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  1. Article: Effect of Inbreeding Coefficient on Growth and Fitness Traits in a Closed Flock of Corriedale Sheep

    Nabi, Nusrat / Ganai, Nazir Ahmad / Shanaz, Syed / Aalam, Safeer / Shabir, Mir / Majid, Ruksana / Bukhari, Saba / Mir, Shakeel Ahmad / Hamadani, Ambreen / Rather, Mubashir Ali

    Indian journal of animal research. 2022 May, v. 56, no. 5

    2022  

    Abstract: The corriedale sheep breed was imported into J and K during sixties for use in improvement of local sheep and are maintained at Mountain Research Station of Sheep and Goat, SKUAST-K. The animals over the years were allowed to mate within the selected ... ...

    Abstract The corriedale sheep breed was imported into J and K during sixties for use in improvement of local sheep and are maintained at Mountain Research Station of Sheep and Goat, SKUAST-K. The animals over the years were allowed to mate within the selected animals of the flock as there was hardy any fresh importation of exotic animals from last 49 years due to which closed flock population was established within the farm. This has led to apprehensions over the loss of genetic diversity through years. The present study was to undertaken to evaluate the performance of Corriedale sheep under temperate climate and to estimate the inbreeding coefficient and its effect on growth and fitness traits of Corriedale sheep maintained at Mountain Research Centre for Sheep and Goat (MRCSG), F.V.Sc and A.H, SKUAST-K Shuhama, Kashmir. The information on performance and pedigree spanning over a period of 49 years (1969–2017) was collected and utilized for the study. The traits studied were birth weight (BW), weaning weight (WW), 6 months weight (6MW), 9 months weight (9MW) and 12 months weight (12MW) age at first lambing (AFL), litter size (LS), total lambs born per ewe (TLB) and survival rate (SR). The averages estimates for BW, WW, 6MW, 9MW, 12MW, AFL, LS, TLB and SR were 3.72±0.01 kg, 13.31±0.07 kg, 18.65±0.05 kg, 22.15±0.04 kg, 25.84±0.06 kg 807.20±4.34 days, 1.08±0.00, 4.83±0.03 and 80.76±1.98, respectively. The overall inbreeding coefficient (F) and proportion of population inbred (per cent) for Corriedale sheep were 18.3 and 43.3, respectively. The increased inbreeding coefficient had negative impact and highly significant (p<0.01) on all the traits under study except LS. The increased inbreeding coefficient (F) also had a negative impact on all the traits under study. With increase in the level of inbreeding there was a decrease in total body weight traits, lambs born per ewe and survival rate where as age at first lambing was increasing with the increase. he results indicated as decrease of 0.25 kg, 1.45 kg, 5.04 kg, 5.53 kg and 5.48 kg in body weight of the animals at birth, weaning weight, six months, nine months and twelve months from 1969–2017. To overcome the negative impact of inbreeding coefficient in the flock introduction of genetic variability through importation of Corriedale germplasm into the farm is highly recommended.
    Keywords Corriedale ; animal research ; birth weight ; ewes ; farms ; flocks ; genetic variation ; germplasm ; litter size ; pedigree ; survival rate ; temperate zones ; India
    Language English
    Dates of publication 2022-05
    Size p. 525-530.
    Publishing place Agricultural Research Communication Centre
    Document type Article
    ISSN 0976-0555
    DOI 10.18805/IJAR.B-4254
    Database NAL-Catalogue (AGRICOLA)

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  2. Article ; Online: Pathogenesis-Related Gene Expression in Response to Trachyspermum ammi Supplementation Along With Probiotics in Chicken Salmonellosis and Insights in Drug Therapeutics

    Zulfqarul Haq / Syed Mudasir Ahmad / Ishrat Bashir / Mashooq Ahmad Dar / Afnan Saleem / Azmat Alam Khan / Mohammad Iqbal Yatoo / Shabir Mir / Ankur Rastogi / Mohd Isfaqul Hussain / Riaz A. Shah / Basharat Bhat

    Frontiers in Veterinary Science, Vol

    2022  Volume 9

    Abstract: Salmonella enterica serovar typhimurium (S. typhimurium) is the leading cause of foodborne illness. Since Salmonella continues to have a detrimental effect on public health, there is an ongoing need to develop more advanced methods for combating ... ...

    Abstract Salmonella enterica serovar typhimurium (S. typhimurium) is the leading cause of foodborne illness. Since Salmonella continues to have a detrimental effect on public health, there is an ongoing need to develop more advanced methods for combating Salmonellosis in foods before they reach consumers. In addition, the quest for alternative natural products has recently intensified due to increasingly stringent regulations regarding the use of antibiotics as growth promoters and consumer demand for antibiotic-free poultry products. This study evaluated the effect of Ajwain extract (AJE) on immune response and antioxidant status in broiler chicks challenged with Salmonella typhimurium. The chicks were infected with S. typhimurium and were divided into the different groups, except for the control group (CON). The challenged chicks received different treatments with 3 × 109 colony-forming unit (CFU) AciproTM-WS probiotic (PRO), 200 mg/kg Ajwain extract (AJE), 200 mg/100 kg of enrofloxacin (ENR), and a combination of 3 × 109 CFU AciproTM-WS probiotic and 200 mg/kg Ajwain extract (COM). Five days posttreatment, the tissue samples (liver and spleen) were analyzed. The results showed that basal diet supplemented with Ajwain extract (AJE) and a combination of probiotic and Ajwain extract (COM) significantly (P < 0.0.5) reduced the cytokine expression in broiler chicks challenged with S. typhimurium. Our findings suggest that AJE can clear the bacterial infection, improve antioxidant status, and suppress the inflammation response. Additionally, AJE supplementation significantly mitigated the S. typhimurium-induced increase in the interleukin-6 (IL-6) (liver and spleen), interleukin-8 (IL-8) (liver and spleen), interleukin-17A (IL-17A) (liver and spleen), and inducible nitric oxide (iNOS) (spleen and liver) levels (P < 0.05). We conclude that Ajwain is an efficient feed additive with antioxidant and anti-inflammatory properties. The interaction networks developed in this study provide a novel lead that could be targeted ...
    Keywords Salmonella infection ; chicken ; dietary plant extracts ; gene expression ; antioxidant activity (AA) ; drug therapeutics ; Veterinary medicine ; SF600-1100
    Language English
    Publishing date 2022-06-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article: A study on biological rhythms of Himalayan yaks

    Iqbal Yatoo, Mohd / Shabir, Mir / Kubrevi, Syed Shafat / Dar, Rukhsar Ahmad / Angmo, Kunzes / Kanwar, Maheshwar Singh / Bhat, Riyaz Ahmad / Muheet / Parray, Oveas Raffiq

    Biological rhythm research. 2020 Oct. 02, v. 51, no. 7

    2020  

    Abstract: This study explores biological rhythms in Himalayan yaks. Indicators of reproductive, physiological rhythms and health were evaluated in 26 representative yaks from as many yak herds in 26 villages/hamlets of Changthang Ladakh (India). Average life span ( ...

    Abstract This study explores biological rhythms in Himalayan yaks. Indicators of reproductive, physiological rhythms and health were evaluated in 26 representative yaks from as many yak herds in 26 villages/hamlets of Changthang Ladakh (India). Average life span (20.57 ± 0.39 years), body weight (200–650 kg), age of puberty (2.1–2.9 years), oestrus period (21.1 ± 0.29 days), oestrus duration (16.9 ± 0.7 h), and gestation length (259.73 ± 1.48 days) was recorded. Seasonal breeding (spring/summer) with parturition cycle starting in spring season, was noticed. Single calving and singlet births were noted. Migration starts in April–May and returns in September–October. Common feeding practice includes pasture grazing. Hemoglobin (g/dl), packed cell volume (%), total erythrocytic count (x10⁶) and total leucocytic count (x10³) ranged from 12.29-14.56, 36.88-43.7, 7.28-7.79, and 8.43-7.15 during summer and winter, respectively. Rectal temperature (◦F) was 99.78-101.13, respiration rate (breaths per minute) was 34.23-65.38 and heart rate (beats per minute) was 68.65-99.04 during winter and summer, respectively. Seasonal cyclicity of common infectious and non-infectious diseases was noted. In conclusion, this study provides baseline data of biological rhythms of yaks and elaborates their seasonal variation with emphasis on future management prospects.
    Keywords body temperature ; body weight ; cell respiration ; estrus ; gestation period ; heart rate ; hemoglobin ; longevity ; pastures ; periodicity ; puberty ; research ; seasonal variation ; spring ; summer ; winter ; yaks ; India
    Language English
    Dates of publication 2020-1002
    Size p. 1087-1094.
    Publishing place Taylor & Francis
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 1185065-6
    ISSN 1744-4179 ; 0929-1016
    ISSN (online) 1744-4179
    ISSN 0929-1016
    DOI 10.1080/09291016.2019.1579883
    Database NAL-Catalogue (AGRICOLA)

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  4. Article: A study on biological rhythms of Himalayan Pashmina goats

    Iqbal Yatoo, Mohd / Bhat, Riyaz Ahmad / Muheet / Parray, Oveas Raffiq / Shabir, Mir / Kubrevi, Syed Shafat / Dar, Rukhsar Ahmad / Angmo, Kunzes / Kanwar, Maheshwar Singh

    Biological rhythm research. 2020 Oct. 02, v. 51, no. 7

    2020  

    Abstract: Biological rhythms may play an important role in the physio-reproductive lifecycle of Pashmina goats. However, such a study is lacking. Present study focuses on same. A total of 30 female Pashmina goats (N = 30) from 3 flocks (n = 10) having 10 animals ... ...

    Abstract Biological rhythms may play an important role in the physio-reproductive lifecycle of Pashmina goats. However, such a study is lacking. Present study focuses on same. A total of 30 female Pashmina goats (N = 30) from 3 flocks (n = 10) having 10 animals each were selected randomly in 3 villages of Changthang, Ladakh (India). Average life span was 9.93 ± 0.462 years, body weight of adult female was 23.0 ± 1.08 kg and age of puberty was 11.93 ± 0.55 months. Average duration of oestrus cycle was 20.73 ± 0.23 days and that of standing estrus was 36.40 ± 1.67 h. Seasonal breeding was noted with breeding cycle being influenced by light hours. Average gestation length was 149.5 ± 1.05 days, frequently single kidding and usually singlets were born. Pashmina wool grows during winter season and starts shedding from spring. Seasonal cyclicity of diseases including neonatal diarrhea, endo-ectoparasitic infections, and respiratory infections [contagious caprine pleuropneumonia (CCPP)/peste des petits ruminants (PPR)] was noted. No significant difference (p > 0.05) of biological rhythms was noted in the three villages. This study provides the baseline data for biological rhythms of Pashmina goats that can have both physio-biological- and production- related importance.
    Keywords adults ; body weight ; contagious caprine pleuropneumonia ; diarrhea ; estrus ; females ; gestation period ; longevity ; periodicity ; puberty ; research ; spring ; winter ; wool ; India
    Language English
    Dates of publication 2020-1002
    Size p. 1018-1025.
    Publishing place Taylor & Francis
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 1185065-6
    ISSN 1744-4179 ; 0929-1016
    ISSN (online) 1744-4179
    ISSN 0929-1016
    DOI 10.1080/09291016.2019.1571703
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: The prevalence of transfusion-transmitted infections and nucleic acid testing among blood donors in Majmaah, Saudi Arabia

    Mohammed Alaidarous / Ranjay K. Choudhary / Mohamed I. Waly / Shabir Mir / Abdulaziz Bin Dukhyil / Saeed S. Banawas / Bader M. Alshehri

    Journal of Infection and Public Health, Vol 11, Iss 5, Pp 702-

    2018  Volume 706

    Abstract: Background: Few studies discussed the prevalence of TTIs in Saudi donor blood samples. Thus, this study investigated the prevalence of hepatitis B virus (HBV), hepatitis C virus (HCV), human immunodeficiency virus (HIV), human T-lymphotropic virus (HTLV), ...

    Abstract Background: Few studies discussed the prevalence of TTIs in Saudi donor blood samples. Thus, this study investigated the prevalence of hepatitis B virus (HBV), hepatitis C virus (HCV), human immunodeficiency virus (HIV), human T-lymphotropic virus (HTLV), syphilis and malaria in such samples to determine the efficacy of conducting serological and NATs on blood donors at King Khalid General Hospital in Majmaah, Saudi Arabia. Methods: A total of 3028 donated blood units were collected from August 2015 to March 2017. Serum samples were screened for hepatitis B surface antigens (HBsAgs), HBsAbs, total anti-core antibodies (HBcAbs), HCV antigens and HIV Ab/Ag combinations. Additionally, plasma was screened for syphilis (TPHA) and HTLV. Samples were also tested for malaria with rapid malaria antigen tests. Finally, NATs were performed for the simultaneous direct detection of HBV, HCV and HIV in each sample. Results: Out of the 3028 blood samples, 10 (0.33%) reacted to HBsAgs; 12 (0.40%) reacted to HCV antigens; 4 (0.13%) reacted to HIV Ab/Ag combinations; 6 (0.20%) reacted to HTLV antibodies; 297 (9.81%) reacted to HBcAbs and 236 (7.80%) reacted to HBsAbs. Additionally, NATs showed that 14 (0.46%) reacted to NAT-HBV; 20 (0.66%) samples were reacted to NAT-HCV and 2 (0.07%) samples reacted to NAT-HIV. Finally, 16 (0.53%) were positive for syphilis. No samples were positive for malaria. Conclusions: The results indicated that NATs are more effective than serology tests for detecting TTIs. Moreover, correlations between standard serology tests and NATs indicated that using NATs could improve test sensitivities and decrease residual risks of TTIs and ensure safe blood transfusions. Keywords: Transfusion-transmitted infections, Nucleic acid testing, Seroprevalence, Blood transfusion, Majmaah
    Keywords Infectious and parasitic diseases ; RC109-216 ; Public aspects of medicine ; RA1-1270
    Subject code 630
    Language English
    Publishing date 2018-09-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Deep Insights in Circular RNAs

    Peerzada Tajamul Mumtaz / Qamar Taban / Mashooq Ahmad Dar / Shabir Mir / Zulfkar ul Haq / Sajad Majeed Zargar / Riaz Ahmad Shah / Syed Mudasir Ahmad

    Biological Procedures Online, Vol 22, Iss 1, Pp 1-

    from biogenesis to therapeutics

    2020  Volume 16

    Abstract: Abstract Circular RNAs (circRNAs) have emerged as a universal novel class of eukaryotic non-coding RNA (ncRNA) molecules and are becoming a new research hotspot in RNA biology. They form a covalent loop without 5′ cap and 3′ tail, unlike their linear ... ...

    Abstract Abstract Circular RNAs (circRNAs) have emerged as a universal novel class of eukaryotic non-coding RNA (ncRNA) molecules and are becoming a new research hotspot in RNA biology. They form a covalent loop without 5′ cap and 3′ tail, unlike their linear counterparts. Endogenous circRNAs in mammalian cells are abundantly conserved and discovered so far. In the biogenesis of circRNAs exonic, intronic, reverse complementary sequences or RNA-binding proteins (RBPs) play a very important role. Interestingly, the majority of them are highly conserved, stable, resistant to RNase R and show developmental-stage/tissue-specific expression. CircRNAs play multifunctional roles as microRNA (miRNA) sponges, regulators of transcription and post-transcription, parental gene expression and translation of proteins in various diseased conditions. Growing evidence shows that circRNAs play an important role in neurological disorders, atherosclerotic vascular disease, and cancer and potentially serve as diagnostic or predictive biomarkers due to its abundance in various biological samples. Here, we review the biogenesis, properties, functions, and impact of circRNAs on various diseases. Graphical Abstract
    Keywords Circular RNA ; Biogenesis ; MicroRNA sponge ; Gene expression regulation ; Disease biomarker ; Medicine (General) ; R5-920 ; Biology (General) ; QH301-705.5
    Subject code 612
    Language English
    Publishing date 2020-05-01T00:00:00Z
    Publisher BMC
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: Polymorphism analysis of BMPR1B gene by forced RFLP and PCR-SSCP techniques and expression of the mutation in introgressed sheep.

    Ganai, Tasleem Ahmad Shamas / Misra, Siddhartha Sarathi / Shabir, Mir

    Tropical animal health and production

    2011  Volume 44, Issue 2, Page(s) 277–283

    Abstract: The present study was conducted to screen Kashmir valley sheep with history of prolificacy for the presence of FecB mutation. Forced polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and single strand conformation polymorphism ...

    Abstract The present study was conducted to screen Kashmir valley sheep with history of prolificacy for the presence of FecB mutation. Forced polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and single strand conformation polymorphism (SSCP) techniques were employed to detect any polymorphism present in bone morphogenetic protein receptor type 1B (BMPR1B) gene. Further, it was aimed at introgressing the FecB mutation into nonprolific noncarrier sheep. A 140-bp fragment of BMPR1B gene was amplified from isolated genomic DNA and subjected to forced RFLP with restriction enzyme AvaII. Three different RFLP patterns were identified. SSCP analysis showed one-to-one correspondence with RFLP patterns. Sequencing of the samples showing different patterns revealed that the wild (+) and mutant (B) alleles were different by a single nucleotide substitution in the form of A109G from wild to mutant allele. It led to change in amino acid from Glutamine (Q) to Arginine (R) from wild to mutant allele. The mutation was only detected in NARI-Suwarna and their crosses; all Kashmir valley sheep with prolific history lacked it. The + allele was abundant in the studied population. The FecB mutation was introgressed in nonprolific noncarrier sheep by crossing ewes with NARI-Suwarna rams possessing the mutation. First generation crossing produced heterozygous (B+) progeny. Some of the F(1) heterozygous ewes gave birth to twins when mated to unrelated NARI-Suwarna rams. It showed that FecB mutation was successfully expressing in those crosses.
    MeSH term(s) Amino Acid Sequence ; Animals ; Base Sequence ; Bone Morphogenetic Protein Receptors/genetics ; DNA/chemistry ; DNA/genetics ; Fertility/genetics ; Genetic Variation ; Genotype ; Molecular Sequence Data ; Polymerase Chain Reaction/veterinary ; Polymorphism, Restriction Fragment Length ; Polymorphism, Single Nucleotide ; Sequence Alignment ; Sequence Analysis, DNA ; Sheep/genetics
    Chemical Substances DNA (9007-49-2) ; Bone Morphogenetic Protein Receptors (EC 2.7.11.30)
    Language English
    Publishing date 2011-11-16
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 603363-5
    ISSN 1573-7438 ; 0049-4747
    ISSN (online) 1573-7438
    ISSN 0049-4747
    DOI 10.1007/s11250-011-0015-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Gross morphometry of pectoral girdle of domestic geese (Anser anser domesticus)

    Shabir, Mir / Hamadani, Henna / Khan, Massarat / Baba, M.A / Khan, Azmatalam

    Indian journal of poultry science. 2013 Aug., v. 48, no. 2

    2013  

    Abstract: Pectoral girdle of adult domestic geese (Anser anser domesticus) of Kashmir was studied. The girdle comprised of three bones viz. scapula, coracoid and clavicle. The scapula was sword shaped with proximal extremity and a blade. The length and maximum ... ...

    Abstract Pectoral girdle of adult domestic geese (Anser anser domesticus) of Kashmir was studied. The girdle comprised of three bones viz. scapula, coracoid and clavicle. The scapula was sword shaped with proximal extremity and a blade. The length and maximum width of scapula were 10.50 cm and 1.30 cm respectively. The clavicle was in the form of thick curved plate to join the bone of opposite side forming the broad ‘U’ shaped furculum with rudimentary hypocleidium. The length and maximum width of clavicle were 10.00 cm and 4.5 cm, respectively. Coracoid was directed downwards and backwards to articulate the sternum distally. The length was 1.50 cm and width of distal extremity (3.80 cm) was about twice that of proximal one (3.80 cm). Proximal extremity of scapula, coracoid and clavicle united to form foramen triosseum. Diameter of foramen triosseum was 0.60 cm. It is concluded that the pectoral girdle of domestic geese comprised of three bones viz. scapula, clavicle and coracoids with scapula sword shaped and clavicle having ‘U’ shaped furculum. The proximal extremity of coracoid was hook like and articulated with scapula and clavicle to form foramen triosseum.
    Keywords Anser anser ; adults ; clavicle ; coracoid ; geese ; morphometry ; scapula ; shoulders ; sternum ; India
    Language English
    Dates of publication 2013-08
    Size p. 273-275.
    Publishing place Indian Poultry Science Association
    Document type Article
    ISSN 0974-8180
    Database NAL-Catalogue (AGRICOLA)

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  9. Article: Polymorphism analysis of BMPR1B gene by forced RFLP and PCR-SSCP techniques and expression of the mutation in introgressed sheep

    Ganai, Tasleem Ahmad Shamas / Misra, Siddhartha Sarathi / Shabir, Mir

    Tropical animal health and production. 2012 Feb., v. 44, no. 2

    2012  

    Abstract: The present study was conducted to screen Kashmir valley sheep with history of prolificacy for the presence of FecB mutation. Forced polymerase chain reaction–restriction fragment length polymorphism (PCR–RFLP) and single strand conformation polymorphism ...

    Abstract The present study was conducted to screen Kashmir valley sheep with history of prolificacy for the presence of FecB mutation. Forced polymerase chain reaction–restriction fragment length polymorphism (PCR–RFLP) and single strand conformation polymorphism (SSCP) techniques were employed to detect any polymorphism present in bone morphogenetic protein receptor type 1B (BMPR1B) gene. Further, it was aimed at introgressing the FecB mutation into nonprolific noncarrier sheep. A 140-bp fragment of BMPR1B gene was amplified from isolated genomic DNA and subjected to forced RFLP with restriction enzyme AvaII. Three different RFLP patterns were identified. SSCP analysis showed one-to-one correspondence with RFLP patterns. Sequencing of the samples showing different patterns revealed that the wild (+) and mutant (B) alleles were different by a single nucleotide substitution in the form of A109G from wild to mutant allele. It led to change in amino acid from Glutamine (Q) to Arginine (R) from wild to mutant allele. The mutation was only detected in NARI-Suwarna and their crosses; all Kashmir valley sheep with prolific history lacked it. The + allele was abundant in the studied population. The FecB mutation was introgressed in nonprolific noncarrier sheep by crossing ewes with NARI-Suwarna rams possessing the mutation. First generation crossing produced heterozygous (B+) progeny. Some of the F1 heterozygous ewes gave birth to twins when mated to unrelated NARI-Suwarna rams. It showed that FecB mutation was successfully expressing in those crosses.
    Keywords DNA ; alleles ; arginine ; bone morphogenetic proteins ; crossing ; enzymes ; ewes ; glutamine ; parturition ; progeny ; rams ; receptors ; restriction fragment length polymorphism ; single-stranded conformational polymorphism ; twins ; valleys ; India
    Language English
    Dates of publication 2012-02
    Size p. 277-283.
    Publishing place Springer-Verlag
    Document type Article
    ZDB-ID 603363-5
    ISSN 1573-7438 ; 0049-4747
    ISSN (online) 1573-7438
    ISSN 0049-4747
    DOI 10.1007/s11250-011-0015-y
    Database NAL-Catalogue (AGRICOLA)

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