surveys and Questionnaires ; Survival Analysis ; Sweden
    Language English
    Publishing date 2015-08-22
    Publishing country England
    Document type Comparative Study ; Journal Article ; Multicenter Study
    ZDB-ID 2455990-8
    ISSN 1757-7241 ; 1757-7241
    ISSN (online) 1757-7241
    ISSN 1757-7241
    DOI 10.1186/s13049-015-0141-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Book ; Online: EgoBlur

    Raina, Nikhil / Somasundaram, Guruprasad / Zheng, Kang / Miglani, Sagar / Saarinen, Steve / Meissner, Jeff / Schwesinger, Mark / Pesqueira, Luis / Prasad, Ishita / Miller, Edward / Gupta, Prince / Yan, Mingfei / Newcombe, Richard / Ren, Carl / Parkhi, Omkar M

    Responsible Innovation in Aria

    2023  

    Abstract: Project Aria pushes the frontiers of Egocentric AI with large-scale real-world data collection using purposely designed glasses with privacy first approach. To protect the privacy of bystanders being recorded by the glasses, our research protocols are ... ...

    Abstract Project Aria pushes the frontiers of Egocentric AI with large-scale real-world data collection using purposely designed glasses with privacy first approach. To protect the privacy of bystanders being recorded by the glasses, our research protocols are designed to ensure recorded video is processed by an AI anonymization model that removes bystander faces and vehicle license plates. Detected face and license plate regions are processed with a Gaussian blur such that these personal identification information (PII) regions are obscured. This process helps to ensure that anonymized versions of the video is retained for research purposes. In Project Aria, we have developed a state-of-the-art anonymization system EgoBlur. In this paper, we present extensive analysis of EgoBlur on challenging datasets comparing its performance with other state-of-the-art systems from industry and academia including extensive Responsible AI analysis on recently released Casual Conversations V2 dataset.
    Keywords Computer Science - Computer Vision and Pattern Recognition
    Publishing date 2023-08-24
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: Magnetic resonance imaging with optical preamplification and detection.

    Simonsen, A / Sánchez-Heredia, J D / Saarinen, S A / Ardenkjær-Larsen, J H / Schliesser, A / Polzik, E S

    Scientific reports

    2019  Volume 9, Issue 1, Page(s) 18173

    Abstract: Magnetic resonance (MR) imaging relies on conventional electronics that is increasingly challenged by the push for stronger magnetic fields and higher channel count. These problems can be avoided by utilizing optical technologies. As a replacement for ... ...

    Abstract Magnetic resonance (MR) imaging relies on conventional electronics that is increasingly challenged by the push for stronger magnetic fields and higher channel count. These problems can be avoided by utilizing optical technologies. As a replacement for the standard low-noise preamplifier, we have implemented a new transduction principle that upconverts an MR signal to the optical domain and imaged a phantom in a clinical 3 T scanner with signal-to-noise comparable to classical induction detection.
    Language English
    Publishing date 2019-12-03
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-019-54200-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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