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  1. Article ; Online: Through the eye of a Gobi khulan - Application of camera collars for ecological research of far-ranging species in remote and highly variable ecosystems.

    Petra Kaczensky / Sanchir Khaliun / John Payne / Bazartseren Boldgiv / Bayarbaatar Buuveibaatar / Chris Walzer

    PLoS ONE, Vol 14, Iss 6, p e

    2019  Volume 0217772

    Abstract: The Mongolian Gobi-Eastern Steppe Ecosystem is one of the largest remaining natural drylands and home to a unique assemblage of migratory ungulates. Connectivity and integrity of this ecosystem are at risk if increasing human activities are not carefully ...

    Abstract The Mongolian Gobi-Eastern Steppe Ecosystem is one of the largest remaining natural drylands and home to a unique assemblage of migratory ungulates. Connectivity and integrity of this ecosystem are at risk if increasing human activities are not carefully planned and regulated. The Gobi part supports the largest remaining population of the Asiatic wild ass (Equus hemionus; locally called "khulan"). Individual khulan roam over areas of thousands of square kilometers and the scale of their movements is among the largest described for terrestrial mammals, making them particularly difficult to monitor. Although GPS satellite telemetry makes it possible to track animals in near-real time and remote sensing provides environmental data at the landscape scale, remotely collected data also harbors the risk of missing important abiotic or biotic environmental variables or life history events. We tested the potential of animal born camera systems ("camera collars") to improve our understanding of the drivers and limitations of khulan movements. Deployment of a camera collar on an adult khulan mare resulted in 7,881 images over a one-year period. Over half of the images showed other khulan and 1,630 images showed enough of the collared khulan to classify the behaviour of the animals seen into several main categories. These khulan images provided us with: i) new insights into important life history events and grouping dynamics, ii) allowed us to calculate time budgets for many more animals than the collared khulan alone, and iii) provided us with a training dataset for calibrating data from accelerometer and tilt sensors in the collar. The images also allowed to document khulan behaviour near infrastructure and to obtain a day-time encounter rate between a specific khulan with semi-nomadic herders and their livestock. Lastly, the images allowed us to ground truth the availability of water by: i) confirming waterpoints predicted from other analyses, ii) detecting new waterpoints, and iii) compare precipitation records for rain ...
    Keywords Medicine ; R ; Science ; Q
    Subject code 710
    Language English
    Publishing date 2019-01-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article: A global metagenomic map of urban microbiomes and antimicrobial resistance

    Danko, David / Bezdan, Daniela / Afshin, Evan E / Ahsanuddin, Sofia / Bhattacharya, Chandrima / Butler, Daniel J / Chng, Kern Rei / Donnellan, Daisy / Hecht, Jochen / Jackson, Katelyn / Kuchin, Katerina / Karasikov, Mikhail / Lyons, Abigail / Mak, Lauren / Meleshko, Dmitry / Mustafa, Harun / Mutai, Beth / Neches, Russell Y / Ng, Amanda /
    Nikolayeva, Olga / Nikolayeva, Tatyana / Png, Eileen / Ryon, Krista A / Sanchez, Jorge L / Shaaban, Heba / Sierra, Maria A / Thomas, Dominique / Young, Ben / Abudayyeh, Omar O / Alicea, Josue / Bhattacharyya, Malay / Blekhman, Ran / Castro-Nallar, Eduardo / Cañas, Ana M / Chatziefthimiou, Aspassia D / Crawford, Robert W / De Filippis, Francesca / Deng, Youping / Desnues, Christelle / Dias-Neto, Emmanuel / Dybwad, Marius / Elhaik, Eran / Ercolini, Danilo / Frolova, Alina / Gankin, Dennis / Gootenberg, Jonathan S / Graf, Alexandra B / Green, David C / Hajirasouliha, Iman / Hastings, Jaden J.A / Hernandez, Mark / Iraola, Gregorio / Jang, Soojin / Kahles, Andre / Kelly, Frank J / Knights, Kaymisha / Kyrpides, Nikos C / Łabaj, Paweł P / Lee, Patrick K.H / Leung, Marcus H.Y / Ljungdahl, Per O / Mason-Buck, Gabriella / McGrath, Ken / Meydan, Cem / Mongodin, Emmanuel F / Moraes, Milton Ozorio / Nagarajan, Niranjan / Nieto-Caballero, Marina / Noushmehr, Houtan / Oliveira, Manuela / Ossowski, Stephan / Osuolale, Olayinka O / Özcan, Orhan / Paez-Espino, David / Rascovan, Nicolás / Richard, Hugues / Rätsch, Gunnar / Schriml, Lynn M / Semmler, Torsten / Sezerman, Osman U / Shi, Leming / Shi, Tieliu / Siam, Rania / Song, Le Huu / Suzuki, Haruo / Court, Denise Syndercombe / Tighe, Scott W / Tong, Xinzhao / Udekwu, Klas I / Ugalde, Juan A / Valentine, Brandon / Vassilev, Dimitar I / Vayndorf, Elena M / Velavan, Thirumalaisamy P / Wu, Jun / Zambrano, María M / Zhu, Jifeng / Zhu, Sibo / Mason, Christopher E / Abdullah, Natasha / Abraao, Marcos / Adel, Ait-hamlat / Afaq, Muhammad / Al-Quaddoomi, Faisal S / Alam, Ireen / Albuquerque, Gabriela E / Alexiev, Alex / Ali, Kalyn / Alvarado-Arnez, Lucia E / Aly, Sarh / Amachee, Jennifer / Amorim, Maria G / Ampadu, Majelia / Amran, Muhammad Al-Fath / An, Nala / Andrew, Watson / Andrianjakarivony, Harilanto / Angelov, Michael / Antelo, Verónica / Aquino, Catharine / Aranguren, Álvaro / Araujo, Luiza F / Vasquez Arevalo, Hitler Francois / Arevalo, Jenny / Arnan, Carme / Alvarado Arnez, Lucia Elena / Arredondo, Fernanda / Arthur, Matthew / Asenjo, Freddy / Aung, Thomas Saw / Auvinet, Juliette / Aventin, Nuria / Ayaz, Sadaf / Baburyan, Silva / Bakere, Abd-Manaaf / Bakhl, Katrin / Bartelli, Thais F / Batdelger, Erdenetsetseg / Baudon, François / Becher, Kevin / Bello, Carla / Benchouaia, Médine / Benisty, Hannah / Benoiston, Anne-Sophie / Benson, Joseph / Benítez, Diego / Bernardes, Juliana / Bertrand, Denis / Beurmann, Silvia / Bitard-Feildel, Tristan / Bittner, Lucie / Black, Christina / Blanc, Guillaume / Blyther, Brittany / Bode, Toni / Boeri, Julia / Boldgiv, Bazartseren / Bolzli, Kevin / Bordigoni, Alexia / Borrelli, Ciro / Bouchard, Sonia / Bouly, Jean-Pierre / Boyd, Alicia / Branco, Gabriela P / Breschi, Alessandra / Brindefalk, Björn / Brion, Christian / Briones, Alan / Buczansla, Paulina / Burke, Catherine M / Burrell, Aszia / Butova, Alina / Buttar, Irvind / Bynoe, Jalia / Bönigk, Sven / Bøifot, Kari O / Caballero, Hiram / Cai, Xiao Wen / Calderon, Dayana / Cantillo, Angela / Carbajo, Miguel / Carbone, Alessandra / Cardenas, Anais / Carrillo, Katerine / Casalot, Laurie / Castro, Sofia / Castro, Ana V / Castro, Astred / Castro, Ana Valeria B / Cawthorne, Simone / Cedillo, Jonathan / Chaker, Salama / Chalangal, Jasna / Chan, Allison / Chasapi, Anastasia I / Chatziefthimiou, Starr / Chaudhuri, Sreya Ray / Chavan, Akash Keluth / Chavez, Francisco / Chem, Gregory / Chen, Xiaoqing / Chen, Michelle / Chen, Jenn-Wei / Chernomoretz, Ariel / Chettouh, Allaeddine / Cheung, Daisy / Chicas, Diana / Chiu, Shirley / Choudhry, Hira / Chrispin, Carl / Ciaramella, Kianna / Cifuentes, Erika / Cohen, Jake / Coil, David A / Collin, Sylvie / Conger, Colleen / Conte, Romain / Corsi, Flavia / Cossio, Cecilia N / Costa, Ana F / Cuebas, Delisia / D’Alessandro, Bruno / Dahlhausen, Katherine E / Darling, Aaron E / Das, Pujita / Davenport, Lucinda B / David, Laurent / Davidson, Natalie R / Dayama, Gargi / Delmas, Stéphane / Deng, Chris K / Dequeker, Chloé / Desert, Alexandre / Devi, Monika / Dezem, Felipe S / Dias, Clara N / Donahoe, Timothy Ryan / Dorado, Sonia / Dorsey, LaShonda / Dotsenko, Valeriia / Du, Steven / Dutan, Alexandra / Eady, Naya / Eisen, Jonathan A / Elaskandrany, Miar / Epping, Lennard / Escalera-Antezana, Juan P / Ettinger, Cassie L / Faiz, Iqra / Fan, Luice / Farhat, Nadine / Faure, Emile / Fauzi, Fazlina / Feigin, Charlie / Felice, Skye / Ferreira, Laís Pereira / Figueroa, Gabriel / Fleiss, Aubin / Flores, Denisse / Velasco Flores, Jhovana L / Fonseca, Marcos A.S / Foox, Jonathan / Forero, Juan Carlos / Francis, Aaishah / French, Kelly / Fresia, Pablo / Friedman, Jacob / Fuentes, Jaime J / Galipon, Josephine / Garcia, Mathilde / Garcia, Laura / García, Catalina / Geiger, Annie / Gerner, Samuel M / Ghose, Sonia L / Giang, Dao Phuong / Giménez, Matías / Giovannelli, Donato / Githae, Dedan / Gkotzis, Spyridon / Godoy, Liliana / Goldman, Samantha / Gonnet, Gaston H / Gonzalez, Juana / Gonzalez, Andrea / Gonzalez-Poblete, Camila / Gray, Andrew / Gregory, Tranette / Greselle, Charlotte / Guasco, Sophie / Guerra, Juan / Gurianova, Nika / Haehr, Wolfgang / Halary, Sebastien / Hartkopf, Felix / Hawkins-Zafarnia, Arya / Hazrin-Chong, Nur Hazlin / Helfrich, Eric / Hell, Eva / Henry, Tamera / Hernandez, Samuel / Hernandez, Pilar Lopez / Hess-Homeier, David / Hittle, Lauren E / Hoan, Nghiem Xuan / Holik, Aliaksei / Homma, Chiaki / Hoxie, Irene / Huber, Michael / Humphries, Elizabeth / Hyland, Stephanie / Hässig, Andrea / Häusler, Roland / Hüsser, Nathalie / Petit, Robert A / Iderzorig, Badamnyambuu / Igarashi, Mizuki / Iqbal, Shaikh B / Ishikawa, Shino / Ishizuka, Sakura / Islam, Sharah / Islam, Riham / Ito, Kohei / Ito, Sota / Ito, Takayuki / Ivankovic, Tomislav / Iwashiro, Tomoki / Jackson, Sarah / Jacobs, JoAnn / James, Marisano / Jaubert, Marianne / Jerier, Marie-Laure / Jiminez, Esmeralda / Jinfessa, Ayantu / De Jong, Ymke / Joo, Hyun Woo / Jospin, Guilllaume / Kajita, Takema / Ahmad Kassim, Affifah Saadah / Kato, Nao / Kaur, Amrit / Kaur, Inderjit / de Souza Gomes Kehdy, Fernanda / Khadka, Vedbar S / Khan, Shaira / Khavari, Mahshid / Ki, Michelle / Kim, Gina / Kim, Hyung Jun / Kim, Sangwan / King, Ryan J / KoLoMonaco, Giuseppe / Koag, Ellen / Kobko-Litskevitch, Nadezhda / Korshevniuk, Maryna / Kozhar, Michael / Krebs, Jonas / Kubota, Nanami / Kuklin, Andrii / Kumar, Sheelta S / Kwong, Rachel / Kwong, Lawrence / Lafontaine, Ingrid / Lago, Juliana / Lai, Tsoi Ying / Laine, Elodie / Laiola, Manolo / Lakhneko, Olha / Lamba, Isha / de Lamotte, Gerardo / Lannes, Romain / De Lazzari, Eleonora / Leahy, Madeline / Lee, Hyunjung / Lee, Yunmi / Lee, Lucy / Lemaire, Vincent / Leong, Emily / Lewandowska, Dagmara / Li, Chenhao / Liang, Weijun / Lin, Moses / Lisboa, Priscilla / Litskevitch, Anna / Liu, Eric Minwei / Liu, Tracy / Livia, Mayra Arauco / Lo, Yui Him / Losim, Sonia / Loubens, Manon / Lu, Jennifer / Lykhenko, Olexandr / Lysakova, Simona / Mahmoud, Salah / Majid, Sara Abdul / Makogon, Natalka / Maldonado, Denisse / Mallari, Krizzy / Malta, Tathiane M / Mamun, Maliha / Manoir, Dimitri / Marchandon, German / Marciniak, Natalia / Marinovic, Sonia / Marques, Brunna / Mathews, Nicole / Matsuzaki, Yuri / Matthys, Vincent / May, Madelyn / McComb, Elias / Meagher, Annabelle / Melamed, Adiell / Menary, Wayne / Mendez, Katterinne N / Mendez, Ambar / Mendy, Irène Mauricette / Meng, Irene / Menon, Ajay / Menor, Mark / Meoded, Roy / Merino, Nancy / Miah, Karishma / Mignotte, Mathilde / Miketic, Tanja / Miranda, Wilson / Mitsios, Athena / Miura, Ryusei / Miyake, Kunihiko / Moccia, Maria D / Mohan, Natasha / Mohsin, Mohammed / Moitra, Karobi / Moldes, Mauricio / Molina, Laura / Molinet, Jennifer / Molomjamts, Orgil-Erdene / Moniruzzaman, Eftar / Moon, Sookwon / de Oliveira Moraes, Isabelle / Moreno, Mario / Mosella, Maritza S / Moser, Josef W / Mozsary, Christopher / Muehlbauer, Amanda L / Muner, Oasima / Munia, Muntaha / Munim, Naimah / Muscat, Maureen / Mustac, Tatjana / Muñoz, Cristina / Nadalin, Francesca / Naeem, Areeg / Nagy-Szakal, Dorottya / Nakagawa, Mayuko / Narce, Ashanti / Nasu, Masaki / Navarrete, Irene González / Naveed, Hiba / Nazario, Bryan / Nedunuri, Narasimha Rao / Neff, Thomas / Nesimi, Aida / Ng, Wan Chiew / Ng, Synti / Nguyen, Gloria / Ngwa, Elsy / Nicolas, Agier / Nicolas, Pierre / Nika, Abdollahi / Noorzi, Hosna / Nosrati, Avigdor / Nunes, Diana N / O’Brien, Kathryn / O’Hara, Niamh B / Oken, Gabriella / Olawoyin, Rantimi A / Oliete, Javier Quilez / Olmeda, Kiara / Oluwadare, Tolulope / Oluwadare, Itunu A / Ordioni, Nils / Orpilla, Jenessa / Orrego, Jacqueline / Ortega, Melissa / Osma, Princess / Osuolale, Israel O / Osuolale, Oluwatosin M / Ota, Mitsuki / Oteri, Francesco / Oto, Yuya / Ounit, Rachid / Ouzounis, Christos A / Pakrashi, Subhamitra / Paras, Rachel / Pardo-Este, Coral / Park, Young-Ja / Pastuszek, Paulina / Patel, Suraj / Pathmanathan, Jananan / Patrignani, Andrea / Perez, Manuel / Peros, Ante / Persaud, Sabrina / Peters, Anisia / Phillips, Adam / Pineda, Lisbeth / Pizzi, Melissa P / Plaku, Alma / Plaku, Alketa / Pompa-Hogan, Brianna / Portilla, María Gabriela / Posada, Leonardo / Priestman, Max / Prithiviraj, Bharath / Priya, Sambhawa / Pugdeethosal, Phanthira / Pugh, Catherine E / Pulatov, Benjamin / Pupiec, Angelika / Pyrshev, Kyrylo / Qing, Tao / Rahiel, Saher / Rahmatulloev, Savlatjon / Rajendran, Kannan / Ramcharan, Aneisa / Ramirez-Rojas, Adan / Rana, Shahryar / Ratnanandan, Prashanthi / Read, Timothy D / Rehrauer, Hubert / Richer, Renee / Rivera, Alexis / Rivera, Michelle / Robertiello, Alessandro / Robinson, Courtney / Rodríguez, Paula / Rojas, Nayra Aguilar / Roldán, Paul / Rosario, Anyelic / Roth, Sandra / Ruiz, Maria / Boja Ruiz, Stephen Eduard / Russell, Kaitlan / Rybak, Mariia / Sabedot, Thais S / Sabina, Mahfuza / Saito, Ikuto / Saito, Yoshitaka / Malca Salas, Gustavo Adolfo / Salazar, Cecilia / San, Kaung Myat / Sanchez, Jorge / Sanchir, Khaliun / Sankar, Ryan / de Souza Santos, Paulo Thiago / Saravi, Zulena / Sasaki, Kai / Sato, Yuma / Sato, Masaki / Sato, Seisuke / Sato, Ryo / Sato, Kaisei / Sayara, Nowshin / Schaaf, Steffen / Schacher, Oli / Schinke, Anna-Lena M / Schlapbach, Ralph / Schori, Christian / Schriml, Jason R / Segato, Felipe / Sepulveda, Felipe / Serpa, Marianna S / De Sessions, Paola F / Severyn, Juan C / Shakil, Maheen / Shalaby, Sarah / Shari, Aliyah / Shim, Hyenah / Shirahata, Hikaru / Shiwa, Yuh / Da Silva, Ophélie / Silva, Jordana M / Simon, Gwenola / Singh, Shaleni K / Sluzek, Kasia / Smith, Rebecca / So, Eunice / Andreu Somavilla, Núria / Sonohara, Yuya / Rufino de Sousa, Nuno / Souza, Camila / Sperry, Jason / Sprinsky, Nicolas / Stark, Stefan G / La Storia, Antonietta / Suganuma, Kiyoshi / Suliman, Hamood / Sullivan, Jill / Supie, Arif Asyraf Md / Suzuki, Chisato / Takagi, Sora / Takahara, Fumie / Takahashi, Naoya / Takahashi, Kou / Takeda, Tomoki / Takenaka, Isabella K / Tanaka, Soma / Tang, Anyi / Man Tang, Yuk / Tarcitano, Emilio / Tassinari, Andrea / Taye, Mahdi / Terrero, Alexis / Thambiraja, Eunice / Thiébaut, Antonin / Thomas, Sade / Thomas, Andrew M / Togashi, Yuto / Togashi, Takumi / Tomaselli, Anna / Tomita, Masaru / Tomita, Itsuki / Toth, Oliver / Toussaint, Nora C / Tran, Jennifer M / Truong, Catalina / Tsonev, Stefan I / Tsuda, Kazutoshi / Tsurumaki, Takafumi / Tuz, Michelle / Tymoshenko, Yelyzaveta / Urgiles, Carmen / Usui, Mariko / Vacant, Sophie / Vann, Laura E / Velter, Fabienne / Ventorino, Valeria / Vera-Wolf, Patricia / Vicedomini, Riccardo / Suarez-Villamil, Michael A / Vincent, Sierra / Vivancos-Koopman, Renee / Wan, Andrew / Wang, Cindy / Warashina, Tomoro / Watanabe, Ayuki / Weekes, Samuel / Werner, Johannes / Westfall, David / Wieler, Lothar H / Williams, Michelle / Wolf, Silver A / Wong, Brian / Wong, Yan Ling / Wong, Tyler / Wright, Rasheena / Wunderlin, Tina / Yamanaka, Ryota / Yang, Jingcheng / Yano, Hirokazu / Yeh, George C / Yemets, Olena / Yeskova, Tetiana / Yoshikawa, Shusei / Zafar, Laraib / Zhang, Yang / Zhang, Shu / Zhang, Amy / Zheng, Yuanting / Zubenko, Stas

    Cell. 2021 June 24, v. 184, no. 13

    2021  

    Abstract: We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of ... ...

    Institution The International MetaSUB Consortium
    Abstract We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of microbial strains, functional characteristics, antimicrobial resistance (AMR) markers, and genetic elements, including 10,928 viruses, 1,302 bacteria, 2 archaea, and 838,532 CRISPR arrays not found in reference databases. We identified 4,246 known species of urban microorganisms and a consistent set of 31 species found in 97% of samples that were distinct from human commensal organisms. Profiles of AMR genes varied widely in type and density across cities. Cities showed distinct microbial taxonomic signatures that were driven by climate and geographic differences. These results constitute a high-resolution global metagenomic atlas that enables discovery of organisms and genes, highlights potential public health and forensic applications, and provides a culture-independent view of AMR burden in cities.
    Keywords Archaea ; antibiotic resistance ; climate ; forensic sciences ; humans ; metagenomics ; microbial ecology ; microbiome ; public health
    Language English
    Dates of publication 2021-0624
    Size p. 3376-3393.e17.
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2021.05.002
    Database NAL-Catalogue (AGRICOLA)

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