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  1. Article ; Online: Human brain organoids to explore SARS-CoV-2-induced effects on the central nervous system.

    Ostermann, Philipp Niklas / Schaal, Heiner

    Reviews in medical virology

    2023  Volume 33, Issue 2, Page(s) e2430

    Abstract: Severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2) is the causative agent of coronavirus disease 2019 (COVID-19). In less than three years, an estimated 600 million infections with SARS-CoV-2 occurred worldwide, resulting in a pandemic ... ...

    Abstract Severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2) is the causative agent of coronavirus disease 2019 (COVID-19). In less than three years, an estimated 600 million infections with SARS-CoV-2 occurred worldwide, resulting in a pandemic with tremendous impact especially on economic and health sectors. Initially considered a respiratory disease, COVID-19, along with its long-term sequelae (long-COVID) rather is a systemic disease. Neurological symptoms like dementia or encephalopathy were reported early during the pandemic as concomitants of the acute phase and as characteristics of long-COVID. An excessive inflammatory immune response is hypothesized to play a major role in this context. However, direct infection of neural cells may also contribute to the neurological aspects of (long)-COVID-19. To mainly explore such direct effects of SARS-CoV-2 on the central nervous system, human brain organoids provide a useful platform. Infecting these three-dimensional tissue cultures allows the study of viral neurotropism as well as of virus-induced effects on single cells or even the complex cellular network within the organoid. In this review, we summarize the experimental studies that used SARS-CoV-2-infected human brain organoids to unravel the complex nature of (long)-COVID-19-related neurological manifestations.
    MeSH term(s) Humans ; SARS-CoV-2/physiology ; COVID-19 ; Post-Acute COVID-19 Syndrome ; Central Nervous System ; Brain ; Organoids
    Language English
    Publishing date 2023-02-15
    Publishing country England
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 1086043-5
    ISSN 1099-1654 ; 1052-9276
    ISSN (online) 1099-1654
    ISSN 1052-9276
    DOI 10.1002/rmv.2430
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Book ; Online ; Thesis: The mRNA stability Regulator Khd4 determines infectious hyphae development in Ustilago maydis

    Sankaranarayanan, Srimeenakshi [Verfasser] / Feldbrügge, Michael [Gutachter] / Schaal, Heiner [Gutachter]

    2024  

    Author's details Srimeenakshi Sankaranarayanan ; Gutachter: Michael Feldbrügge, Heiner Schaal
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universitäts- und Landesbibliothek der Heinrich-Heine-Universität Düsseldorf
    Publishing place Düsseldorf
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  3. Book ; Thesis: Funktion und Expression des HIV-1 Glykoproteins

    Schaal, Heiner

    1998  

    Author's details vorgelegt von Heiner Schaal
    Language German
    Size 113 Bl. : Ill., graph. Darst.
    Publishing country Germany
    Document type Book ; Thesis
    Thesis / German Habilitation thesis Düsseldorf, Univ., Diss., 1998
    HBZ-ID HT013053059
    Database Catalogue ZB MED Medicine, Health

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  4. Book ; Online ; Thesis: Investigating the capacity of locked nucleic acid mixmer antisense oligonucleotides to inhibit viral replication

    Ostermann, Philipp [Verfasser] / Schaal, Heiner [Gutachter] / Feldbrügge, Michael [Gutachter]

    2022  

    Author's details Philipp Niklas Ostermann ; Gutachter: Heiner Schaal, Michael Feldbrügge
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universitäts- und Landesbibliothek der Heinrich-Heine-Universität Düsseldorf
    Publishing place Düsseldorf
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  5. Book ; Online ; Thesis: Nonsense-mediated mRNA decay: defense mechanism against viral infections and its interference with HIV-1

    Walotka, Lara [Verfasser] / Schaal, Heiner [Gutachter] / Feldbrügge, Michael [Gutachter]

    2022  

    Author's details Lara Andrea Walotka ; Gutachter: Heiner Schaal, Michael Feldbrügge
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universitäts- und Landesbibliothek der Heinrich-Heine-Universität Düsseldorf
    Publishing place Düsseldorf
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  6. Article: Comparison of commercial SARS-CoV-2 surrogate neutralization assays with a full virus endpoint dilution neutralization test in two different cohorts

    Adams, Ortwin / Andrée, Marcel / Hermsen, Derik / Lübke, Nadine / Timm, Jörg / Schaal, Heiner / Müller, Lisa

    Journal of virological methods. 2022 June 14,

    2022  

    Abstract: Determination of neutralizing antibody titers is still considered the gold standard for infection protection. A full virus neutralization test (VNT) with replication-competent, infectious SARS-CoV-2, is labour-intensive and requires Biosafety Level 3 ... ...

    Abstract Determination of neutralizing antibody titers is still considered the gold standard for infection protection. A full virus neutralization test (VNT) with replication-competent, infectious SARS-CoV-2, is labour-intensive and requires Biosafety Level 3 certified laboratories. Therefore, several commercial SARS-CoV-2 surrogate virus neutralization tests (sVNTs) have been developed that aim to detect neutralizing antibodies targeting the receptor binding domain (RBD) of the viral spike glycoprotein (S). Neutralizing antibodies to the RBD block its interaction with the angiotensin-converting enzyme 2 (ACE2) receptor protein. Here, we compared a full virus neutralization test (VNT) with two SARS-CoV-2 surrogate virus neutralization tests (sVNT) and validated them in two cohorts of i) convalescent SARS-CoV-2-infected individuals and ii) COVID vaccinated individuals. The sVNTs showed highly different results both, compared to the VNT-titers and also between the two cohorts. This indicates that currently, sVNT provide a qualitative instead of a quantitative measurement of neutralizing antibodies. The findings in this work show that the cutoff levels for sVNTs might need to be readjusted for convalescent and vaccinated individuals.
    Keywords Severe acute respiratory syndrome coronavirus 2 ; biosafety ; glycoproteins ; neutralization ; neutralization tests ; peptidyl-dipeptidase A ; quantitative analysis ; viruses
    Language English
    Dates of publication 2022-0614
    Publishing place Elsevier B.V.
    Document type Article
    Note Pre-press version
    ZDB-ID 8013-5
    ISSN 1879-0984 ; 0166-0934
    ISSN (online) 1879-0984
    ISSN 0166-0934
    DOI 10.1016/j.jviromet.2022.114569
    Database NAL-Catalogue (AGRICOLA)

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  7. Article: VarCon: An R Package for Retrieving Neighboring Nucleotides of an SNV.

    Ptok, Johannes / Theiss, Stephan / Schaal, Heiner

    Cancer informatics

    2020  Volume 19, Page(s) 1176935120976399

    Abstract: Reporting of a single nucleotide variant (SNV) follows the Sequence Variant Nomenclature (http://varnomen.hgvs.org/), using an unambiguous numbering scheme specific for coding and noncoding DNA. However, the corresponding sequence neighborhood of a given ...

    Abstract Reporting of a single nucleotide variant (SNV) follows the Sequence Variant Nomenclature (http://varnomen.hgvs.org/), using an unambiguous numbering scheme specific for coding and noncoding DNA. However, the corresponding sequence neighborhood of a given SNV, which is required to assess its impact on splicing regulation, is not easily accessible from this nomenclature. Providing fast and easy access to this neighborhood just from a given SNV reference, the novel tool VarCon combines information of the Ensembl human reference genome and the corresponding transcript table for accurate retrieval. VarCon also displays splice site scores (HBond and MaxEnt scores) and HEXplorer profiles of an SNV neighborhood, reflecting position-dependent splice enhancing and silencing properties.
    Language English
    Publishing date 2020-11-24
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2202739-7
    ISSN 1176-9351
    ISSN 1176-9351
    DOI 10.1177/1176935120976399
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Let It Go: HIV-1

    Ostermann, Philipp Niklas / Ritchie, Anastasia / Ptok, Johannes / Schaal, Heiner

    Journal of virology

    2021  Volume 95, Issue 15, Page(s) e0034221

    Abstract: After human immunodeficiency virus type 1 (HIV-1) was identified in the early 1980s, intensive work began to understand the molecular basis of HIV-1 gene expression. Subgenomic HIV-1 RNA regions, spread throughout the viral genome, were described to have ...

    Abstract After human immunodeficiency virus type 1 (HIV-1) was identified in the early 1980s, intensive work began to understand the molecular basis of HIV-1 gene expression. Subgenomic HIV-1 RNA regions, spread throughout the viral genome, were described to have a negative impact on the nuclear export of some viral transcripts. Those studies revealed an intrinsic RNA code as a new form of nuclear export regulation. Since such regulatory regions were later also identified in other viruses, as well as in cellular genes, it can be assumed that, during evolution, viruses took advantage of them to achieve more sophisticated replication mechanisms. Here, we review HIV-1
    MeSH term(s) Acquired Immunodeficiency Syndrome/pathology ; Acquired Immunodeficiency Syndrome/virology ; Active Transport, Cell Nucleus/genetics ; Algorithms ; Computational Biology/methods ; Gene Expression Regulation, Viral/genetics ; Genome, Viral/genetics ; HIV-1/genetics ; HIV-1/growth & development ; Humans ; RNA, Viral/genetics ; Virus Replication/genetics ; env Gene Products, Human Immunodeficiency Virus/genetics ; gag Gene Products, Human Immunodeficiency Virus/genetics ; pol Gene Products, Human Immunodeficiency Virus/genetics
    Chemical Substances RNA, Viral ; env Gene Products, Human Immunodeficiency Virus ; gag Gene Products, Human Immunodeficiency Virus ; pol Gene Products, Human Immunodeficiency Virus
    Language English
    Publishing date 2021-07-12
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 80174-4
    ISSN 1098-5514 ; 0022-538X
    ISSN (online) 1098-5514
    ISSN 0022-538X
    DOI 10.1128/JVI.00342-21
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Comparison of commercial SARS-CoV-2 surrogate neutralization assays with a full virus endpoint dilution neutralization test in two different cohorts.

    Adams, Ortwin / Andrée, Marcel / Hermsen, Derik / Lübke, Nadine / Timm, Jörg / Schaal, Heiner / Müller, Lisa

    Journal of virological methods

    2022  Volume 307, Page(s) 114569

    Abstract: Determination of neutralizing antibody titers is still considered the gold standard for infection protection. A full virus neutralization test (VNT) with replication-competent, infectious SARS-CoV-2, is labor-intensive and requires Biosafety Level 3 ... ...

    Abstract Determination of neutralizing antibody titers is still considered the gold standard for infection protection. A full virus neutralization test (VNT) with replication-competent, infectious SARS-CoV-2, is labor-intensive and requires Biosafety Level 3 certified laboratories. Therefore, several commercial SARS-CoV-2 surrogate virus neutralization tests (sVNTs) have been developed that aim to detect neutralizing antibodies targeting the receptor binding domain (RBD) of the viral spike glycoprotein (S). Neutralizing antibodies to the RBD block its interaction with the angiotensin-converting enzyme 2 (ACE2) receptor protein. Here, we compared a full virus neutralization test (VNT) with two SARS-CoV-2 surrogate virus neutralization tests (sVNT) and validated them in two cohorts of i) convalescent SARS-CoV-2-infected individuals and ii) COVID vaccinated individuals. The sVNTs showed highly different results both, compared to the VNT-titers and also between the two cohorts. This indicates that currently, sVNT provide a qualitative instead of a quantitative measurement of neutralizing antibodies. The findings in this work show that the cutoff levels for sVNTs might need to be readjusted for convalescent and vaccinated individuals.
    MeSH term(s) Antibodies, Neutralizing ; Antibodies, Viral ; COVID-19/diagnosis ; Humans ; Neutralization Tests ; SARS-CoV-2 ; Spike Glycoprotein, Coronavirus
    Chemical Substances Antibodies, Neutralizing ; Antibodies, Viral ; Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2
    Language English
    Publishing date 2022-06-17
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 8013-5
    ISSN 1879-0984 ; 0166-0934
    ISSN (online) 1879-0984
    ISSN 0166-0934
    DOI 10.1016/j.jviromet.2022.114569
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: HIV-1 Vpr Induces Degradation of Gelsolin, a Myeloid Cell-Specific Host Factor That Reduces Viral Infectivity by Inhibiting the Expression and Packaging of the HIV-1 Env Glycoprotein.

    Fabryova, Helena / Kao, Sandra / Sukegawa, Sayaka / Miyagi, Eri / Taylor, Louis / Ferhadian, Damien / Saito, Hideki / Schaal, Heiner / Hillebrand, Frank / Strebel, Klaus

    mBio

    2023  Volume 14, Issue 1, Page(s) e0297322

    Abstract: Gelsolin (GSN) is a structural actin-binding protein that is known to affect actin dynamics in the cell. Using mass spectrometry, we identified GSN as a novel Vpr-interacting protein. Endogenous GSN protein was expressed at detectable levels in monocyte- ... ...

    Abstract Gelsolin (GSN) is a structural actin-binding protein that is known to affect actin dynamics in the cell. Using mass spectrometry, we identified GSN as a novel Vpr-interacting protein. Endogenous GSN protein was expressed at detectable levels in monocyte-derived macrophages (MDM) and in THP-1 cells, but it was undetectable at the protein level in other cell lines tested. The HIV-1 infection of MDM was associated with a reduction in GSN steady-state levels, presumably due to the Vpr-induced degradation of GSN. Indeed, the coexpression of GSN and Viral protein R (Vpr) in transiently transfected HEK293T cells resulted in the Vpr-dependent proteasomal degradation of GSN. This effect was observed for Vprs from multiple virus isolates. The overexpression of GSN in HEK293T cells had no effect on Gag expression or particle release, but it reduced the expression and packaging of the HIV-1 envelope (Env) glycoprotein and reduced viral infectivity. An analysis of the HIV-1 splicing patterns did not reveal any GSN-dependent differences, suggesting that the effect of GSN on Env expression was regulated at a posttranscriptional level. Indeed, the treatment of transfected cells with lysosomal inhibitors reversed the effect of GSN on Env stability, suggesting that GSN reduced Env expression via enhanced lysosomal degradation. Our data identify GSN as a macrophage-specific host antiviral factor that reduces the expression of HIV-1 Env.
    MeSH term(s) Humans ; vpr Gene Products, Human Immunodeficiency Virus/genetics ; vpr Gene Products, Human Immunodeficiency Virus/metabolism ; Gelsolin/metabolism ; HIV-1 ; Gene Products, env/metabolism ; HEK293 Cells ; Myeloid Cells/metabolism ; HIV Infections ; Antiviral Agents/metabolism
    Chemical Substances vpr Gene Products, Human Immunodeficiency Virus ; Gelsolin ; Gene Products, env ; Antiviral Agents
    Language English
    Publishing date 2023-01-05
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Intramural
    ZDB-ID 2557172-2
    ISSN 2150-7511 ; 2161-2129
    ISSN (online) 2150-7511
    ISSN 2161-2129
    DOI 10.1128/mbio.02973-22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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