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  1. Article ; Online: Modified World Federation of Neurosurgical Societies subarachnoid hemorrhage grading system.

    Sano, Hirotoshi / Satoh, Akira / Murayama, Yuichi / Kato, Yoko / Origasa, Hideki / Inamasu, Joji / Nouri, Mohsen / Cherian, Iype / Saito, Nobuto

    World neurosurgery

    2015  Volume 83, Issue 5, Page(s) 801–807

    Abstract: Object: A modified World Federation of Neurosurgical Societies scale (m-WFNS scale) for aneurysmal subarachnoid hemorrhage (SAH) recently has been proposed, in which patients with Glasgow Coma Scale (GCS) scores of 14 are assigned to grade II and those ... ...

    Abstract Object: A modified World Federation of Neurosurgical Societies scale (m-WFNS scale) for aneurysmal subarachnoid hemorrhage (SAH) recently has been proposed, in which patients with Glasgow Coma Scale (GCS) scores of 14 are assigned to grade II and those with GCS scores of 13 are assigned to grade III regardless of the presence of neurologic deficits. The study objective was to evaluate outcome predictability of the m-WFNS scale in a large cohort.
    Methods: This was a multicenter prospective observational study conducted in Japan. A total of 1656 patients with SAH were registered during the 2.5-year study period, and the outcome predictability, using the Glasgow Outcome Scale (GOS) and modified Rankin Scale (mRS) scores at discharge and at 90 days after onset, was evaluated by comparing the m-WFNS with the original WFNS scale. We focused on whether significant differences in these scores were present between the neighboring grades.
    Results: In the m-WFNS scale, significant difference between any neighboring grades was observed both in the mean GOS and mRS scores at 90 days except between grades III/IV. However, differences were not significant between grades II/III and between grades III/IV in the original WFNS scale.
    Conclusions: SAH-induced brain injury may be substantially severer in patients with GCS 13 than those with GCS 14, which may explain why grade III patients faired significantly worse than grade II patients by the modified WFNS scale. Although further validation is necessary, the m-WFNS scale has a potential of providing neurosurgeons with simpler and more reliable prognostication of patients with SAH.
    MeSH term(s) Aged ; Cohort Studies ; Disability Evaluation ; Female ; Glasgow Coma Scale ; Glasgow Outcome Scale ; Humans ; Male ; Middle Aged ; Neurosurgery/standards ; Neurosurgical Procedures/standards ; Persistent Vegetative State/epidemiology ; Prospective Studies ; Reproducibility of Results ; Subarachnoid Hemorrhage/mortality ; Subarachnoid Hemorrhage/pathology ; Subarachnoid Hemorrhage/surgery ; Treatment Outcome
    Language English
    Publishing date 2015-05
    Publishing country United States
    Document type Journal Article ; Multicenter Study ; Observational Study
    ZDB-ID 2534351-8
    ISSN 1878-8769 ; 1878-8750
    ISSN (online) 1878-8769
    ISSN 1878-8750
    DOI 10.1016/j.wneu.2014.12.032
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals

    Watanabe Yuka / Fujishima Kosuke / Takane Kahori / Sato Asako / Saito Nobuto / Tomita Masaru / Kanai Akio

    BMC Genomics, Vol 11, Iss 1, p

    2010  Volume 101

    Abstract: Abstract Background In many eukaryotes, microRNAs (miRNAs) bind to complementary sites in the 3'-untranslated regions (3'-UTRs) of target messenger RNAs (mRNAs) and regulate their expression at the stage of translation. Recent studies have revealed that ... ...

    Abstract Abstract Background In many eukaryotes, microRNAs (miRNAs) bind to complementary sites in the 3'-untranslated regions (3'-UTRs) of target messenger RNAs (mRNAs) and regulate their expression at the stage of translation. Recent studies have revealed that many miRNAs are evolutionarily conserved; however, the evolution of their target genes has yet to be systematically characterized. We sought to elucidate a set of conserved miRNA/target-gene pairs and to analyse the mechanism underlying miRNA-mediated gene regulation in the early stage of bilaterian evolution. Results Initially, we extracted five evolutionarily conserved miRNAs ( let-7 , miR-1 , miR-124 , miR-125/lin-4 , and miR-34 ) among five diverse bilaterian animals. Subsequently, we designed a procedure to predict evolutionarily conserved miRNA/target-gene pairs by introducing orthologous gene information. As a result, we extracted 31 orthologous miRNA/target-gene pairs that were conserved among at least four diverse bilaterian animals; the prediction set showed prominent enrichment of orthologous miRNA/target-gene pairs that were verified experimentally. Approximately 84% of the target genes were regulated by three miRNAs ( let-7, miR-1 , and miR-124 ) and their function was classified mainly into the following categories: development, muscle formation, cell adhesion, and gene regulation. We used a reporter gene assay to experimentally verify the downregulation of six candidate pairs (out of six tested pairs) in HeLa cells. Conclusions The application of our new method enables the identification of 31 miRNA/target-gene pairs that were expected to have been regulated from the era of the common bilaterian ancestor. The downregulation of all six candidate pairs suggests that orthologous information contributed to the elucidation of the primordial set of genes that has been regulated by miRNAs; it was also an efficient tool for the elimination of false positives from the predicted candidates. In conclusion, our study identified potentially important miRNA-target pairs that were evolutionarily conserved throughout diverse bilaterian animals and that may provide new insights into early-stage miRNA functions.
    Keywords Genetics ; QH426-470 ; Biology (General) ; QH301-705.5 ; Science ; Q ; DOAJ:Genetics ; DOAJ:Biology ; DOAJ:Biology and Life Sciences ; Biotechnology ; TP248.13-248.65
    Subject code 500
    Language English
    Publishing date 2010-02-01T00:00:00Z
    Publisher BioMed Central
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals.

    Takane, Kahori / Fujishima, Kosuke / Watanabe, Yuka / Sato, Asako / Saito, Nobuto / Tomita, Masaru / Kanai, Akio

    BMC genomics

    2010  Volume 11, Page(s) 101

    Abstract: Background: In many eukaryotes, microRNAs (miRNAs) bind to complementary sites in the 3'-untranslated regions (3'-UTRs) of target messenger RNAs (mRNAs) and regulate their expression at the stage of translation. Recent studies have revealed that many ... ...

    Abstract Background: In many eukaryotes, microRNAs (miRNAs) bind to complementary sites in the 3'-untranslated regions (3'-UTRs) of target messenger RNAs (mRNAs) and regulate their expression at the stage of translation. Recent studies have revealed that many miRNAs are evolutionarily conserved; however, the evolution of their target genes has yet to be systematically characterized. We sought to elucidate a set of conserved miRNA/target-gene pairs and to analyse the mechanism underlying miRNA-mediated gene regulation in the early stage of bilaterian evolution.
    Results: Initially, we extracted five evolutionarily conserved miRNAs (let-7, miR-1, miR-124, miR-125/lin-4, and miR-34) among five diverse bilaterian animals. Subsequently, we designed a procedure to predict evolutionarily conserved miRNA/target-gene pairs by introducing orthologous gene information. As a result, we extracted 31 orthologous miRNA/target-gene pairs that were conserved among at least four diverse bilaterian animals; the prediction set showed prominent enrichment of orthologous miRNA/target-gene pairs that were verified experimentally. Approximately 84% of the target genes were regulated by three miRNAs (let-7, miR-1, and miR-124) and their function was classified mainly into the following categories: development, muscle formation, cell adhesion, and gene regulation. We used a reporter gene assay to experimentally verify the downregulation of six candidate pairs (out of six tested pairs) in HeLa cells.
    Conclusions: The application of our new method enables the identification of 31 miRNA/target-gene pairs that were expected to have been regulated from the era of the common bilaterian ancestor. The downregulation of all six candidate pairs suggests that orthologous information contributed to the elucidation of the primordial set of genes that has been regulated by miRNAs; it was also an efficient tool for the elimination of false positives from the predicted candidates. In conclusion, our study identified potentially important miRNA-target pairs that were evolutionarily conserved throughout diverse bilaterian animals and that may provide new insights into early-stage miRNA functions.
    MeSH term(s) 3' Untranslated Regions ; Animals ; Computational Biology ; Conserved Sequence/genetics ; Down-Regulation ; Evolution, Molecular ; Gene Expression Regulation ; HeLa Cells ; Humans ; MicroRNAs/genetics ; Sequence Alignment ; Sequence Analysis, RNA
    Chemical Substances 3' Untranslated Regions ; MIRN1 microRNA, human ; MIRN124 microRNA, human ; MicroRNAs ; mirnlet7 microRNA, human
    Language English
    Publishing date 2010-02-09
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1471-2164
    ISSN (online) 1471-2164
    DOI 10.1186/1471-2164-11-101
    Database MEDical Literature Analysis and Retrieval System OnLINE

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