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  1. Article ; Online: Mass spectrometry imaging of diclofenac and its metabolites in tissues using nanospray desorption electrospray ionization.

    Mesa Sanchez, Daniela / Brown, Hilary M / Yin, Ruichuan / Chen, Bingming / Vavrek, Marissa / Cancilla, Mark T / Zhong, Wendy / Shyong, BaoJen / Zhang, Nanyan Rena / Li, Fangbiao / Laskin, Julia

    Analytica chimica acta

    2022  Volume 1233, Page(s) 340490

    Abstract: Glucuronidation is a common phase II metabolic process for drugs and xenobiotics which increases their solubility for excretion. Acyl glucuronides (glucuronides of carboxylic acids) present concerns as they have been implicated in gastrointestinal ... ...

    Abstract Glucuronidation is a common phase II metabolic process for drugs and xenobiotics which increases their solubility for excretion. Acyl glucuronides (glucuronides of carboxylic acids) present concerns as they have been implicated in gastrointestinal toxicity and hepatic failure. Despite the substantial success in the bulk analysis of these species, previous attempts using traditional mass spectrometry imaging (MSI) techniques have completely or partially failed and therefore little is known about their localization in tissues. Herein, we use nanospray desorption electrospray ionization mass spectrometry imaging (nano-DESI MSI), an ambient liquid extraction-based ionization technique, as a viable alternative to other MSI techniques to examine the localization of diclofenac, a widely used nonsteroidal anti-inflammatory drug, and its metabolites in mouse kidney and liver tissues. MSI data acquired over a broad m/z range showed low signals of the drug and its metabolites resulting from the low ionization efficiency and substantial signal suppression on the tissue. Significant improvements in the signal-to-noise were obtained using selected ion monitoring (SIM) with m/z windows centered around the low-abundance ions of interest. Using nano-DESI MSI in SIM mode, we observed that diclofenac acyl glucuronide and hydroxydiclofenac are localized to the inner medulla and cortex of the kidney, respectively, which is consistent with the previously reported localization of enzymes that process diclofenac into its respective metabolites. In contrast, a uniform distribution of diclofenac and its metabolites was observed in the liver tissue. Concentration ratios of diclofenac and hydroxydiclofenac calculated from nano-DESI MSI data are generally in agreement to those obtained using liquid chromatography tandem mass spectrometry (LC-MS/MS) analysis. Collectively, our results demonstrate that nano-DESI MSI can be successfully used to image diclofenac and its primary metabolites and derive relative quantitative data from different tissue regions. Our approach will enable a better understanding of metabolic processes associated with diclofenac and other drugs that are difficult to analyze using commercially available MSI platforms.
    MeSH term(s) Animals ; Mice ; Spectrometry, Mass, Electrospray Ionization/methods ; Chromatography, Liquid ; Diclofenac ; Tandem Mass Spectrometry ; Ions ; Anti-Inflammatory Agents
    Chemical Substances Diclofenac (144O8QL0L1) ; Ions ; Anti-Inflammatory Agents
    Language English
    Publishing date 2022-10-12
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1483436-4
    ISSN 1873-4324 ; 0003-2670
    ISSN (online) 1873-4324
    ISSN 0003-2670
    DOI 10.1016/j.aca.2022.340490
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Distinct subsets of neutrophils crosstalk with cytokines and metabolites in patients with sepsis.

    Parthasarathy, Upasana / Kuang, Yi / Thakur, Gunjan / Hogan, John D / Wyche, Thomas P / Norton, James E / Killough, Jason R / Sana, Theodore R / Beakes, Caroline / Shyong, BaoJen / Zhang, Rena N / Gutierrez, Dario A / Filbin, Michael / Christiani, David C / Therien, Alex G / Woelk, Christopher H / White, Cory H / Martinelli, Roberta

    iScience

    2023  Volume 26, Issue 2, Page(s) 105948

    Abstract: Sepsis is a life-threatening condition caused by a dysregulated host response to infection. Despite continued efforts to understand the pathophysiology of sepsis, no effective therapies are currently available. While singular components of the aberrant ... ...

    Abstract Sepsis is a life-threatening condition caused by a dysregulated host response to infection. Despite continued efforts to understand the pathophysiology of sepsis, no effective therapies are currently available. While singular components of the aberrant immune response have been investigated, comprehensive studies linking different data layers are lacking. Using an integrated systems immunology approach, we evaluated neutrophil phenotypes and concomitant changes in cytokines and metabolites in patients with sepsis. Our findings identify differentially expressed mature and immature neutrophil subsets in patients with sepsis. These subsets correlate with various proteins, metabolites, and lipids, including pentraxin-3, angiopoietin-2, and lysophosphatidylcholines, in patients with sepsis. These results enabled the construction of a statistical model based on weighted multi-omics linear regression analysis for sepsis biomarker identification. These findings could help inform early patient stratification and treatment options, and facilitate further mechanistic studies targeting the trifecta of surface marker expression, cytokines, and metabolites.
    Language English
    Publishing date 2023-01-07
    Publishing country United States
    Document type Journal Article
    ISSN 2589-0042
    ISSN (online) 2589-0042
    DOI 10.1016/j.isci.2023.105948
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Automated DBS microsampling, microscale automation and microflow LC-MS for therapeutic protein PK.

    Zhang, Qian / Tomazela, Daniela / Vasicek, Lisa A / Spellman, Daniel S / Beaumont, Maribel / Shyong, BaoJen / Kenny, Jacqueline / Fauty, Scott / Fillgrove, Kerry / Harrelson, Jane / Bateman, Kevin P

    Bioanalysis

    2016  Volume 8, Issue 7, Page(s) 649–659

    Abstract: Aim: Reduce animal usage for discovery-stage PK studies for biologics programs using microsampling-based approaches and microscale LC-MS.: Methods & results: We report the development of an automated DBS-based serial microsampling approach for ... ...

    Abstract Aim: Reduce animal usage for discovery-stage PK studies for biologics programs using microsampling-based approaches and microscale LC-MS.
    Methods & results: We report the development of an automated DBS-based serial microsampling approach for studying the PK of therapeutic proteins in mice. Automated sample preparation and microflow LC-MS were used to enable assay miniaturization and improve overall assay throughput. Serial sampling of mice was possible over the full 21-day study period with the first six time points over 24 h being collected using automated DBS sample collection. Overall, this approach demonstrated comparable data to a previous study using single mice per time point liquid samples while reducing animal and compound requirements by 14-fold.
    Conclusion: Reduction in animals and drug material is enabled by the use of automated serial DBS microsampling for mice studies in discovery-stage studies of protein therapeutics.
    MeSH term(s) Amino Acid Sequence ; Animals ; Antibodies, Monoclonal/analysis ; Antibodies, Monoclonal/pharmacokinetics ; Automation ; Blood Specimen Collection ; Chromatography, High Pressure Liquid ; Dried Blood Spot Testing ; Half-Life ; Male ; Mice ; Mice, Inbred C57BL ; Miniaturization ; Molecular Sequence Data ; Proteins/analysis ; Proteins/pharmacokinetics ; Tandem Mass Spectrometry
    Chemical Substances Antibodies, Monoclonal ; Proteins
    Language English
    Publishing date 2016-04
    Publishing country England
    Document type Journal Article
    ISSN 1757-6199
    ISSN (online) 1757-6199
    DOI 10.4155/bio-2015-0006
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Non-enzymatic hinge region fragmentation of antibodies in solution.

    Cordoba, Armando J / Shyong, Bao-Jen / Breen, Deirdre / Harris, Reed J

    Journal of chromatography. B, Analytical technologies in the biomedical and life sciences

    2005  Volume 818, Issue 2, Page(s) 115–121

    Abstract: Liquid formulations of monoclonal antibodies (MAbs) typically undergo fragmentation near the papain cleavage site in the hinge region, resulting in Fab and Fab+Fc forms. The purpose of this study was to investigate whether this fragmentation is due to ... ...

    Abstract Liquid formulations of monoclonal antibodies (MAbs) typically undergo fragmentation near the papain cleavage site in the hinge region, resulting in Fab and Fab+Fc forms. The purpose of this study was to investigate whether this fragmentation is due to proteases. Four closely-related MAbs were exchanged into a pH 5.2 acetate buffer with NaCl and stored at -20 degrees C, 5 degrees C, 30 degrees C, or 40 degrees C for 1 month. Fragmentation generated size-exclusion chromatography (SEC) peak fractions that were analyzed by electrospray mass spectrometry to identify the cleavage sites. The effects of protein inhibitors or host cell proteins on fragmentation were also studied. The extent of fragmentation was equivalent for all four antibodies, occurring in the heavy chain hinge region Ser-Cys-Asp-Lys-Thr-His-Thr sequence. The fragment due to cleavage of the Asp-Lys bond showed two forms that differ by 18 Da. A synthetic peptide with the hinge region sequence terminating with Asp did not show fragmentation or the loss of 18 Da after incubation. Protease inhibitors did not affect rates of cleavage or modify sites of fragmentation. Degradation was not affected by host cell protein content. Fragmentation appears to be a kinetic process that is not caused by low levels of host cell proteases.
    MeSH term(s) Amino Acid Sequence ; Antibodies, Monoclonal/chemistry ; Chromatography, Gel ; Drug Stability ; Humans ; Immunoglobulin Fab Fragments/chemistry ; Immunoglobulin Fc Fragments/chemistry ; Immunoglobulin Fragments/chemistry ; Immunoglobulin Fragments/isolation & purification ; Kinetics ; Protease Inhibitors/pharmacology ; Temperature
    Chemical Substances Antibodies, Monoclonal ; Immunoglobulin Fab Fragments ; Immunoglobulin Fc Fragments ; Immunoglobulin Fragments ; Protease Inhibitors
    Language English
    Publishing date 2005-04-25
    Publishing country Netherlands
    Document type Journal Article
    ISSN 1570-0232
    ISSN 1570-0232
    DOI 10.1016/j.jchromb.2004.12.033
    Database MEDical Literature Analysis and Retrieval System OnLINE

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