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  1. Article ; Online: Pharmacological approaches to promote cell death of latent HIV reservoirs.

    Pinzone, Marilia Rita / Shan, Liang

    Current opinion in HIV and AIDS

    2023  Volume 19, Issue 2, Page(s) 56–61

    Abstract: Purpose of review: HIV requires lifelong antiviral treatment due to the persistence of a reservoir of latently infected cells. Multiple strategies have been pursued to promote the death of infected cells.: Recent findings: Several groups have focused ...

    Abstract Purpose of review: HIV requires lifelong antiviral treatment due to the persistence of a reservoir of latently infected cells. Multiple strategies have been pursued to promote the death of infected cells.
    Recent findings: Several groups have focused on multipronged approaches to induce apoptosis of infected cells. One approach is to combine latency reversal agents with proapoptotic compounds and cytotoxic T cells to first reactivate and then clear infected cells. Other strategies include using natural killer cells or chimeric antigen receptor cells to decrease the size of the reservoir.A novel strategy is to promote cell death by pyroptosis. This mechanism relies on the activation of the caspase recruitment domain-containing protein 8 (CARD8) inflammasome by the HIV protease and can be potentiated by nonnucleoside reverse transcriptase inhibitors.
    Summary: The achievement of a clinically significant reduction in the size of the reservoir will likely require a combination strategy since none of the approaches pursued so far has been successful on its own in clinical trials. This discrepancy between promising in vitro findings and modest in vivo results highlights the hurdles of identifying a universally effective strategy given the wide heterogeneity of the HIV reservoirs in terms of tissue location, capability to undergo latency reversal and susceptibility to cell death.
    MeSH term(s) Humans ; Virus Latency ; HIV Infections ; CD4-Positive T-Lymphocytes ; HIV-1/physiology ; Cell Death ; Neoplasm Proteins/metabolism ; Neoplasm Proteins/pharmacology ; Neoplasm Proteins/therapeutic use ; CARD Signaling Adaptor Proteins/metabolism
    Chemical Substances CARD8 protein, human ; Neoplasm Proteins ; CARD Signaling Adaptor Proteins
    Language English
    Publishing date 2023-12-20
    Publishing country United States
    Document type Review ; Journal Article
    ZDB-ID 2502511-9
    ISSN 1746-6318 ; 1746-630X
    ISSN (online) 1746-6318
    ISSN 1746-630X
    DOI 10.1097/COH.0000000000000837
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Inflammasomes in Human Immunodeficiency Virus Type 1 Infection.

    Wang, Qiankun / Shan, Liang

    Infectious diseases & immunity

    2022  Volume 2, Issue 4, Page(s) 248–252

    Abstract: Innate immune responses are the host's first line of defense against human immunodeficiency virus type 1 (HIV-1) infection, with pattern recognition receptors detecting viral specific pathogen-associated molecular patterns and initiating antiviral ... ...

    Abstract Innate immune responses are the host's first line of defense against human immunodeficiency virus type 1 (HIV-1) infection, with pattern recognition receptors detecting viral specific pathogen-associated molecular patterns and initiating antiviral responses. In response to HIV-1 nucleic acids or proteins, some pattern recognition receptors have the ability to assemble a large multiprotein complex called the inflammasome, which triggers pro-inflammatory cytokine release and a form of lytic programmed cell death called pyroptosis. Here, we review our current understanding of the mechanism of the inflammasome in sensing HIV-1 infection. Furthermore, we discuss the contribution of inflammasome activation in HIV-1 pathogenesis as well as potential strategies of targeting inflammasome activation for the treatment of HIV-1 infection.
    Language English
    Publishing date 2022-09-22
    Publishing country China
    Document type Journal Article ; Review
    ISSN 2693-8839
    ISSN (online) 2693-8839
    DOI 10.1097/ID9.0000000000000070
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Beyond Inhibition: A Novel Strategy of Targeting HIV-1 Protease to Eliminate Viral Reservoirs.

    Kim, Josh G / Shan, Liang

    Viruses

    2022  Volume 14, Issue 6

    Abstract: HIV-1 protease (PR) is a viral enzyme that cleaves the Gag and Gag-Pol polyprotein precursors to convert them into their functional forms, a process which is essential to generate infectious viral particles. Due to its broad substrate specificity, HIV-1 ... ...

    Abstract HIV-1 protease (PR) is a viral enzyme that cleaves the Gag and Gag-Pol polyprotein precursors to convert them into their functional forms, a process which is essential to generate infectious viral particles. Due to its broad substrate specificity, HIV-1 PR can also cleave certain host cell proteins. Several studies have identified host cell substrates of HIV-1 PR and described the potential impact of their cleavage on HIV-1-infected cells. Of particular interest is the interaction between PR and the caspase recruitment domain-containing protein 8 (CARD8) inflammasome. A recent study demonstrated that CARD8 can sense HIV-1 PR activity and induce cell death. While PR typically has low levels of intracellular activity prior to viral budding, premature PR activation can be achieved using certain non-nucleoside reverse transcriptase inhibitors (NNRTIs), resulting in CARD8 cleavage and downstream pyroptosis. Used together with latency reversal agents, the induction of premature PR activation to trigger CARD8-mediated cell killing may help eliminate latent reservoirs in people living with HIV. This represents a novel strategy of utilizing PR as an antiviral target through premature activation rather than inhibition. In this review, we discuss the viral and host substrates of HIV-1 protease and highlight potential applications and advantages of targeting CARD8 sensing of HIV-1 PR.
    MeSH term(s) CARD Signaling Adaptor Proteins/metabolism ; Fusion Proteins, gag-pol/metabolism ; HIV Protease/metabolism ; HIV-1/physiology ; Humans ; Neoplasm Proteins/metabolism ; Reverse Transcriptase Inhibitors/pharmacology
    Chemical Substances CARD Signaling Adaptor Proteins ; CARD8 protein, human ; Fusion Proteins, gag-pol ; Neoplasm Proteins ; Reverse Transcriptase Inhibitors ; HIV Protease (EC 3.4.23.-) ; p16 protease, Human immunodeficiency virus 1 (EC 3.4.23.-)
    Language English
    Publishing date 2022-05-28
    Publishing country Switzerland
    Document type Journal Article ; Review ; Research Support, N.I.H., Extramural
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v14061179
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: CARD8 makes coxsackievirus more "heartbreaking".

    Wang, Qiankun / Shan, Liang

    The Journal of experimental medicine

    2022  Volume 219, Issue 10

    Abstract: In this issue of JEM, Nadkarni et al. (2022. J. Exp. Med.https://doi.org/10.1084/jem.20212117) identify CARD8 as an innate sensor triggered by coxsackievirus B3 proteases to drive pyroptosis of aortic endothelial cells and cardiac myocytes, fueling viral ...

    Abstract In this issue of JEM, Nadkarni et al. (2022. J. Exp. Med.https://doi.org/10.1084/jem.20212117) identify CARD8 as an innate sensor triggered by coxsackievirus B3 proteases to drive pyroptosis of aortic endothelial cells and cardiac myocytes, fueling viral replication and heart inflammation.
    MeSH term(s) Endothelial Cells ; Myocytes, Cardiac ; Peptide Hydrolases ; Virus Replication
    Chemical Substances Peptide Hydrolases (EC 3.4.-)
    Language English
    Publishing date 2022-09-21
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 218343-2
    ISSN 1540-9538 ; 0022-1007
    ISSN (online) 1540-9538
    ISSN 0022-1007
    DOI 10.1084/jem.20221240
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Reconstruction of a three-dimensional temperature field in flames based on ES-ResNet18.

    Shan, Liang / Tang, Cheng-Feng / Hong, Bo / Kong, Ming

    Applied optics

    2024  Volume 63, Issue 8, Page(s) 1982–1990

    Abstract: Currently, the method of establishing the correspondence between the flame light field image and the temperature field by deep learning is widely used. Based on convolutional neural networks (CNNs), the reconstruction accuracy has been improved by ... ...

    Abstract Currently, the method of establishing the correspondence between the flame light field image and the temperature field by deep learning is widely used. Based on convolutional neural networks (CNNs), the reconstruction accuracy has been improved by increasing the depth of the network. However, as the depth of the network increases, it will lead to gradient explosion and network degradation. To further improve the reconstruction accuracy of the flame temperature field, this paper proposes an ES-ResNet18 model, in which SoftPool is used instead of MaxPool to preserve feature information more completely and efficient channel attention (ECA) is introduced in the residual block to reassign more weights to feature maps of critical channels. The reconstruction results of our method were compared with the CNN model and the original ResNet18 network. The results show that the average relative error and the maximum relative error of the temperature field reconstructed by the ES-ResNet18 model are 0.0203% and 0.1805%, respectively, which are reduced by one order of magnitude compared to the CNN model. Compared to the original ResNet18 network, they have decreased by 17.1% and 43.1%, respectively. Adding Gaussian noise to the flame light field images, when the standard deviation exceeds 0.03, the increase in reconstruction error of the ES-ResNet18 model is lower than that of ResNet18, demonstrating stronger anti-noise performance.
    Language English
    Publishing date 2024-04-03
    Publishing country United States
    Document type Journal Article
    ISSN 1539-4522
    ISSN (online) 1539-4522
    DOI 10.1364/AO.515383
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Linguistic dissection of nursing handoffs: Implications for patient safety in varied-acuity hospital settings.

    Galatzan, Benjamin J / Johnson, Elizabeth / Judson, Tonya / Shan, Liang

    Journal of clinical nursing

    2024  

    Abstract: Aim: This study examines the intricate language and communication patterns of nurse-to-nurse handoffs across three units with varying patient acuity levels and nurse-patient ratios, seeking to identify linguistic factors that may affect the quality of ... ...

    Abstract Aim: This study examines the intricate language and communication patterns of nurse-to-nurse handoffs across three units with varying patient acuity levels and nurse-patient ratios, seeking to identify linguistic factors that may affect the quality of information transfer and patient outcomes.
    Design: A mixed-methods cross-sectional design.
    Methods: This study used the Nurse-to-Nurse Transition of Care Communication Model to explore the content and meaning of language in nursing handoffs within a large academic medical centre. Data were collected on three units through digital audio recordings of 20 handoffs between June and September 2022, which were transcribed and analysed using the Linguistic Inquiry Word Count programme. Trustworthiness was established by adhering to COREQ and STROBE guidelines for qualitative and quantitative research, respectively.
    Results: Analysis revealed a preference for casual, narrative language across all units, with ICU nurses demonstrating a higher confidence and leadership in communication. Cognitive processes such as insight and causation were found to be underrepresented, indicating a potential area for miscommunication. Communication motives driven by affiliation were more pronounced in ICU settings, suggesting a strong collaborative nature. No significant differences were observed among the units post multiple testing adjustments. Speech dysfluencies were most pronounced in ICU handoffs, reflecting possible stress and cognitive overload.
    Conclusion: The study highlights the need for improved communication strategies such as interventions to enhance language clarity and incorporating technological tools into handoff processes to mitigate potential miscommunications and errors. The findings advance nursing science by highlighting the critical role of nuanced language in varied-acuity hospital settings and the necessity for structured nurse education in handoff communication and standardized handoff procedures.
    Implications for the profession and patient care: This study underscores the critical role of language in nurse-to-nurse handoffs. It calls for enhanced communication strategies, technology integration and training to reduce medical errors, improving patient outcomes in high-acuity hospital settings.
    Patient or public contribution: Nurses only.
    Language English
    Publishing date 2024-04-25
    Publishing country England
    Document type Journal Article
    ZDB-ID 1159483-4
    ISSN 1365-2702 ; 0962-1067 ; 1752-9816
    ISSN (online) 1365-2702
    ISSN 0962-1067 ; 1752-9816
    DOI 10.1111/jocn.17190
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: A Data-Driven Based Spatiotemporal Model Reduction for Microwave Heating Process with the Mixed Boundary Conditions

    Jiaqi Zhong / Shan Liang

    Processes, Vol 9, Iss 827, p

    2021  Volume 827

    Abstract: In this paper, a data-driven based spatiotemporal model reduction approach is proposed for predicting the temperature distribution and developing the computation speeds in the microwave heating process. Due to the mixed boundary conditions, it is ... ...

    Abstract In this paper, a data-driven based spatiotemporal model reduction approach is proposed for predicting the temperature distribution and developing the computation speeds in the microwave heating process. Due to the mixed boundary conditions, it is difficult for the traditional spectral method to directly obtain the analytical eigenfunctions. Motivated by the time/space separation theory, we first propose a general framework of spatiotemporal model reduction, which can effectively develop the computation speeds in the numerical analysis of multi-physical fields. Subsequently, the empirical eigenfunctions are generated by applying the Karhunen–Loève theory to decompose the snapshots. Then, the partial differential Equation (PDE) model is discretized into a class of recursive equations and transformed as the reduced-order ordinary differential Equation (ODE) model. Finally, the effectiveness and superiority of the proposed approach is demonstrated by a comparison study with a traditional method on the microwave heating Debye medium.
    Keywords spatiotemporal model reduction ; microwave heating ; mixed boundary conditions ; data-driven method ; Chemical technology ; TP1-1185 ; Chemistry ; QD1-999
    Subject code 518
    Language English
    Publishing date 2021-05-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article: Beyond Inhibition: A Novel Strategy of Targeting HIV-1 Protease to Eliminate Viral Reservoirs

    Kim, Josh G. / Shan, Liang

    Viruses. 2022 May 28, v. 14, no. 6

    2022  

    Abstract: HIV-1 protease (PR) is a viral enzyme that cleaves the Gag and Gag-Pol polyprotein precursors to convert them into their functional forms, a process which is essential to generate infectious viral particles. Due to its broad substrate specificity, HIV-1 ... ...

    Abstract HIV-1 protease (PR) is a viral enzyme that cleaves the Gag and Gag-Pol polyprotein precursors to convert them into their functional forms, a process which is essential to generate infectious viral particles. Due to its broad substrate specificity, HIV-1 PR can also cleave certain host cell proteins. Several studies have identified host cell substrates of HIV-1 PR and described the potential impact of their cleavage on HIV-1-infected cells. Of particular interest is the interaction between PR and the caspase recruitment domain-containing protein 8 (CARD8) inflammasome. A recent study demonstrated that CARD8 can sense HIV-1 PR activity and induce cell death. While PR typically has low levels of intracellular activity prior to viral budding, premature PR activation can be achieved using certain non-nucleoside reverse transcriptase inhibitors (NNRTIs), resulting in CARD8 cleavage and downstream pyroptosis. Used together with latency reversal agents, the induction of premature PR activation to trigger CARD8-mediated cell killing may help eliminate latent reservoirs in people living with HIV. This represents a novel strategy of utilizing PR as an antiviral target through premature activation rather than inhibition. In this review, we discuss the viral and host substrates of HIV-1 protease and highlight potential applications and advantages of targeting CARD8 sensing of HIV-1 PR.
    Keywords HIV infections ; RNA-directed DNA polymerase ; caspases ; inflammasomes ; people ; polyproteins ; pyroptosis ; substrate specificity
    Language English
    Dates of publication 2022-0528
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2516098-9
    ISSN 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v14061179
    Database NAL-Catalogue (AGRICOLA)

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  9. Article ; Online: CARD8 Inflammasome Activation by HIV-1 Protease.

    Clark, Kolin M / Wang, Qiankun / Shan, Liang

    Methods in molecular biology (Clifton, N.J.)

    2023  Volume 2641, Page(s) 67–79

    Abstract: The pattern recognition receptor CARD8 is an inflammasome sensor for intracellular HIV-1 protease activity. Previously, the only method for studying the CARD8 inflammasome has been through utilizing DPP8/DPP9 inhibitors including Val-boroPro (VbP) to ... ...

    Abstract The pattern recognition receptor CARD8 is an inflammasome sensor for intracellular HIV-1 protease activity. Previously, the only method for studying the CARD8 inflammasome has been through utilizing DPP8/DPP9 inhibitors including Val-boroPro (VbP) to modestly and nonspecifically activate the CARD8 inflammasome. The identification of HIV-1 protease as a target for sensing by CARD8 has opened the door for a new method of studying the underlying mechanism of CARD8 inflammasome activation. Additionally, triggering the CARD8 inflammasome offers a promising strategy for reducing HIV-1 latent reservoirs. Here we describe the methods to study CARD8 sensing of HIV-1 protease activity through non-nucleoside reverse transcriptase inhibitor (NNRTI)-mediated pyroptosis of HIV-1-infected immune cells and through an HIV and CARD8 co-transfection model.
    MeSH term(s) Inflammasomes/metabolism ; CARD Signaling Adaptor Proteins/metabolism ; Apoptosis Regulatory Proteins/metabolism ; HIV Protease
    Chemical Substances Inflammasomes ; CARD Signaling Adaptor Proteins ; p16 protease, Human immunodeficiency virus 1 (EC 3.4.23.-) ; Apoptosis Regulatory Proteins ; HIV Protease (EC 3.4.23.-)
    Language English
    Publishing date 2023-04-19
    Publishing country United States
    Document type Journal Article
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-3040-2_6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Caffeine in Hepatocellular Carcinoma: Cellular Assays, Animal Experiments, and Epidemiological Investigation.

    Shan, Liang / Zhao, Ning / Wang, Fengling / Zhai, Dandan / Liu, Jianjun / Lv, Xiongwen

    Journal of inflammation research

    2024  Volume 17, Page(s) 1589–1605

    Abstract: The use of caffeine in treating various liver diseases has made substantial progress in the past decade owing to advances in science, technology, and medicine. However, whether caffeine has a preventive effect on hepatocellular carcinoma (HCC) and its ... ...

    Abstract The use of caffeine in treating various liver diseases has made substantial progress in the past decade owing to advances in science, technology, and medicine. However, whether caffeine has a preventive effect on hepatocellular carcinoma (HCC) and its mechanism are still worth further investigation. In this review, we summarize and analyze the efficacy and safety of caffeine in the prevention of HCC. We conducted a review of articles published in PubMed and Web of Science in the past 2 decades until December 6, 2023, which were searched for using the terms "Caffeine" and "Hepatocellular Carcinoma." Studies have found that coffee intake is negatively correlated with HCC risk, especially caffeinated coffee. Recent studies have found that caffeine has beneficial effects on liver health, decreasing levels of enzymes responsible for liver damaging and slowing the progression of hepatic fibrosis and cirrhosis. Caffeine also acts against liver fibrosis through adenosine receptors (ARs), which promote tissue remodeling by inducing fibrin and collagen production. Additionally, new studies have found that moderate consumption of caffeinated beverages can decrease various the levels of various collagens in patients with chronic hepatitis C. Furthermore, polyphenolic compounds in coffee can improve fat homeostasis, reduce oxidative stress, and prevent liver steatosis and fibrosis. Moreover, many in vitro studies have shown that caffeine can protect liver cells and inhibit the activation and proliferation of hepatic stellate cells. Taken together, we describe the benefits of caffeine for liver health and highlight its potential values as a drug to prevent various hepatic diseases. As a protective agent of liver inflammation, non-selective AR inhibitor caffeine can inhibit the growth of HCC cells by inhibiting adenosine and AR binding to initiate immune response, providing a basis for the future development of caffeine as an adjuvant drug against HCC.
    Language English
    Publishing date 2024-03-11
    Publishing country New Zealand
    Document type Journal Article ; Review
    ZDB-ID 2494878-0
    ISSN 1178-7031
    ISSN 1178-7031
    DOI 10.2147/JIR.S424384
    Database MEDical Literature Analysis and Retrieval System OnLINE

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