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  1. Article: Water water everywhere, but not enough for salmon? Organizing integrated water and fisheries management in Puget Sound

    Safford, T. G. / Norman, K. C

    Journal of environmental management

    2011  Volume 92, Issue 3, Page(s) 838

    Language English
    Document type Article
    ZDB-ID 184882-3
    ISSN 0301-4797
    Database Current Contents Nutrition, Environment, Agriculture

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    In stock of ZB MED Bonn / Germany

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  2. Article: Public perceptions of the response to the Deepwater Horizon oil spill: Personal experiences, information sources, and social context

    Safford, T. G. / Ulrich, J. D. / Hamilton, L. C.

    Journal of environmental management

    2012  Volume 113, Issue -, Page(s) 31

    Language English
    Document type Article
    ZDB-ID 184882-3
    ISSN 0301-4797
    Database Current Contents Nutrition, Environment, Agriculture

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    In stock of ZB MED Bonn / Germany

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  3. Article ; Online: TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data.

    Lorenzi, Hernan A / Hoover, Jeff / Inman, Jason / Safford, Todd / Murphy, Sean / Kagan, Leonid / Williamson, Shannon J

    Standards in genomic sciences

    2011  Volume 4, Issue 3, Page(s) 418–429

    Abstract: In the past few years, the field of metagenomics has been growing at an accelerated pace, particularly in response to advancements in new sequencing technologies. The large volume of sequence data from novel organisms generated by metagenomic projects ... ...

    Abstract In the past few years, the field of metagenomics has been growing at an accelerated pace, particularly in response to advancements in new sequencing technologies. The large volume of sequence data from novel organisms generated by metagenomic projects has triggered the development of specialized databases and tools focused on particular groups of organisms or data types. Here we describe a pipeline for the functional annotation of viral metagenomic sequence data. The Viral MetaGenome Annotation Pipeline (VMGAP) pipeline takes advantage of a number of specialized databases, such as collections of mobile genetic elements and environmental metagenomes to improve the classification and functional prediction of viral gene products. The pipeline assigns a functional term to each predicted protein sequence following a suite of comprehensive analyses whose results are ranked according to a priority rules hierarchy. Additional annotation is provided in the form of enzyme commission (EC) numbers, GO/MeGO terms and Hidden Markov Models together with supporting evidence.
    Language English
    Publishing date 2011-06-30
    Publishing country England
    Document type Journal Article
    ZDB-ID 2586662-X
    ISSN 1944-3277 ; 1944-3277
    ISSN (online) 1944-3277
    ISSN 1944-3277
    DOI 10.4056/sigs.1694706
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: A GAL4-driver line resource for Drosophila neurobiology.

    Jenett, Arnim / Rubin, Gerald M / Ngo, Teri-T B / Shepherd, David / Murphy, Christine / Dionne, Heather / Pfeiffer, Barret D / Cavallaro, Amanda / Hall, Donald / Jeter, Jennifer / Iyer, Nirmala / Fetter, Dona / Hausenfluck, Joanna H / Peng, Hanchuan / Trautman, Eric T / Svirskas, Robert R / Myers, Eugene W / Iwinski, Zbigniew R / Aso, Yoshinori /
    DePasquale, Gina M / Enos, Adrianne / Hulamm, Phuson / Lam, Shing Chun Benny / Li, Hsing-Hsi / Laverty, Todd R / Long, Fuhui / Qu, Lei / Murphy, Sean D / Rokicki, Konrad / Safford, Todd / Shaw, Kshiti / Simpson, Julie H / Sowell, Allison / Tae, Susana / Yu, Yang / Zugates, Christopher T

    Cell reports

    2012  Volume 2, Issue 4, Page(s) 991–1001

    Abstract: We established a collection of 7,000 transgenic lines of Drosophila melanogaster. Expression of GAL4 in each line is controlled by a different, defined fragment of genomic DNA that serves as a transcriptional enhancer. We used confocal microscopy of ... ...

    Abstract We established a collection of 7,000 transgenic lines of Drosophila melanogaster. Expression of GAL4 in each line is controlled by a different, defined fragment of genomic DNA that serves as a transcriptional enhancer. We used confocal microscopy of dissected nervous systems to determine the expression patterns driven by each fragment in the adult brain and ventral nerve cord. We present image data on 6,650 lines. Using both manual and machine-assisted annotation, we describe the expression patterns in the most useful lines. We illustrate the utility of these data for identifying novel neuronal cell types, revealing brain asymmetry, and describing the nature and extent of neuronal shape stereotypy. The GAL4 lines allow expression of exogenous genes in distinct, small subsets of the adult nervous system. The set of DNA fragments, each driving a documented expression pattern, will facilitate the generation of additional constructs for manipulating neuronal function.
    MeSH term(s) Animals ; Animals, Genetically Modified ; Brain/metabolism ; Databases, Factual ; Drosophila Proteins/genetics ; Drosophila Proteins/metabolism ; Drosophila melanogaster/genetics ; Drosophila melanogaster/metabolism ; Immunohistochemistry ; Microscopy, Confocal ; Nervous System/metabolism ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Transcription, Genetic
    Chemical Substances Drosophila Proteins ; GAL4 protein, Drosophila ; Transcription Factors
    Language English
    Publishing date 2012-10-11
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2649101-1
    ISSN 2211-1247 ; 2211-1247
    ISSN (online) 2211-1247
    ISSN 2211-1247
    DOI 10.1016/j.celrep.2012.09.011
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: ON THE U. S. NAVAL OBSERVATORY.

    Safford, T H

    Science (New York, N.Y.)

    1899  Volume 10, Issue 240, Page(s) 153

    Language English
    Publishing date 1899-08-04
    Publishing country United States
    Document type Journal Article
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.10.240.153
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    In stock of ZB MED Cologne/Königswinter

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  6. Article: ON THE TOTAL SOLAR ECLIPSE OF MAY 28, 1900.

    Safford, T H

    Science (New York, N.Y.)

    1899  Volume 9, Issue 226, Page(s) 615–616

    Language English
    Publishing date 1899-04-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.9.226.615
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: ASTRONOMY IN THE FIRST HALF OF THE NINETEENTH CENTURY.

    Safford, T H

    Science (New York, N.Y.)

    1899  Volume 10, Issue 261, Page(s) 962–963

    Language English
    Publishing date 1899-12-29
    Publishing country United States
    Document type Journal Article
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.10.261.962
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: A CENTURY OF PERSONAL EQUATIONS.

    Safford, T H

    Science (New York, N.Y.)

    1898  Volume 8, Issue 204, Page(s) 727–732

    Language English
    Publishing date 1898-11-25
    Publishing country United States
    Document type Journal Article
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.8.204.727
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: THE PSYCHOLOGY OF THE PERSONAL EQUATION.

    Safford, T H

    Science (New York, N.Y.)

    1897  Volume 6, Issue 152, Page(s) 784–788

    Language English
    Publishing date 1897-11-26
    Publishing country United States
    Document type Journal Article
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.6.152.784
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: THE PERSONAL EQUATION.

    Safford, T H

    Science (New York, N.Y.)

    1896  Volume 4, Issue 84, Page(s) 170–171

    Language English
    Publishing date 1896-08-07
    Publishing country United States
    Document type Journal Article
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.4.84.170
    Database MEDical Literature Analysis and Retrieval System OnLINE

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