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  1. Article ; Online: Digest: The role of linkage in mimicking "magic traits".

    Estandia, Andrea / Sendell-Price, Ashley T

    Evolution; international journal of organic evolution

    2020  Volume 74, Issue 11, Page(s) 2539–2540

    Abstract: Can divergence in a mating trait increase local adaption by increasing ecological divergence? Servedio and Bürger propose that "pseudomagic traits," tightly linked complexes consisting of an ecological locus under divergent selection and a locus acting ... ...

    Abstract Can divergence in a mating trait increase local adaption by increasing ecological divergence? Servedio and Bürger propose that "pseudomagic traits," tightly linked complexes consisting of an ecological locus under divergent selection and a locus acting as a mating cue, can effectively mimic pleiotropy. Such pseudomagic traits can form even when linkage between ecological and mating loci is limited.
    MeSH term(s) Adaptation, Physiological ; Genetic Linkage ; Phenotype ; Reproduction ; Selection, Genetic
    Language English
    Publishing date 2020-10-03
    Publishing country United States
    Document type News ; Comment
    ZDB-ID 2036375-8
    ISSN 1558-5646 ; 0014-3820
    ISSN (online) 1558-5646
    ISSN 0014-3820
    DOI 10.1111/evo.14102
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  2. Article ; Online: The wild ancestors of domestic animals as a neglected and threatened component of biodiversity.

    Smith, William J / Quilodrán, Claudio S / Jezierski, Michał T / Sendell-Price, Ashley T / Clegg, Sonya M

    Conservation biology : the journal of the Society for Conservation Biology

    2022  Volume 36, Issue 3, Page(s) e13867

    Abstract: Domestic animals have immense economic, cultural, and practical value and have played pivotal roles in the development of human civilization. Many domesticates have, among their wild relatives, undomesticated forms representative of their ancestors. ... ...

    Abstract Domestic animals have immense economic, cultural, and practical value and have played pivotal roles in the development of human civilization. Many domesticates have, among their wild relatives, undomesticated forms representative of their ancestors. Resurgent interest in these ancestral forms has highlighted the unclear genetic status of many, and some are threatened with extinction by hybridization with domestic conspecifics. We considered the contemporary status of these ancestral forms relative to their scientific, practical, and ecological importance; the varied impacts of wild-domestic hybridization; and the challenges and potential resolutions involved in conservation efforts. Identifying and conserving ancestral forms, particularly with respect to disentangling patterns of gene flow from domesticates, is complex because of the lack of available genomic and phenotypic baselines. Comparative behavioral, ecological, and genetic studies of ancestral-type, feral, and domestic animals should be prioritized to establish the contemporary status of the former. Such baseline information will be fundamental in ensuring successful conservation efforts.
    MeSH term(s) Animals ; Animals, Domestic/genetics ; Biodiversity ; Conservation of Natural Resources/methods ; Gene Flow ; Hybridization, Genetic
    Language English
    Publishing date 2022-01-20
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 58735-7
    ISSN 1523-1739 ; 0888-8892
    ISSN (online) 1523-1739
    ISSN 0888-8892
    DOI 10.1111/cobi.13867
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  3. Article ; Online: Candidate gene polymorphisms are linked to dispersive and migratory behaviour: Searching for a mechanism behind the "paradox of the great speciators".

    Estandía, Andrea / Sendell-Price, Ashley T / Oatley, Graeme / Robertson, Fiona / Potvin, Dominique / Massaro, Melanie / Robertson, Bruce C / Clegg, Sonya M

    Journal of evolutionary biology

    2023  Volume 36, Issue 10, Page(s) 1503–1516

    Abstract: The "paradox of the great speciators" has puzzled evolutionary biologists for over half a century. A great speciator requires excellent dispersal propensity to explain its occurrence on multiple islands, but reduced dispersal ability to explain its high ... ...

    Abstract The "paradox of the great speciators" has puzzled evolutionary biologists for over half a century. A great speciator requires excellent dispersal propensity to explain its occurrence on multiple islands, but reduced dispersal ability to explain its high number of subspecies. A rapid reduction in dispersal ability is often invoked to solve this apparent paradox, but a proximate mechanism has not been identified yet. Here, we explored the role of six genes linked to migration and animal personality differences (CREB1, CLOCK, ADCYAP1, NPAS2, DRD4, and SERT) in 20 South Pacific populations of silvereye (Zosterops lateralis) that range from highly sedentary to partially migratory, to determine if genetic variation is associated with dispersal propensity and migration. We detected genetic associations in three of the six genes: (i) in a partial migrant population, migrant individuals had longer microsatellite alleles at the CLOCK gene compared to resident individuals from the same population; (ii) CREB1 displayed longer average microsatellite allele lengths in recently colonized island populations (<200 years), compared to evolutionarily older populations. Bayesian broken stick regression models supported a reduction in CREB1 length with time since colonization; and (iii) like CREB1, DRD4 showed differences in polymorphisms between recent and old colonizations but a larger sample is needed to confirm. ADCYAP1, SERT, and NPAS2 were variable but that variation was not associated with dispersal propensity. The association of genetic variants at three genes with migration and dispersal ability in silvereyes provides the impetus for further exploration of genetic mechanisms underlying dispersal shifts, and the prospect of resolving a long-running evolutionary paradox through a genetic lens.
    MeSH term(s) Animals ; Humans ; Animal Migration ; Bayes Theorem ; Polymorphism, Genetic ; Passeriformes/genetics ; Biological Evolution
    Language English
    Publishing date 2023-09-26
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1465318-7
    ISSN 1420-9101 ; 1010-061X
    ISSN (online) 1420-9101
    ISSN 1010-061X
    DOI 10.1111/jeb.14222
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  4. Article: An island‐hopping bird reveals how founder events shape genome‐wide divergence

    Sendell‐Price, Ashley T / Ruegg, Kristen C / Robertson, Bruce C / Clegg, Sonya M

    Molecular ecology. 2021 June, v. 30, no. 11

    2021  

    Abstract: When populations colonize new areas, both strong selection and strong drift can be experienced due to novel environments and small founding populations, respectively. Empirical studies have predominantly focused on the phenotype when assessing the role ... ...

    Abstract When populations colonize new areas, both strong selection and strong drift can be experienced due to novel environments and small founding populations, respectively. Empirical studies have predominantly focused on the phenotype when assessing the role of selection, and limited neutral‐loci when assessing founder‐induced loss of diversity. Consequently, the extent to which processes interact to influence evolutionary trajectories is difficult to assess. Genomic‐level approaches provide the opportunity to simultaneously consider these processes. Here, we examine the roles of selection and drift in shaping genomic diversity and divergence in historically documented sequential island colonizations by the silvereye (Zosterops lateralis). We provide the first empirical demonstration of the rapid appearance of highly diverged genomic regions following population founding, the position of which are highly idiosyncratic. As these regions rarely contained loci putatively under selection, it is most likely that these differences arise via the stochastic nature of the founding process. However, selection is required to explain rapid evolution of larger body size in insular silvereyes. Reconciling our genomic data with these phenotypic patterns suggests there may be many genomic routes to the island phenotype, which vary across populations. Finally, we show that accelerated divergence associated with multiple founding steps is the product of genome‐wide rather than localized differences, and that diversity erodes due to loss of rare alleles. However, even multiple founder events do not result in divergence and diversity levels seen in evolutionary older subspecies, and therefore do not provide a shortcut to speciation as proposed by founder‐effect speciation models.
    Keywords Zosterops ; birds ; body size ; ecology ; evolution ; founder effect ; genetic variation ; genomics ; phenotype
    Language English
    Dates of publication 2021-06
    Size p. 2495-2510.
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note NAL-AP-2-clean ; JOURNAL ARTICLE
    ZDB-ID 1126687-9
    ISSN 1365-294X ; 0962-1083
    ISSN (online) 1365-294X
    ISSN 0962-1083
    DOI 10.1111/mec.15898
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  5. Article: The wild ancestors of domestic animals as a neglected and threatened component of biodiversity

    Smith, William J. / Quilodrán, Claudio S. / Jezierski, Michał T. / Sendell‐Price, Ashley T. / Clegg, Sonya M.

    Conservation biology. 2022 June, v. 36, no. 3

    2022  

    Abstract: Domestic animals have immense economic, cultural, and practical value and have played pivotal roles in the development of human civilization. Many domesticates have, among their wild relatives, undomesticated forms representative of their ancestors. ... ...

    Abstract Domestic animals have immense economic, cultural, and practical value and have played pivotal roles in the development of human civilization. Many domesticates have, among their wild relatives, undomesticated forms representative of their ancestors. Resurgent interest in these ancestral forms has highlighted the unclear genetic status of many, and some are threatened with extinction by hybridization with domestic conspecifics. We considered the contemporary status of these ancestral forms relative to their scientific, practical, and ecological importance; the varied impacts of wild–domestic hybridization; and the challenges and potential resolutions involved in conservation efforts. Identifying and conserving ancestral forms, particularly with respect to disentangling patterns of gene flow from domesticates, is complex because of the lack of available genomic and phenotypic baselines. Comparative behavioral, ecological, and genetic studies of ancestral‐type, feral, and domestic animals should be prioritized to establish the contemporary status of the former. Such baseline information will be fundamental in ensuring successful conservation efforts.
    Keywords biodiversity ; extinction ; gene flow ; genomics ; humans ; phenotype ; wildlife management
    Language English
    Dates of publication 2022-06
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 58735-7
    ISSN 1523-1739 ; 0888-8892
    ISSN (online) 1523-1739
    ISSN 0888-8892
    DOI 10.1111/cobi.13867
    Database NAL-Catalogue (AGRICOLA)

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    In stock of ZB MED Bonn / Germany

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  6. Article ; Online: Rapid morphological divergence following a human-mediated introduction: the role of drift and directional selection.

    Sendell-Price, Ashley T / Ruegg, Kristen C / Clegg, Sonya M

    Heredity

    2020  Volume 124, Issue 4, Page(s) 535–549

    Abstract: Theory predicts that when populations are established by few individuals, random founder effects can facilitate rapid phenotypic divergence even in the absence of selective processes. However, empirical evidence from historically documented colonisations ...

    Abstract Theory predicts that when populations are established by few individuals, random founder effects can facilitate rapid phenotypic divergence even in the absence of selective processes. However, empirical evidence from historically documented colonisations suggest that, in most cases, drift alone is not sufficient to explain the rate of morphological divergence. Here, using the human-mediated introduction of the silvereye (Zosterops lateralis) to French Polynesia, which represents a potentially extreme example of population founding, we reassess the potential for morphological shifts to arise via drift alone. Despite only 80 years of separation from their New Zealand ancestors, French Polynesian silvereyes displayed significant changes in body and bill size and shape, most of which could be accounted for by drift, without the need to invoke selection. However, signatures of selection at genes previously identified as candidates for bill size and body shape differences in a range of bird species, also suggests a role for selective processes in driving morphological shifts within this population. Twenty-four SNPs in our RAD-Seq dataset were also found to be strongly associated with phenotypic variation. Hence, even under population founding extremes, when it is difficult to reject drift as the sole mechanism based on rate tests of phenotypic shifts, the additional role of divergent natural selection in novel environments can be revealed at the level of the genome.
    MeSH term(s) Animals ; Genetic Drift ; Genome ; Introduced Species ; New Zealand ; Passeriformes/anatomy & histology ; Passeriformes/genetics ; Polymorphism, Single Nucleotide ; Polynesia ; Selection, Genetic
    Language English
    Publishing date 2020-02-20
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2423-5
    ISSN 1365-2540 ; 0018-067X
    ISSN (online) 1365-2540
    ISSN 0018-067X
    DOI 10.1038/s41437-020-0298-8
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    Ub I Zs.154: Show issues Location:
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  7. Article ; Online: An island-hopping bird reveals how founder events shape genome-wide divergence.

    Sendell-Price, Ashley T / Ruegg, Kristen C / Robertson, Bruce C / Clegg, Sonya M

    Molecular ecology

    2021  Volume 30, Issue 11, Page(s) 2495–2510

    Abstract: When populations colonize new areas, both strong selection and strong drift can be experienced due to novel environments and small founding populations, respectively. Empirical studies have predominantly focused on the phenotype when assessing the role ... ...

    Abstract When populations colonize new areas, both strong selection and strong drift can be experienced due to novel environments and small founding populations, respectively. Empirical studies have predominantly focused on the phenotype when assessing the role of selection, and limited neutral-loci when assessing founder-induced loss of diversity. Consequently, the extent to which processes interact to influence evolutionary trajectories is difficult to assess. Genomic-level approaches provide the opportunity to simultaneously consider these processes. Here, we examine the roles of selection and drift in shaping genomic diversity and divergence in historically documented sequential island colonizations by the silvereye (Zosterops lateralis). We provide the first empirical demonstration of the rapid appearance of highly diverged genomic regions following population founding, the position of which are highly idiosyncratic. As these regions rarely contained loci putatively under selection, it is most likely that these differences arise via the stochastic nature of the founding process. However, selection is required to explain rapid evolution of larger body size in insular silvereyes. Reconciling our genomic data with these phenotypic patterns suggests there may be many genomic routes to the island phenotype, which vary across populations. Finally, we show that accelerated divergence associated with multiple founding steps is the product of genome-wide rather than localized differences, and that diversity erodes due to loss of rare alleles. However, even multiple founder events do not result in divergence and diversity levels seen in evolutionary older subspecies, and therefore do not provide a shortcut to speciation as proposed by founder-effect speciation models.
    MeSH term(s) Animals ; Founder Effect ; Genetic Variation ; Genome/genetics ; Passeriformes/genetics ; Phenotype ; Selection, Genetic
    Language English
    Publishing date 2021-05-04
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1126687-9
    ISSN 1365-294X ; 0962-1083
    ISSN (online) 1365-294X
    ISSN 0962-1083
    DOI 10.1111/mec.15898
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  8. Article ; Online: Community-wide genome sequencing reveals 30 years of Darwin's finch evolution.

    Enbody, Erik D / Sendell-Price, Ashley T / Sprehn, C Grace / Rubin, Carl-Johan / Visscher, Peter M / Grant, B Rosemary / Grant, Peter R / Andersson, Leif

    Science (New York, N.Y.)

    2023  Volume 381, Issue 6665, Page(s) eadf6218

    Abstract: A fundamental goal in evolutionary biology is to understand the genetic architecture of adaptive traits. Using whole-genome data of 3955 of Darwin's finches on the Galápagos Island of Daphne Major, we identified six loci of large effect that explain 45% ... ...

    Abstract A fundamental goal in evolutionary biology is to understand the genetic architecture of adaptive traits. Using whole-genome data of 3955 of Darwin's finches on the Galápagos Island of Daphne Major, we identified six loci of large effect that explain 45% of the variation in the highly heritable beak size of
    MeSH term(s) Animals ; Beak/anatomy & histology ; Ecuador ; Finches/anatomy & histology ; Finches/genetics ; Gene Frequency ; Metagenomics ; Selection, Genetic ; Adaptation, Biological ; Genetic Speciation ; Genetic Introgression ; Genetic Loci
    Language English
    Publishing date 2023-09-29
    Publishing country United States
    Document type Journal Article
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.adf6218
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    Zs.MG 77: Show issues

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  9. Article ; Online: Limited domestic introgression in a final refuge of the wild pigeon.

    Smith, William J / Sendell-Price, Ashley T / Fayet, Annette L / Schweizer, Teia M / Jezierski, Michał T / van de Kerkhof, Charles / Sheldon, Ben C / Ruegg, Kristen C / Kelly, Steven / Turnbull, Lindsay A / Clegg, Sonya M

    iScience

    2022  Volume 25, Issue 7, Page(s) 104620

    Abstract: Domesticated animals have been culturally and economically important throughout history. Many of their ancestral lineages are extinct or genetically endangered following hybridization with domesticated relatives. Consequently, they have been understudied ...

    Abstract Domesticated animals have been culturally and economically important throughout history. Many of their ancestral lineages are extinct or genetically endangered following hybridization with domesticated relatives. Consequently, they have been understudied compared to the ancestral lineages of domestic plants. The domestic pigeon
    Language English
    Publishing date 2022-07-01
    Publishing country United States
    Document type Journal Article
    ISSN 2589-0042
    ISSN (online) 2589-0042
    DOI 10.1016/j.isci.2022.104620
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  10. Article ; Online: Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks.

    Sendell-Price, Ashley T / Tulenko, Frank J / Pettersson, Mats / Kang, Du / Montandon, Margo / Winkler, Sylke / Kulb, Kathleen / Naylor, Gavin P / Phillippy, Adam / Fedrigo, Olivier / Mountcastle, Jacquelyn / Balacco, Jennifer R / Dutra, Amalia / Dale, Rebecca E / Haase, Bettina / Jarvis, Erich D / Myers, Gene / Burgess, Shawn M / Currie, Peter D /
    Andersson, Leif / Schartl, Manfred

    Nature communications

    2023  Volume 14, Issue 1, Page(s) 6628

    Abstract: Sharks occupy diverse ecological niches and play critical roles in marine ecosystems, often acting as apex predators. They are considered a slow-evolving lineage and have been suggested to exhibit exceptionally low cancer rates. These two features could ... ...

    Abstract Sharks occupy diverse ecological niches and play critical roles in marine ecosystems, often acting as apex predators. They are considered a slow-evolving lineage and have been suggested to exhibit exceptionally low cancer rates. These two features could be explained by a low nuclear mutation rate. Here, we provide a direct estimate of the nuclear mutation rate in the epaulette shark (Hemiscyllium ocellatum). We generate a high-quality reference genome, and resequence the whole genomes of parents and nine offspring to detect de novo mutations. Using stringent criteria, we estimate a mutation rate of 7×10
    MeSH term(s) Animals ; Mutation Rate ; Sharks/genetics ; Ecosystem
    Language English
    Publishing date 2023-10-19
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Intramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-023-42238-x
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