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Article ; Online: Autoxidation of ascorbate mediates lysine

Yoshitake, Jun / Shibata, Takahiro / Chikazawa, Miho / Uchida, Koji

2023 Volume 56, Issue 11-12, Page(s) 749–759

Abstract: ... ...

Abstract	Protein
MeSH term(s)	Mice ; Animals ; Humans ; Lysine ; Mice, Inbred MRL lpr ; Proteins/metabolism ; Oxidation-Reduction ; Glyoxal
Chemical Substances	Lysine (K3Z4F929H6) ; glycolaldehyde (W0A0XPU08U) ; Proteins ; Glyoxal (50NP6JJ975)
Language	English
Publishing date	2023-02-07
Publishing country	England
Document type	Journal Article
ZDB-ID	1194130-3
ISSN	1029-2470 ; 1071-5762
ISSN (online)	1029-2470
ISSN	1071-5762
DOI	10.1080/10715762.2023.2174865
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Article ; Online: A Review of Treatment Methods Focusing on Human Induced Pluripotent Stem Cell-Derived Neural Stem/Progenitor Cell Transplantation for Chronic Spinal Cord Injury.

Shibata, Takahiro / Tashiro, Syoichi / Nakamura, Masaya / Okano, Hideyuki / Nagoshi, Narihito

Medicina (Kaunas, Lithuania)

2023 Volume 59, Issue 7

Abstract: Cell transplantation therapy using human induced pluripotent stem cell-derived neural stem/progenitor cells (hiPSC-NS/PCs) has attracted attention as a regenerative therapy for spinal cord injury (SCI), and its efficacy in treating the subacute phase of ... ...

Abstract	Cell transplantation therapy using human induced pluripotent stem cell-derived neural stem/progenitor cells (hiPSC-NS/PCs) has attracted attention as a regenerative therapy for spinal cord injury (SCI), and its efficacy in treating the subacute phase of SCI has been reported in numerous studies. However, few studies have focused on treatment in the chronic phase, which accounts for many patients, suggesting that there are factors that are difficult to overcome in the treatment of chronic SCI. The search for therapeutic strategies that focus on chronic SCI is fraught with challenges, and the combination of different therapies is thought to be the key to a solution. In addition, many issues remain to be addressed, including the investigation of therapeutic approaches for more severe injury models of chronic SCI and the acquisition of practical motor function. This review summarizes the current progress in regenerative therapy for SCI and discusses the prospects for regenerative medicine, particularly in animal models of chronic SCI.
MeSH term(s)	Animals ; Humans ; Induced Pluripotent Stem Cells/transplantation ; Cell Differentiation ; Spinal Cord Injuries/therapy ; Neural Stem Cells/transplantation ; Stem Cell Transplantation/methods ; Spinal Cord
Language	English
Publishing date	2023-07-01
Publishing country	Switzerland
Document type	Journal Article ; Review
ZDB-ID	2188113-3
ISSN	1648-9144 ; 1010-660X
ISSN (online)	1648-9144
ISSN	1010-660X
DOI	10.3390/medicina59071235
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Article ; Online: 15-Deoxy-Δ¹²,¹⁴-prostaglandin J₂ as an electrophilic mediator.

Shibata, Takahiro

Bioscience, biotechnology, and biochemistry

2015 Volume 79, Issue 7, Page(s) 1044–1049

Abstract: Lipid-derived electrophilic molecules are endogenously generated and are causally involved in many pathophysiological effects. Prostaglandin D2, a major cyclooxygenase product in a variety of tissues and cells, readily undergoes dehydration to yield the ... ...

Abstract	Lipid-derived electrophilic molecules are endogenously generated and are causally involved in many pathophysiological effects. Prostaglandin D2, a major cyclooxygenase product in a variety of tissues and cells, readily undergoes dehydration to yield the J-series PGs such as 15-deoxy-Δ(12,14)-PGJ2 (15d-PGJ2). Because of the electrophilic α,β-unsaturated ketone moiety present in its cyclopentenone ring, 15d-PGJ2 acts as an endogenous electrophile. 15d-PGJ2 can covalently react via the Michael addition reaction with critical cellular nucleophiles, such as the free cysteine residues of proteins that play a key role in the regulation of the intracellular signaling pathways. Covalent modification of cellular proteins by 15d-PGJ2 may be one of the most important mechanisms by which 15d-PGJ2 induces many biological responses involved in the pathophysiological effects associated with inflammation. This current review is intended to provide a comprehensive summary of 15d-PGJ2 as an endogenous electrophilic mediator of biological activities.
MeSH term(s)	Animals ; Antioxidants/metabolism ; Apoptosis/physiology ; Humans ; Inflammation/immunology ; Inflammation/metabolism ; Oxidation-Reduction ; Oxidative Stress ; Prostaglandin D2/analogs & derivatives ; Prostaglandin D2/chemistry ; Prostaglandin D2/immunology ; Prostaglandin D2/metabolism ; Proteins/metabolism ; Signal Transduction
Chemical Substances	15-deoxy-delta(12,14)-prostaglandin J2 ; Antioxidants ; Proteins ; Prostaglandin D2 (RXY07S6CZ2)
Language	English
Publishing date	2015
Publishing country	England
Document type	Journal Article ; Review
ZDB-ID	1106450-x
ISSN	1347-6947 ; 0916-8451
ISSN (online)	1347-6947
ISSN	0916-8451
DOI	10.1080/09168451.2015.1012149
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Zs.A 4647: Show issues

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Article ; Online: Protein adductomics: A comprehensive analysis of protein modifications by electrophiles.

Shibata, Takahiro / Uchida, Koji

Free radical biology & medicine

2019 Volume 144, Page(s) 218–222

Abstract: Human individuals are continually exposed to various exogenous and endogenous reactive electrophiles, which readily react with nucleophilic biomacromolecules, such as protein, and form a variety of covalent adducts. The covalent modifications of protein ... ...

Abstract	Human individuals are continually exposed to various exogenous and endogenous reactive electrophiles, which readily react with nucleophilic biomacromolecules, such as protein, and form a variety of covalent adducts. The covalent modifications of protein are thought to be involved in various physiological and pathological processes. Recently, the "adductome", a new concept that represents the totality of covalent adducts bound to nucleophilic biomolecules, has been offered as a useful technique for characterizing essentially all reactive electrophilic compounds in biological samples. The primary advantage of this approach is that non-targeted comprehensive analysis can readily be extended to investigate covalent adduct pattern of different situation of exposure and thereby makes it possible to detect/identify not only known but also unknown adducts. In this review, we provide a summary of the concept and methodology of protein adductomics, especially focusing on redox protein adductomics.
MeSH term(s)	Aldehydes/chemistry ; Cell Membrane/chemistry ; Cell Membrane/metabolism ; Cell Membrane/ultrastructure ; DNA Adducts/chemistry ; DNA Adducts/metabolism ; Eukaryotic Cells/chemistry ; Eukaryotic Cells/metabolism ; Eukaryotic Cells/ultrastructure ; Hemoglobins/chemistry ; Hemoglobins/metabolism ; Humans ; Lipids/chemistry ; Mass Spectrometry/methods ; Oxidation-Reduction ; Oxidative Stress ; Protein Interaction Mapping/methods ; Protein Processing, Post-Translational ; Serum Albumin, Human/chemistry ; Serum Albumin, Human/metabolism ; Signal Transduction
Chemical Substances	Aldehydes ; DNA Adducts ; Hemoglobins ; Lipids ; Serum Albumin, Human (ZIF514RVZR)
Language	English
Publishing date	2019-03-07
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Review
ZDB-ID	807032-5
ISSN	1873-4596 ; 0891-5849
ISSN (online)	1873-4596
ISSN	0891-5849
DOI	10.1016/j.freeradbiomed.2019.02.034
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Zs.A 2109: Show issues

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Article: [Peritoneal Mesothelioma Diagnosed with a Sister Mary Joseph's Nodule].

Kimura, Sho / Teranishi, Futoshi / Katada, Takeyasu / Koide, Shuji / Shibata, Takahiro / Nakai, Nozomu / Matsuo, Yoichi

Gan to kagaku ryoho. Cancer & chemotherapy

2023 Volume 50, Issue 13, Page(s) 1659–1661

Abstract: In August 2022, a 59-year-old female noted a mass in her umbilicus and sought evaluation at Toyokawa City Hospital. Abdominal computed tomography(CT)scan revealed a 1.6 cm mass in the umbilical region, ascites in the pelvis, and increased absorption in ... ...

Abstract	In August 2022, a 59-year-old female noted a mass in her umbilicus and sought evaluation at Toyokawa City Hospital. Abdominal computed tomography(CT)scan revealed a 1.6 cm mass in the umbilical region, ascites in the pelvis, and increased absorption in the omentum. Peritoneal dissemination of the carcinoma and Sister Mary Joseph's nodule due to an unknown primary tumor were suspected because no abnormalities were detected during upper and lower gastrointestinal endoscopy. She underwent an umbilical lumpectomy and diagnostic laparoscopy to establish a definitive diagnosis. The surgical findings included numerous white nodules throughout the abdominal cavity. The umbilical mass and omental white nodules were resected. A final diagnosis of epithelial peritoneal mesothelioma was made based on the histopathologic examination. In general, peritoneal mesothelioma has a poor prognosis, and early treatment is essential; however, making a timely definitive diagnosis is difficult. Peritoneal mesothelioma should be included in the differential diagnosis for a patient with unexplained ascites and abdominal pain. Diagnostic laparoscopy and biopsy will facilitate the establishment of a definitive diagnosis.
MeSH term(s)	Humans ; Female ; Middle Aged ; Sister Mary Joseph's Nodule/diagnosis ; Sister Mary Joseph's Nodule/surgery ; Ascites ; Umbilicus/surgery ; Umbilicus/pathology ; Skin Neoplasms/pathology ; Mesothelioma/diagnosis ; Mesothelioma/surgery
Language	Japanese
Publishing date	2023-10-28
Publishing country	Japan
Document type	Case Reports ; English Abstract ; Journal Article
ZDB-ID	604842-0
ISSN	0385-0684
ISSN	0385-0684
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Zs.B 2573: Show issues

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Article: 15-Deoxy-Δ¹²,¹⁴-prostaglandin J₂ as an electrophilic mediator

Shibata, Takahiro

Bioscience, biotechnology, and biochemistry. 2015 July 3, v. 79, no. 7

2015

Abstract: Lipid-derived electrophilic molecules are endogenously generated and are causally involved in many pathophysiological effects. Prostaglandin D₂, a major cyclooxygenase product in a variety of tissues and cells, readily undergoes dehydration to yield the ... ...

Abstract	Lipid-derived electrophilic molecules are endogenously generated and are causally involved in many pathophysiological effects. Prostaglandin D₂, a major cyclooxygenase product in a variety of tissues and cells, readily undergoes dehydration to yield the J-series PGs such as 15-deoxy-Δ¹²,¹⁴-PGJ₂ (15d-PGJ₂). Because of the electrophilic α,β-unsaturated ketone moiety present in its cyclopentenone ring, 15d-PGJ₂ acts as an endogenous electrophile. 15d-PGJ₂ can covalently react via the Michael addition reaction with critical cellular nucleophiles, such as the free cysteine residues of proteins that play a key role in the regulation of the intracellular signaling pathways. Covalent modification of cellular proteins by 15d-PGJ₂ may be one of the most important mechanisms by which 15d-PGJ₂ induces many biological responses involved in the pathophysiological effects associated with inflammation. This current review is intended to provide a comprehensive summary of 15d-PGJ₂ as an endogenous electrophilic mediator of biological activities.
Keywords	Lewis acids ; Lewis bases ; biotechnology ; chemical bonding ; chemical reactions ; cysteine ; inflammation ; moieties ; prostaglandin synthase ; prostaglandins
Language	English
Dates of publication	2015-0703
Size	p. 1044-1049.
Publishing place	Taylor & Francis
Document type	Article
Note	NAL-light
ZDB-ID	1106450-x
ISSN	1347-6947 ; 0916-8451
ISSN (online)	1347-6947
ISSN	0916-8451
DOI	10.1080/09168451.2015.1012149
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Quantitative analysis of oxidized vitamin B1 metabolites generated by hypochlorous acid.

Sasatsuki, Hitoshi / Nakazaki, Atsuo / Uchida, Koji / Shibata, Takahiro

Free radical biology & medicine

2020 Volume 152, Page(s) 197–206

Abstract: Thiamine, a water-soluble essential vitamin known as vitamin B1, acts as an important cofactor in various cellular processes, such as metabolism and energy production. Thiamine is also thought to have antioxidant effects as a singlet oxygen scavenger and ...

Abstract	Thiamine, a water-soluble essential vitamin known as vitamin B1, acts as an important cofactor in various cellular processes, such as metabolism and energy production. Thiamine is also thought to have antioxidant effects as a singlet oxygen scavenger and a lipid peroxidation inhibitor. However, the oxidation mechanism and oxidized metabolites of thiamine are not completely established. In the present study, we investigated the oxidative reactivity of thiamine and found that three products were formed upon the reaction of thiamine with hypochlorous acid (HOCl). Based on the NMR and high resolution mass spectrometric analysis, the HOCl-oxidized metabolites of thiamine were identified as formylaminopyrimidine (FAP), thiamine sulfonic acid (TSA), and thiamine sulfinic ester (TSE). To evaluate the formation of these oxidized metabolites in vivo, we established a specific method for quantification of the oxidized thiamine metabolites using liquid chromatography-tandem mass spectrometry coupled with a stable isotope dilution method. Using this method, it was shown that the oxidized thiamine metabolites were generated in the culture media of phorbol-12-myristate-acetate-treated neutrophil-like cells in a myeloperoxidase-dependent manner. Moreover, significantly higher amounts of FAP and TSE were detected in the lung tissues of the lipopolysaccharide-treated mice compared to the controls. These findings provide not only insights into the oxidative metabolism of thiamine, but also the possibility that the oxidized thiamine metabolites may be potential biomarkers for HOCl-related oxidative stress.
MeSH term(s)	Animals ; Chromatography, Liquid ; Hypochlorous Acid ; Mice ; Oxidation-Reduction ; Peroxidase/metabolism ; Thiamine
Chemical Substances	Hypochlorous Acid (712K4CDC10) ; Peroxidase (EC 1.11.1.7) ; Thiamine (X66NSO3N35)
Language	English
Publishing date	2020-03-19
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	807032-5
ISSN	1873-4596 ; 0891-5849
ISSN (online)	1873-4596
ISSN	0891-5849
DOI	10.1016/j.freeradbiomed.2020.03.010
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Zs.A 2109: Show issues

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Article ; Online: 6-Paradol Acts as a Potential Anti-obesity Vanilloid from Grains of Paradise.

Hattori, Hiroyuki / Mori, Takashi / Shibata, Takahiro / Kita, Masaki / Mitsunaga, Tohru

Molecular nutrition & food research

2021 Volume 65, Issue 16, Page(s) e2100185

Abstract: Scope: Grains of Paradise (GOP), the seeds of Aframomum melegueta, has anti-obesity effects. However, the mechanisms underlying the effects remain unclear.: Methods and results: This study sets up to study the anti-obesity impact and homeostatic ... ...

Abstract	Scope: Grains of Paradise (GOP), the seeds of Aframomum melegueta, has anti-obesity effects. However, the mechanisms underlying the effects remain unclear. Methods and results: This study sets up to study the anti-obesity impact and homeostatic effects of 6-paradol, a major vanilloid found in GOP, and investigates the physiological outputs and the lipometabolism-related gene in fat and liver in high-fat-induced obese mice with a comparison with structurally similar vanilloids (6-gingerol and 6-shogaol). The vanilloids are synthesized in adequate quantities for performing animal experiments and orally administered to 6-week-old male mice over 2 weeks. This study found that 6-paradol decreased body weight gain and visceral and subcutaneous fats in 2 weeks, whereas 6-gingerol and 6-shogaol have no effect. Additionally, 6-paradol suppresses the hepatic cholesterol and triglyceride and significantly decreases the gene expression related to fatty acid synthesis, lipid transportation, and adipocyte differentiation in both liver and adipose tissue. Moreover, phosphorylation of AMP-activated protein kinase (AMPK) that greatly contributes to lipometabolism is promoted by 6-gingerol but not 6-paradol. Conclusion: These results suggest that 6-paradol regulates several obesity-related genes in an AMPK-independent manner. Therefore, it could be the principal active vanilloid in GOP giving it anti-obesity properties with a different mechanism.
MeSH term(s)	AMP-Activated Protein Kinases/metabolism ; Adipose Tissue ; Animals ; Anti-Obesity Agents/pharmacology ; Guaiacol/analogs & derivatives ; Guaiacol/pharmacology ; Ketones/pharmacology ; Liver/drug effects ; Liver/metabolism ; Male ; Mice ; Molecular Structure ; Obesity/drug therapy ; Obesity/genetics ; Plant Extracts/pharmacology ; Seeds/chemistry ; Weight Gain ; Zingiberaceae/chemistry
Chemical Substances	Anti-Obesity Agents ; Ketones ; Plant Extracts ; Guaiacol (6JKA7MAH9C) ; 6-paradol (BO24ID7E9U) ; AMP-Activated Protein Kinases (EC 2.7.11.31)
Language	English
Publishing date	2021-06-30
Publishing country	Germany
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2160372-8
ISSN	1613-4133 ; 1613-4125
ISSN (online)	1613-4133
ISSN	1613-4125
DOI	10.1002/mnfr.202100185
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Article ; Online: Molecular networking-based lipid profiling and multi-omics approaches reveal new contributions of functional vanilloids to gut microbiota and lipometabolism changes.

Hattori, Hiroyuki / Moriyama, Akihiro / Ohno, Tomoki / Shibata, Takahiro / Iwahashi, Hitoshi / Mitsunaga, Tohru

Food chemistry. Molecular sciences

2022 Volume 5, Page(s) 100123

Abstract: Obesity is now recognized as an epidemic, requiring rapid intervention. We previously demonstrated that vanilloids from the African spice known as Grains of Paradise (GOP) exhibit strong anti-obesity effects. Here, the molecular mechanism behind the ... ...

Abstract	Obesity is now recognized as an epidemic, requiring rapid intervention. We previously demonstrated that vanilloids from the African spice known as Grains of Paradise (GOP) exhibit strong anti-obesity effects. Here, the molecular mechanism behind the obesity prevention property of the GOP extract was investigated by employing molecular networking-based lipid profiling and 16S rRNA sequencing. Administration of either GOP extract or two of its components, 6-paradol and 6-gingerol, reversed the unbalanced gut microbiota composition induced by a high-fat diet (HFD) with a decrease in Firmicutes / Bacteroidetes ratio and increase in genera
Language	English
Publishing date	2022-07-18
Publishing country	England
Document type	Journal Article
ISSN	2666-5662
ISSN (online)	2666-5662
DOI	10.1016/j.fochms.2022.100123
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Article: [A Case of Rectal Cancer with Lymph Node Metastasis Diagnosed as Intramucosal Cancer].

Katada, Takeyasu / Teranishi, Futoshi / Shibata, Takahiro / Aoyama, Yoshinaga / Harata, Shinnosuke / Shinoda, Noriyuki

Gan to kagaku ryoho. Cancer & chemotherapy

2022 Volume 48, Issue 13, Page(s) 1691–1693

Abstract: The patient was a 62-year-old man in whom 0-Ⅱa plus Ⅱc lesions in Rs were identified during follow-up observation of multiple colorectal polyps that were found during colonoscopy performed for the examination of fecal occult blood. CT showed no ... ...

Abstract	The patient was a 62-year-old man in whom 0-Ⅱa plus Ⅱc lesions in Rs were identified during follow-up observation of multiple colorectal polyps that were found during colonoscopy performed for the examination of fecal occult blood. CT showed no lymphadenopathy or distant metastasis to other organs. Laparoscopic-assisted high anterior resection of the rectum was performed with a diagnosis of clinical stage Ⅰ. Pathologically, there was a well-to-moderately differentiated tubular adenocarcinoma that remained in the lamina propria; however, 1 metastasis was found in the lymph node adjacent to the rectum(#251). Therefore, adjuvant chemotherapy was performed for 6 months after the operation, and 5 years have passed with no recurrence. Here, we report a case with no apparent submucosal invasion but with lymph node metastasis. We confirm recurrence-free survival for 5 years after surgery.
MeSH term(s)	Adenocarcinoma/drug therapy ; Adenocarcinoma/surgery ; Humans ; Lymph Nodes ; Lymphatic Metastasis ; Male ; Middle Aged ; Rectal Neoplasms/drug therapy ; Rectal Neoplasms/surgery ; Rectum
Language	Japanese
Publishing date	2022-01-19
Publishing country	Japan
Document type	Case Reports ; Journal Article
ZDB-ID	604842-0
ISSN	0385-0684
ISSN	0385-0684
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