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  1. Article ; Online: A Robust Pipeline for the Multi-Stage Accelerated Differentiation of Functional 3D Cortical Organoids from Human Pluripotent Stem Cells.

    Whye, Dosh / Wood, Delaney / Saber, Wardiya Afshar / Norabuena, Erika M / Makhortova, Nina R / Sahin, Mustafa / Buttermore, Elizabeth D

    Current protocols

    2023  Volume 3, Issue 1, Page(s) e641

    Abstract: Disordered cellular development, abnormal neuroanatomical formations, and dysfunction of neuronal circuitry are among the pathological manifestations of cortical regions in the brain that are often implicated in complex neurodevelopmental disorders. With ...

    Abstract Disordered cellular development, abnormal neuroanatomical formations, and dysfunction of neuronal circuitry are among the pathological manifestations of cortical regions in the brain that are often implicated in complex neurodevelopmental disorders. With the advancement of stem cell methodologies such as cerebral organoid generation, it is possible to study these processes in vitro using 3D cellular platforms that mirror key developmental stages occurring throughout embryonic neurogenesis. Patterning-based stem cell models of directed neuronal development offer one approach to accomplish this, but these protocols often require protracted periods of cell culture to generate diverse cell types and current methods are plagued by a lack of specificity, reproducibility, and temporal control over cell derivation. Although ectopic expression of transcription factors offers another avenue to rapidly generate neurons, this process of direct lineage conversion bypasses critical junctures of neurodevelopment during which disease-relevant manifestations may occur. Here, we present a directed differentiation approach for generating human pluripotent stem cell (hPSC)-derived cortical organoids with accelerated lineage specification to generate functionally mature cortical neurons in a shorter timeline than previously established protocols. This novel protocol provides precise guidance for the specification of neuronal cell type identity as well as temporal control over the pace at which cortical lineage trajectories are established. Furthermore, we present assays that can be used as tools to interrogate stage-specific developmental signaling mechanisms. By recapitulating major components of embryonic neurogenesis, this protocol allows for improved in vitro modeling of cortical development while providing a platform that can be utilized to uncover disease-specific mechanisms of disordered development at various stages across the differentiation timeline. © 2023 Wiley Periodicals LLC. Basic Protocol 1: 3D hPSC neural induction Support Protocol 1: Neural rosette formation assay Support Protocol 2: Neurosphere generation Support Protocol 3: Enzymatic dissociation, NSC expansion, and cryopreservation Basic Protocol 2: 3D neural progenitor expansion Basic Protocol 3: 3D accelerated cortical lineage patterning and terminal differentiation.
    MeSH term(s) Humans ; Reproducibility of Results ; Cell Differentiation ; Pluripotent Stem Cells/metabolism ; Neurons ; Organoids/metabolism
    Language English
    Publishing date 2023-01-01
    Publishing country United States
    Document type Journal Article
    ISSN 2691-1299
    ISSN (online) 2691-1299
    DOI 10.1002/cpz1.641
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: High-content screening identifies a small molecule that restores AP-4-dependent protein trafficking in neuronal models of AP-4-associated hereditary spastic paraplegia.

    Saffari, Afshin / Brechmann, Barbara / Böger, Cedric / Saber, Wardiya Afshar / Jumo, Hellen / Whye, Dosh / Wood, Delaney / Wahlster, Lara / Alecu, Julian E / Ziegler, Marvin / Scheffold, Marlene / Winden, Kellen / Hubbs, Jed / Buttermore, Elizabeth D / Barrett, Lee / Borner, Georg H H / Davies, Alexandra K / Ebrahimi-Fakhari, Darius / Sahin, Mustafa

    Nature communications

    2024  Volume 15, Issue 1, Page(s) 584

    Abstract: Unbiased phenotypic screens in patient-relevant disease models offer the potential to detect therapeutic targets for rare diseases. In this study, we developed a high-throughput screening assay to identify molecules that correct aberrant protein ... ...

    Abstract Unbiased phenotypic screens in patient-relevant disease models offer the potential to detect therapeutic targets for rare diseases. In this study, we developed a high-throughput screening assay to identify molecules that correct aberrant protein trafficking in adapter protein complex 4 (AP-4) deficiency, a rare but prototypical form of childhood-onset hereditary spastic paraplegia characterized by mislocalization of the autophagy protein ATG9A. Using high-content microscopy and an automated image analysis pipeline, we screened a diversity library of 28,864 small molecules and identified a lead compound, BCH-HSP-C01, that restored ATG9A pathology in multiple disease models, including patient-derived fibroblasts and induced pluripotent stem cell-derived neurons. We used multiparametric orthogonal strategies and integrated transcriptomic and proteomic approaches to delineate potential mechanisms of action of BCH-HSP-C01. Our results define molecular regulators of intracellular ATG9A trafficking and characterize a lead compound for the treatment of AP-4 deficiency, providing important proof-of-concept data for future studies.
    MeSH term(s) Humans ; Spastic Paraplegia, Hereditary/drug therapy ; Spastic Paraplegia, Hereditary/genetics ; Spastic Paraplegia, Hereditary/metabolism ; Proteomics ; Neurons/metabolism ; Protein Transport ; Proteins/metabolism ; Mutation
    Chemical Substances Proteins
    Language English
    Publishing date 2024-01-17
    Publishing country England
    Document type Journal Article
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-023-44264-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: High-Content Small Molecule Screen Identifies a Novel Compound That Restores AP-4-Dependent Protein Trafficking in Neuronal Models of AP-4-Associated Hereditary Spastic Paraplegia.

    Saffari, Afshin / Brechmann, Barbara / Boeger, Cedric / Saber, Wardiya Afshar / Jumo, Hellen / Whye, Dosh / Wood, Delaney / Wahlster, Lara / Alecu, Julian / Ziegler, Marvin / Scheffold, Marlene / Winden, Kellen / Hubbs, Jed / Buttermore, Elizabeth / Barrett, Lee / Borner, Georg / Davies, Alexandra / Sahin, Mustafa / Ebrahimi-Fakhari, Darius

    Research square

    2023  

    Abstract: Unbiased phenotypic screens in patient-relevant disease models offer the potential to detect novel therapeutic targets for rare diseases. In this study, we developed a high-throughput screening assay to identify molecules that correct aberrant protein ... ...

    Abstract Unbiased phenotypic screens in patient-relevant disease models offer the potential to detect novel therapeutic targets for rare diseases. In this study, we developed a high-throughput screening assay to identify molecules that correct aberrant protein trafficking in adaptor protein complex 4 (AP-4) deficiency, a rare but prototypical form of childhood-onset hereditary spastic paraplegia, characterized by mislocalization of the autophagy protein ATG9A. Using high-content microscopy and an automated image analysis pipeline, we screened a diversity library of 28,864 small molecules and identified a lead compound,
    Language English
    Publishing date 2023-06-12
    Publishing country United States
    Document type Preprint
    DOI 10.21203/rs.3.rs-3036166/v1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Wide-field multiphoton imaging through scattering media without correction.

    Escobet-Montalbán, Adrià / Spesyvtsev, Roman / Chen, Mingzhou / Saber, Wardiya Afshar / Andrews, Melissa / Herrington, C. Simon / Mazilu, Michael / Dholakia, Kishan

    Science advances

    2018  Volume 4, Issue 10, Page(s) eaau1338

    Abstract: Optical approaches to fluorescent, spectroscopic, and morphological imaging have made exceptional advances in the last decade. Super-resolution imaging and wide-field multiphoton imaging are now underpinning major advances across the biomedical sciences. ...

    Abstract Optical approaches to fluorescent, spectroscopic, and morphological imaging have made exceptional advances in the last decade. Super-resolution imaging and wide-field multiphoton imaging are now underpinning major advances across the biomedical sciences. While the advances have been startling, the key unmet challenge to date in all forms of optical imaging is to penetrate deeper. A number of schemes implement aberration correction or the use of complex photonics to address this need. In contrast, we approach this challenge by implementing a scheme that requires no a priori information about the medium nor its properties. Exploiting temporal focusing and single-pixel detection in our innovative scheme, we obtain wide-field two-photon images through various turbid media including a scattering phantom and tissue reaching a depth of up to seven scattering mean free path lengths. Our results show that it competes favorably with standard point-scanning two-photon imaging, with up to a fivefold improvement in signal-to-background ratio while showing significantly lower photobleaching.
    Language English
    Publishing date 2018-10-12
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2810933-8
    ISSN 2375-2548 ; 2375-2548
    ISSN (online) 2375-2548
    ISSN 2375-2548
    DOI 10.1126/sciadv.aau1338
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Modeling pain in vitro using nociceptor neurons reprogrammed from fibroblasts.

    Wainger, Brian J / Buttermore, Elizabeth D / Oliveira, Julia T / Mellin, Cassidy / Lee, Seungkyu / Saber, Wardiya Afshar / Wang, Amy J / Ichida, Justin K / Chiu, Isaac M / Barrett, Lee / Huebner, Eric A / Bilgin, Canan / Tsujimoto, Naomi / Brenneis, Christian / Kapur, Kush / Rubin, Lee L / Eggan, Kevin / Woolf, Clifford J

    Nature neuroscience

    2014  Volume 18, Issue 1, Page(s) 17–24

    Abstract: Reprogramming somatic cells from one cell fate to another can generate specific neurons suitable for disease modeling. To maximize the utility of patient-derived neurons, they must model not only disease-relevant cell classes, but also the diversity of ... ...

    Abstract Reprogramming somatic cells from one cell fate to another can generate specific neurons suitable for disease modeling. To maximize the utility of patient-derived neurons, they must model not only disease-relevant cell classes, but also the diversity of neuronal subtypes found in vivo and the pathophysiological changes that underlie specific clinical diseases. We identified five transcription factors that reprogram mouse and human fibroblasts into noxious stimulus-detecting (nociceptor) neurons. These recapitulated the expression of quintessential nociceptor-specific functional receptors and channels found in adult mouse nociceptor neurons, as well as native subtype diversity. Moreover, the derived nociceptor neurons exhibited TrpV1 sensitization to the inflammatory mediator prostaglandin E2 and the chemotherapeutic drug oxaliplatin, modeling the inherent mechanisms underlying inflammatory pain hypersensitivity and painful chemotherapy-induced neuropathy. Using fibroblasts from patients with familial dysautonomia (hereditary sensory and autonomic neuropathy type III), we found that the technique was able to reveal previously unknown aspects of human disease phenotypes in vitro.
    MeSH term(s) Animals ; Dysautonomia, Familial/pathology ; Electrophysiological Phenomena/physiology ; Fibroblasts ; Humans ; Inflammation/pathology ; Male ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Mice, Transgenic ; Models, Neurological ; Nociceptors ; Pain/physiopathology ; Peripheral Nervous System Diseases/pathology ; Sensory Receptor Cells ; Transcription Factors
    Chemical Substances Transcription Factors
    Language English
    Publishing date 2014-11-24
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 1420596-8
    ISSN 1546-1726 ; 1097-6256
    ISSN (online) 1546-1726
    ISSN 1097-6256
    DOI 10.1038/nn.3886
    Database MEDical Literature Analysis and Retrieval System OnLINE

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