LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Your last searches

  1. AU="Scribner, Kim T"
  2. AU="Emanuel Schmassmann"
  3. AU="Patel, Monica"
  4. AU=Passariello Margherita
  5. AU=Saikia Bedangshu
  6. AU="Dion, Dominique"
  7. AU="Magami, Shunsuke"
  8. AU="Wagner, Henrik"

Search results

Result 1 - 10 of total 115

Search options

  1. Article ; Online: The impact of primary colonizers on the community composition of river biofilm.

    Angoshtari, Roshan / Scribner, Kim T / Marsh, Terence L

    PloS one

    2023  Volume 18, Issue 11, Page(s) e0288040

    Abstract: As a strategy for minimizing microbial infections in fish hatcheries, we have investigated how putatively probiotic bacterial populations influence biofilm formation. All surfaces that are exposed to the aquatic milieu develop a microbial community ... ...

    Abstract As a strategy for minimizing microbial infections in fish hatcheries, we have investigated how putatively probiotic bacterial populations influence biofilm formation. All surfaces that are exposed to the aquatic milieu develop a microbial community through the selective assembly of microbial populations into a surface-adhering biofilm. In the investigations reported herein, we describe laboratory experiments designed to determine how initial colonization of a surface by nonpathogenic isolates from sturgeon eggs influence the subsequent assembly of populations from a pelagic river community, into the existing biofilm. All eight of the tested strains altered the assembly of river biofilm in a strain-specific manner. Previously formed isolate biofilm was challenged with natural river populations and after 24 hours, two strains and two-isolate combinations proved highly resistant to invasion, comprising at least 80% of the biofilm community, four isolates were intermediate in resistance, accounting for at least 45% of the biofilm community and two isolates were reduced to 4% of the biofilm community. Founding biofilms of Serratia sp, and combinations of Brevundimonas sp.-Hydrogenophaga sp. and Brevundimonas sp.-Acidovorax sp. specifically blocked populations of Aeromonas and Flavobacterium, potential fish pathogens, from colonizing the biofilm. In addition, all isolate biofilms were effective at blocking invading populations of Arcobacter. Several strains, notably Deinococcus sp., recruited specific low-abundance river populations into the top 25 most abundant populations within biofilm. The experiments suggest that relatively simple measures can be used to control the assembly of biofilm on the eggs surface and perhaps offer protection from pathogens. In addition, the methodology provides a relatively rapid way to detect potentially strong ecological interactions between bacterial populations in the formation of biofilms.
    MeSH term(s) Animals ; Rivers ; Biofilms ; Flavobacterium ; Bacteria, Aerobic ; Fishes/microbiology
    Language English
    Publishing date 2023-11-13
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0288040
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article: Molecular sexing of lake sturgeon

    Scribner, Kim T / Kanefsky, Jeannette

    International Association for Great Lakes Research Journal of Great Lakes research. 2021 June, v. 47, no. 3

    2021  

    Abstract: Demographic data including characterizations of population sex and age composition are of fundamental importance for effective management, especially for numerically depressed Great Lakes populations of imperiled species such as lake sturgeon (Acipenser ... ...

    Abstract Demographic data including characterizations of population sex and age composition are of fundamental importance for effective management, especially for numerically depressed Great Lakes populations of imperiled species such as lake sturgeon (Acipenser fulvescens). The goal of this paper was to extend a recently reported Acipenserid-derived PCR-based genotyping test to determine sex of lake sturgeon. We demonstrate that the recently reported AllWSex2 primers amplified the female sex-specific region in lake sturgeon of known sex, consistent with a ZZ/ZW mode of inheritance. Sanger sequencing of female lake sturgeon PCR products matched published sequences from female sterlet (Acipenser ruthenus), showing 100% query cover and 98% (63/64) identity. The ability to provide a rapid, cost-effective, and unambiguous determination of sex for lake sturgeon will allow managers to determine compositional estimates of sex ratios during any season, and for individuals at any age or size, which is of great utility for species characterized by delayed sexual maturity and lacking external sexual dimorphisms.
    Keywords Acipenser fulvescens ; Acipenser ruthenus ; cost effectiveness ; females ; genotyping ; polymerase chain reaction ; research ; sexual maturity ; threatened species
    Language English
    Dates of publication 2021-06
    Size p. 934-936.
    Publishing place Elsevier B.V.
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 2163239-X
    ISSN 0380-1330 ; 0380-1330
    ISSN (online) 0380-1330
    ISSN 0380-1330
    DOI 10.1016/j.jglr.2021.03.015
    Database NAL-Catalogue (AGRICOLA)

    More links

    Kategorien

  3. Article: Effects of Water Filtration and Temperature on Microbial Colonization and Survival of Lake Sturgeon Eggs

    Fujimoto, Masanori / Marsh, Terence L. / Scribner, Kim T.

    North American journal of aquaculture. 2021 Jan., v. 83, no. 1

    2021  

    Abstract: Physical and biotic factors that affect development and survival during the embryonic period of fish are major concerns in aquaculture, particularly when individuals are produced using natural surface water sources. We quantified the effects of bacterial ...

    Abstract Physical and biotic factors that affect development and survival during the embryonic period of fish are major concerns in aquaculture, particularly when individuals are produced using natural surface water sources. We quantified the effects of bacterial community taxonomic composition and abundance, water filtration treatment, and incubation temperature on the development and survival of embryos from Lake Sturgeon Acipenser fulvescens, a threatened Great Lakes fish species. Eggs were fertilized and incubated using a two‐by‐two treatment design by manipulating water treatments (treated [filtered and UV treated] and untreated stream water) and temperature (12°C and 18°C) during incubation. Egg samples from five full‐sibling families were exposed to each rearing treatment. At different stages during development, eggs were analyzed for egg surface microbial community composition and abundance using terminal restriction fragment length polymorphism methods based on the 16S rRNA gene and quantitative PCR, respectively. Sanger sequencing identified egg‐associated microbial taxa. Microbial community composition derived from terminal restriction fragment length polymorphism was visualized using principal component analysis. Permutational multivariate analysis of variance revealed that the composition of microbial communities that developed on egg surfaces varied as a function of water filtration and temperature. Quantitative PCR analysis revealed that significantly higher microbial abundance was present on surfaces of eggs reared in untreated stream water than on those reared in treated stream water. Temperature did not affect egg surface microbial abundance. Significantly higher egg mortality was documented for eggs reared in unfiltered stream water (mean ± SD = 77.4 ± 17.6%) than for eggs reared in treated stream water (50.3 ± 14.7%). Temperature during incubation did not affect levels of egg mortality. Sequence analysis revealed that certain microbial taxa were associated with eggs characterized by higher survival, including Acidovorax spp. and Massilia spp., suggesting that they may be candidates for natural probiotics. Filtration and UV treatment of surface water was an effective method for modification of egg microbial community composition and quantity and significantly reduced egg mortality.
    Keywords Acidovorax ; Acipenser fulvescens ; Massilia ; aquaculture ; bacterial communities ; community structure ; eggs ; filtration ; fish ; genes ; microbial colonization ; mortality ; multivariate analysis ; principal component analysis ; probiotics ; quantitative polymerase chain reaction ; restriction fragment length polymorphism ; sequence analysis ; streams ; surface water ; taxonomy ; temperature ; ultraviolet radiation
    Language English
    Dates of publication 2021-01
    Size p. 26-37.
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 1482260-x
    ISSN 1548-8454 ; 1522-2055
    ISSN (online) 1548-8454
    ISSN 1522-2055
    DOI 10.1002/naaq.10169
    Database NAL-Catalogue (AGRICOLA)

    More links

    Kategorien

  4. Article: Evaluating the utility of effective breeding size estimates for monitoring sea lamprey spawning abundance.

    Weise, Ellen M / Scribner, Kim T / Boeberitz, Olivia / Bravener, Gale / Johnson, Nicholas S / Robinson, John D

    Ecology and evolution

    2023  Volume 13, Issue 9, Page(s) e10519

    Abstract: Sea lamprey ( ...

    Abstract Sea lamprey (
    Language English
    Publishing date 2023-09-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 2635675-2
    ISSN 2045-7758
    ISSN 2045-7758
    DOI 10.1002/ece3.10519
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  5. Article ; Online: Recovery of the gut microbiome following enteric infection and persistence of antimicrobial resistance genes in specific microbial hosts.

    Hansen, Zoe A / Vasco, Karla / Rudrik, James T / Scribner, Kim T / Zhang, Lixin / Manning, Shannon D

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 15524

    Abstract: Enteric pathogens cause widespread foodborne illness and are increasingly resistant to important antibiotics yet their ecological impact on the gut microbiome and resistome is not fully understood. Herein, shotgun metagenome sequencing was applied to ... ...

    Abstract Enteric pathogens cause widespread foodborne illness and are increasingly resistant to important antibiotics yet their ecological impact on the gut microbiome and resistome is not fully understood. Herein, shotgun metagenome sequencing was applied to stool DNA from 60 patients (cases) during an enteric bacterial infection and after recovery (follow-ups). Overall, the case samples harbored more antimicrobial resistance genes (ARGs) with greater resistome diversity than the follow-up samples (p < 0.001), while follow-ups had more diverse gut microbiota (p < 0.001). Although cases were primarily defined by genera Escherichia, Salmonella, and Shigella along with ARGs for multi-compound and multidrug resistance, follow-ups had a greater abundance of Bacteroidetes and Firmicutes phyla and resistance genes for tetracyclines, macrolides, lincosamides, and streptogramins, and aminoglycosides. A host-tracking analysis revealed that Escherichia was the primary bacterial host of ARGs in both cases and follow-ups, with a greater abundance occurring during infection. Eleven distinct extended spectrum beta-lactamase (ESBL) genes were identified during infection, with some detectable upon recovery, highlighting the potential for gene transfer within the community. Because of the increasing incidence of disease caused by foodborne pathogens and their role in harboring and transferring resistance determinants, this study enhances our understanding of how enteric infections impact human gut ecology.
    MeSH term(s) Humans ; Anti-Bacterial Agents/pharmacology ; Gastrointestinal Microbiome/genetics ; Drug Resistance, Bacterial/genetics ; Anti-Infective Agents ; Aminoglycosides
    Chemical Substances Anti-Bacterial Agents ; Anti-Infective Agents ; Aminoglycosides
    Language English
    Publishing date 2023-09-19
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, P.H.S.
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-42822-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article ; Online: Biological Investigation of the Endangered Northern Madtom in the North Channel St. Clair River

    Utrup, Brad E. / Hessenauer, Jan‐Michael / Briggs, Andrew S. / Scribner, Kim T. / Kanefsky, Jeannette / Wills, Todd C.

    North American Journal of Fisheries Management. 2023 June, v. 43, no. 3 p.730-742

    2023  

    Abstract: Aquatic organisms and the habitats they live in are declining globally, yet managers often lack even basic biological information for individual imperiled species. This makes assessment of the current status, management needs, and recovery targets for ... ...

    Abstract Aquatic organisms and the habitats they live in are declining globally, yet managers often lack even basic biological information for individual imperiled species. This makes assessment of the current status, management needs, and recovery targets for these species challenging. One such organism is the Northern Madtom Noturus stigmosus, a small, bottom‐dwelling catfish of the family Ictaluridae. Northern Madtom are listed as endangered in the state of Michigan and the province of Ontario, with only a handful of isolated populations known in each region. To address life history uncertainties and to provide fisheries managers with baseline information to inform decision making, the Michigan Department of Natural Resources annually sampled Northern Madtom in the St. Clair River using minnow traps and amassed the largest known data set for this species. We handled 871 individuals from 2010 to 2022, with yearly catch rates ranging from 0.17 to 1.33 individuals/trap. Age estimates derived from otoliths and dorsal spines of 17 individuals showed no clear pattern of bias, indicating that nonlethally collected dorsal spines provide a suitable age estimation method. We developed an age–length key to assign ages to all individuals in our data set, calculated growth parameters, and determined that annual mortality rates across all ages ranged from 46% to 69%. Diet analysis revealed that caddisfly (order Trichoptera) larvae were the dominant prey item and fecundity averaged 178 eggs/female. We compared microsatellite allele frequencies and mitochondrial DNA haplotypes among samples collected in the St. Clair River and the Detroit River. Significant evidence of genetic structure was present, indicating limited gene flow and suggesting that separate management of these two populations may be warranted. Collectively, these data provide context for managers interested in the development of biological reference points and planning for the conservation and management of this species.
    Keywords Noturus ; Trichoptera ; administrative management ; age determination ; alleles ; catfish ; data collection ; diet ; fecundity ; females ; gene flow ; haplotypes ; life history ; microsatellite repeats ; minnows ; mitochondrial DNA ; mortality ; otoliths ; rivers ; threatened species ; Michigan ; Ontario
    Language English
    Dates of publication 2023-06
    Size p. 730-742.
    Publishing place John Wiley & Sons, Ltd
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 779391-1
    ISSN 0275-5947
    ISSN 0275-5947
    DOI 10.1002/nafm.10886
    Database NAL-Catalogue (AGRICOLA)

    More links

    Kategorien

  7. Article: Multi-year evidence of unbiased sex ratios in hatchery and wild-reared age-0 lake sturgeon (Acipenser fulvescens)

    Sanfilippo, Gabrielle E. / Riedy, Joseph J. / Larson, Douglas L. / Scribner, Kim T.

    International Association for Great Lakes Research Journal of Great Lakes research. 2022 July 14,

    2022  

    Abstract: Assessment of population sex ratios allows managers to forecast recruitment dynamics and loss of genetic diversity in natural populations and is important when the focal population is in low abundance and subject to demographic stochasticity. If levels ... ...

    Abstract Assessment of population sex ratios allows managers to forecast recruitment dynamics and loss of genetic diversity in natural populations and is important when the focal population is in low abundance and subject to demographic stochasticity. If levels of natural or artificial selection differ for males and females and levels of mortality likewise vary, lower levels of population recruitment, loss of genetic diversity, and genetic drift can occur. Lake sturgeon (Acipenser fulvescens) are a species of conservation concern, where restoration efforts increasingly rely on hatchery supplementation. Raising larvae to the juvenile stage can increase survival during important early life stages; however, knowledge is lacking concerning effects of artificial rearing environments on differential sex-specific survival before release. We genetically determined the sex of 1459 age-0 lake sturgeon from three cohorts (2016 through 2018) using PCR assays of the ALLWSex2 acipenserid sexing marker. Sexed individuals represented three groups: (1) wild-captured dispersing larvae that died during hatchery rearing, (2) wild-captured dispersing larvae that survived hatchery rearing to release, and (3) wild-captured, wild-raised age-0 individuals. Sex ratios of wild-captured larvae (dead + live) were nearly 50:50 in all years surveyed. We observed slight, but non-significant, directionality in sex ratios in the live and dead hatchery-reared larvae and in wild-captured age-0 individuals. Genetic sexing methods allow for analyses during prolonged pre-reproductive periods and associated variable environmental and demographic circumstances, in situations where physical determination of sex is not possible.
    Keywords Acipenser fulvescens ; artificial selection ; genetic drift ; genetic variation ; hatcheries ; juveniles ; mortality ; research ; species recruitment
    Language English
    Dates of publication 2022-0714
    Publishing place Elsevier B.V.
    Document type Article
    Note Pre-press version
    ZDB-ID 2163239-X
    ISSN 0380-1330 ; 0380-1330
    ISSN (online) 0380-1330
    ISSN 0380-1330
    DOI 10.1016/j.jglr.2022.07.004
    Database NAL-Catalogue (AGRICOLA)

    More links

    Kategorien

  8. Article: Nested analysis of macroinvertebrate diversity along a river continuum: Identifying relevant spatial scales for stream communities

    Doretto, Alberto / Receveur, Joseph P. / Baker, Edward A. / Benbow, M. Eric / Scribner, Kim T.

    River research and applications. 2022 Feb., v. 38, no. 2

    2022  

    Abstract: Benthic macroinvertebrates are important for stream ecosystem function and are considerable food resources for vertebrate consumers such as fish. The diversity, composition, and distribution of stream macroinvertebrate taxa are affected by factors that ... ...

    Abstract Benthic macroinvertebrates are important for stream ecosystem function and are considerable food resources for vertebrate consumers such as fish. The diversity, composition, and distribution of stream macroinvertebrate taxa are affected by factors that act at different spatial scales, from microhabitat to watershed‐level effects. While comparative studies of watershed‐level and between stream influences on benthic diversity are common, the effects of scale are less investigated within individual river segments. Benthic macroinvertebrates were systematically sampled across nested spatial scales along a 2.2‐km near‐pristine stretch of the Upper Black River (MI, USA), and analyzed in relation to near‐bed flow and substrate features. Responses of community diversity metrics to near‐bed conditions were quantified, and diversity was modeled to determine the contribution of each spatial scale to total diversity. Near‐bed conditions, especially Froude number and substrate size, were positively associated with macroinvertebrate diversity and abundance. Larger (e.g., 100 m stream reach) and finer scales (e.g., individual samples) accounted for a greater proportion of variation in taxon richness and abundance, respectively. Longitudinal variation in environmental conditions was an important driver of macroinvertebrate diversity, with replacement between sites (i.e., turnover) contributing a considerably greater proportion of variation in total diversity than nestedness. Results demonstrate that macroinvertebrate communities were shaped by both local flow and substrate conditions as well as taxa replacement over larger spatial scales. This emphasizes the importance of maintaining the hydro‐morphological integrity along stream courses as a requisite condition to further watershed and fisheries conservation and management.
    Keywords aquatic invertebrates ; ecological function ; fish ; macroinvertebrates ; microhabitats ; nestedness ; research ; rivers ; streams ; watersheds
    Language English
    Dates of publication 2022-02
    Size p. 334-344.
    Publishing place John Wiley & Sons, Ltd.
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 2072626-0
    ISSN 1535-1459
    ISSN 1535-1459
    DOI 10.1002/rra.3889
    Database NAL-Catalogue (AGRICOLA)

    More links

    Kategorien

  9. Article ; Online: Ecological and Ontogenetic Components of Larval Lake Sturgeon Gut Microbiota Assembly, Successional Dynamics, and Ecological Evaluation of Neutral Community Processes.

    Abdul Razak, Shairah / Scribner, Kim T

    Applied and environmental microbiology

    2020  Volume 86, Issue 10

    Abstract: Gastrointestinal (GI) or gut microbiotas play essential roles in host development and physiology. These roles are influenced partly by the microbial community composition. During early developmental stages, the ecological processes underlying the ... ...

    Abstract Gastrointestinal (GI) or gut microbiotas play essential roles in host development and physiology. These roles are influenced partly by the microbial community composition. During early developmental stages, the ecological processes underlying the assembly and successional changes in host GI community composition are influenced by numerous factors, including dispersal from the surrounding environment, age-dependent changes in the gut environment, and changes in dietary regimes. However, the relative importance of these factors to the gut microbiota is not well understood. We examined the effects of environmental (diet and water sources) and host early ontogenetic development on the diversity of and the compositional changes in the gut microbiota of a primitive teleost fish, the lake sturgeon (
    MeSH term(s) Animals ; Diet/veterinary ; Fishes/growth & development ; Fishes/microbiology ; Gastrointestinal Microbiome ; Gastrointestinal Tract/microbiology ; High-Throughput Nucleotide Sequencing/veterinary ; RNA, Bacterial/analysis ; RNA, Ribosomal, 16S/analysis ; Water Quality
    Chemical Substances RNA, Bacterial ; RNA, Ribosomal, 16S
    Language English
    Publishing date 2020-05-05
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 223011-2
    ISSN 1098-5336 ; 0099-2240
    ISSN (online) 1098-5336
    ISSN 0099-2240
    DOI 10.1128/AEM.02662-19
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  10. Article ; Online: Quantifying nonlinear temporal effects of ethanol preservation on round goby (Neogobius melanostomus) anatomical traits.

    Lorencen, Bailey M / Homola, Jared J / Robinson, John D / Scribner, Kim T

    Journal of morphology

    2021  Volume 282, Issue 12, Page(s) 1772–1784

    Abstract: Geometric morphometrics provides a powerful means of evaluating differences in phenotypic traits among specimens. However, inferences of trait variability can be confounded when measurements are based on preserved samples. We evaluated effects of ethanol ...

    Abstract Geometric morphometrics provides a powerful means of evaluating differences in phenotypic traits among specimens. However, inferences of trait variability can be confounded when measurements are based on preserved samples. We evaluated effects of ethanol preservation on morphology over a 22-week time period for a Laurentian Great Lakes invasive fish, round goby (Neogobius melanostomus, Pallas 1814), using sets of 17 lateral and six dorsal landmarks. We tested whether ethanol preservation affected the magnitude of inter-population variation between individuals collected from lake and river habitats. Generalized least square regression determined that length did not significantly vary through the preservation time series for fish from either population, while mass decreased significantly. Body shape variation was summarized using principal component analysis, which revealed that most preservation-associated changes occurred in the first 14 days. The lateral shape experienced a large magnitude change during the first 24 h in ethanol then only minor changes for the remainder of the study. The dorsal shape began to revert to pre-preservation measurements about 14 days following preservation. Additionally, differences in shape were apparent between the two populations throughout the experiment; however, the magnitude of differences between populations varied depending on whether dorsal or lateral landmarks were considered. Our study demonstrates that tissue responses to ethanol preservation can be more complex than a simple loss of mass, resulting in difficult to predict consequences for geometric morphometric analyses, including variable responses depending on the anatomical region being analyzed.
    MeSH term(s) Animals ; Ecosystem ; Ethanol ; Fishes ; Introduced Species ; Perciformes
    Chemical Substances Ethanol (3K9958V90M)
    Language English
    Publishing date 2021-10-28
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 3084-3
    ISSN 1097-4687 ; 0022-2887 ; 0362-2525
    ISSN (online) 1097-4687
    ISSN 0022-2887 ; 0362-2525
    DOI 10.1002/jmor.21420
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

To top