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  1. Article ; Online: Resolving Hidden Solution Conformations of Hemoglobin Using IMS-IMS on a Cyclic Instrument.

    Sharon, Edie M / Henderson, Lucas W / Clemmer, David E

    Journal of the American Society for Mass Spectrometry

    2023  Volume 34, Issue 8, Page(s) 1559–1568

    Abstract: Ion mobility spectrometry-mass spectrometry (IMS-MS) experiments on a cyclic IMS instrument were used to examine heterogeneous distributions of structures found in the 15+ to 18+ charge states of the hemoglobin tetramer (Hb). The resolving power of IMS ... ...

    Abstract Ion mobility spectrometry-mass spectrometry (IMS-MS) experiments on a cyclic IMS instrument were used to examine heterogeneous distributions of structures found in the 15+ to 18+ charge states of the hemoglobin tetramer (Hb). The resolving power of IMS measurements is known to increase with increasing drift-region length. This effect is not significant for Hb charge states as peaks were shown to broaden with increasing drift-region length. This observation suggests that multiple structures with similar cross sections may be present. To examine this hypothesis, selections of drift time distributions were isolated and subsequently reinjected into the mobility region for additional separation. These IMS-IMS experiments demonstrate that selected regions separate further upon additional passes around the drift cell, consistent with the idea that initial resolving power was limited due to the presence of many closely related conformations. Additional variable temperature electrospray ionization (vT-ESI) experiments were conducted to study how changing the solution temperature affects solution conformations. Some features in these IMS-IMS studies were observed to change similarly with solution temperature compared to features in the single IMS distribution. Other features changed differently in the selected mobility data, indicating that solution structures that were obscured upon IMS analysis because of the complex heterogeneity of the original distribution are discernible after reducing the number of conformers that are analyzed by further IMS analysis. These results illustrate that the combination of vT-ESI with IMS-IMS is useful for resolving and exploring conformer distributions and stabilities in systems that exhibit a large degree of structural heterogeneity.
    MeSH term(s) Mass Spectrometry/methods ; Molecular Conformation ; Ion Mobility Spectrometry ; Temperature ; Hemoglobins
    Chemical Substances Hemoglobins
    Language English
    Publishing date 2023-07-07
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1073671-2
    ISSN 1879-1123 ; 1044-0305
    ISSN (online) 1879-1123
    ISSN 1044-0305
    DOI 10.1021/jasms.3c00032
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Stability of 20S Proteasome Configurations: Preopening the Axial Gate.

    Henderson, Lucas W / Sharon, Edie M / Gautam, Amit K S / Anthony, Adam J / Jarrold, Martin F / Russell, David H / Matouschek, Andreas / Clemmer, David E

    The journal of physical chemistry letters

    2023  Volume 14, Issue 21, Page(s) 5014–5017

    Abstract: Mass spectrometry studies of the stability of ... ...

    Abstract Mass spectrometry studies of the stability of the
    MeSH term(s) Proteasome Endopeptidase Complex/chemistry ; Proteasome Endopeptidase Complex/metabolism ; Saccharomyces cerevisiae/metabolism ; Proteolysis
    Chemical Substances Proteasome Endopeptidase Complex (EC 3.4.25.1)
    Language English
    Publishing date 2023-05-24
    Publishing country United States
    Document type Journal Article
    ISSN 1948-7185
    ISSN (online) 1948-7185
    DOI 10.1021/acs.jpclett.3c01040
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Analysis of Keratinocytic Exosomes from Diabetic and Nondiabetic Mice by Charge Detection Mass Spectrometry.

    Brown, Brooke A / Guda, Poornachander R / Zeng, Xuyao / Anthony, Adam / Couse, Andrew / Barnes, Lauren F / Sharon, Edie M / Trinidad, Jonathan C / Sen, Chandan K / Jarrold, Martin F / Ghatak, Subhadip / Clemmer, David E

    Analytical chemistry

    2022  Volume 94, Issue 25, Page(s) 8909–8918

    Abstract: Unresolved inflammation compromises diabetic wound healing. Recently, we reported that inadequate RNA packaging in murine wound-edge keratinocyte-originated exosomes ( ...

    Abstract Unresolved inflammation compromises diabetic wound healing. Recently, we reported that inadequate RNA packaging in murine wound-edge keratinocyte-originated exosomes (
    MeSH term(s) Animals ; Diabetes Mellitus, Experimental/pathology ; Exosomes/pathology ; Inflammation ; Keratinocytes ; Mass Spectrometry ; Mice
    Language English
    Publishing date 2022-06-14
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1508-8
    ISSN 1520-6882 ; 0003-2700
    ISSN (online) 1520-6882
    ISSN 0003-2700
    DOI 10.1021/acs.analchem.2c00453
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Analysis of Keratinocytic Exosomes from Diabetic and Nondiabetic Mice by Charge Detection Mass Spectrometry

    Brown, Brooke A. / Guda, Poornachander R. / Zeng, Xuyao / Anthony, Adam / Couse, Andrew / Barnes, Lauren F. / Sharon, Edie M. / Trinidad, Jonathan C. / Sen, Chandan K. / Jarrold, Martin F. / Ghatak, Subhadip / Clemmer, David E.

    Analytical chemistry. 2022 June 14, v. 94, no. 25

    2022  

    Abstract: Unresolved inflammation compromises diabetic wound healing. Recently, we reported that inadequate RNA packaging in murine wound-edge keratinocyte-originated exosomes (Exoκ) leads to persistent inflammation [Zhou, X.ACS Nano2020, 14(10), 12732−12748]. ... ...

    Abstract Unresolved inflammation compromises diabetic wound healing. Recently, we reported that inadequate RNA packaging in murine wound-edge keratinocyte-originated exosomes (Exoκ) leads to persistent inflammation [Zhou, X.ACS Nano2020, 14(10), 12732−12748]. Herein, we use charge detection mass spectrometry (CDMS) to analyze intact Exoκ isolated from a 5 day old wound-edge tissue of diabetic mice and a heterozygous nondiabetic littermate control group. In CDMS, the charge (z) and mass-to-charge ratio (m/z) of individual exosome particles are measured simultaneously, enabling the direct analysis of masses in the 1–200 MDa range anticipated for exosomes. These measurements reveal a broad mass range for Exoκ from ∼10 to >100 MDa. The m and z values for these exosomes appear to fall into families (subpopulations); a statistical modeling analysis partially resolves ∼10–20 Exoκ subpopulations. Complementary proteomics, immunofluorescence, and electron microscopy studies support the CDMS results that Exoκ from diabetic and nondiabetic mice vary substantially. Subpopulations having high z (>650) and high m (>44 MDa) are more abundant in nondiabetic animals. We propose that these high m and z particles may arise from differences in cargo packaging. The veracity of this idea is discussed in light of other recent CDMS results involving genome packaging in vaccines, as well as exosome imaging experiments. Characterization of intact exosome particles based on the physical properties of m and z provides a new means of investigating wound healing and suggests that CDMS may be useful for other pathologies.
    Keywords RNA ; analytical chemistry ; electron microscopy ; exosomes ; fluorescent antibody technique ; genome ; heterozygosity ; inflammation ; mass spectrometry ; mice ; proteomics
    Language English
    Dates of publication 2022-0614
    Size p. 8909-8918.
    Publishing place American Chemical Society
    Document type Article
    ZDB-ID 1508-8
    ISSN 1520-6882 ; 0003-2700
    ISSN (online) 1520-6882
    ISSN 0003-2700
    DOI 10.1021/acs.analchem.2c00453
    Database NAL-Catalogue (AGRICOLA)

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