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  1. Article ; Online: Spatiotemporal dynamics reveals forest rejuvenation, fragmentation, and edge effects in an Atlantic Forest hotspot, the Pernambuco Endemism Center, northeastern Brazil.

    Dias, Thiago da Costa / Silveira, Luís Fábio / Francisco, Mercival Roberto

    PloS one

    2023  Volume 18, Issue 9, Page(s) e0291234

    Abstract: Large forested tracts are increasingly rare in the tropics, where conservation managers are often presented with the challenge of preserving biodiversity in small and isolated fragments. The Atlantic Forest is one of the world's most important ... ...

    Abstract Large forested tracts are increasingly rare in the tropics, where conservation managers are often presented with the challenge of preserving biodiversity in small and isolated fragments. The Atlantic Forest is one of the world's most important biodiversity hotspots, jeopardized by habitat loss and fragmentation. The Pernambuco Endemism Center (PEC) is the most degraded of the Atlantic Forest regions and because of the dramatic levels of deforestation, fragmentation, and ongoing species losses, studies on the distribution and configuration of the PEC's forest cover are necessary. However, across dynamic tropical landscapes, investigating changes over time is essential because it may reveal trends in forest quality attributes. Here, we used Google Earth Engine to assess land use and land cover data from MapBiomas ranging from 1985 to 2020 to calculate current landscape metrics and to reveal for the first time the spatiotemporal dynamics of the PEC's forests. We identified a forest cover area that ranged from 571,661 ha in 1985 to 539,877 ha in 2020, and about 90% of the fragments were smaller than 10 ha. The average fragment size was about 11 ha, and only four fragments had more than 5,000 ha. Deforestation was mostly concentrated in northern Alagoas, southern Pernambuco, and non-coastal Paraíba and Rio Grande do Norte. On average, borders represented 53.6% of the forests from 1985 to 2020, and younger forests covered 52.3% of the area in 2017, revealing a vegetation rejuvenation process 2.5 times higher than in total Atlantic Forest. In 2017, older forest cores in fragments larger than 1000 ha (i.e., higher-quality habitats) represented only 12% of the remaining forests. We recommend that the amount of forest cover alone may poorly assist conservation managers, and our results indicate that ensuring legal protection and increasing surveillance of the PEC's few last higher-quality habitats is urgently needed.
    MeSH term(s) Brazil ; Rejuvenation ; Forests ; Benchmarking ; Biodiversity
    Language English
    Publishing date 2023-09-08
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0291234
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: On the validity and taxonomic status of emCrypturellus/em emobsoletus/em emgriseiventris/em (Salvadori, 1895) and emC. o. hypochraceus/em (Miranda-Ribeiro, 1938) (Aves, Tinamidae).

    Gomes, Vitor / Silveira, Luís Fábio

    Zootaxa

    2021  Volume 4951, Issue 2, Page(s) zootaxa.4951.2.6

    Abstract: The nine currently recognized subspecies in the Brown Tinamou (Crypturellus obsoletus) complex are disjunctly widespread in South America, and at least three of them occur in Brazil. Morphological diagnosis of most of these taxa is imprecise, in contrast ...

    Abstract The nine currently recognized subspecies in the Brown Tinamou (Crypturellus obsoletus) complex are disjunctly widespread in South America, and at least three of them occur in Brazil. Morphological diagnosis of most of these taxa is imprecise, in contrast with consistent vocal differences described in the literature. We conducted a taxonomic review of two Amazonian taxa, C. o. griseiventris and C. o. hypochraceus, using morphological, morphometric, and vocal characters. Our results indicate that C. o. hypochraceus (Miranda-Ribeiro, 1938) is a junior synonym of C. o. griseiventris (Salvadori, 1895), and that Crypturellus griseiventris (Salvadori, 1895) must be treated as a full species, based on unique and fully diagnosable plumage and vocal patterns.
    MeSH term(s) Animals ; Birds ; Classification ; Palaeognathae/classification ; Phylogeny
    Language English
    Publishing date 2021-04-06
    Publishing country New Zealand
    Document type Journal Article
    ISSN 1175-5334
    ISSN (online) 1175-5334
    DOI 10.11646/zootaxa.4951.2.6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Hybridism between Cyanocorax chrysops and Cyanocorax cyanopogon (Aves: Corvidae) in Brazil

    Apolinario / Silveira, Luís Fábio

    Zoologia. 2019 Aug. 30, v. 36

    2019  

    Abstract: Cyanocorax chrysops (Vieillot, 1818) and Cyanocorax cyanopogon (Wied, 1821) are widespread jays. They are considered sister species according to recent molecular phylogenies. When analyzing museum specimens of both species, we found two individuals with ... ...

    Abstract Cyanocorax chrysops (Vieillot, 1818) and Cyanocorax cyanopogon (Wied, 1821) are widespread jays. They are considered sister species according to recent molecular phylogenies. When analyzing museum specimens of both species, we found two individuals with intermediate plumage characteristics. They were collected near the range limits of both species, and we classified them as hybrids. Based on the sites where these specimens were found, we discuss the possible factors leading the interbreeding and compare our findings with information available in the literature. This is the first documented case of natural hybridization in jays in Brazil and the second case involving sister species within the New World jays.
    Keywords Corvidae ; hybridization ; hybrids ; information ; literature ; museums ; phylogeny ; plumage ; Brazil
    Language English
    Dates of publication 2019-0830
    Size p. 1-7.
    Publishing place Pensoft Publishers
    Document type Article
    Note NAL-light
    ZDB-ID 2505776-5
    ISSN 1984-4689 ; 1984-4670
    ISSN (online) 1984-4689
    ISSN 1984-4670
    DOI 10.3897/zoologia.36.e32138
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: Systematics of Thraupis (Aves, Passeriformes) reveals an extensive hybrid zone between T. episcopus (Blue-gray Tanager) and T. sayaca (Sayaca Tanager).

    Cueva, Diego / Bravo, Gustavo A / Silveira, Luís Fábio

    PloS one

    2022  Volume 17, Issue 10, Page(s) e0270892

    Abstract: The Neotropical avian genus Thraupis (Passeriformes, Thraupidae) currently comprises seven species that are widespread and abundant throughout their ranges. However, no phylogenetic hypothesis with comprehensive intraspecific sampling is available for ... ...

    Abstract The Neotropical avian genus Thraupis (Passeriformes, Thraupidae) currently comprises seven species that are widespread and abundant throughout their ranges. However, no phylogenetic hypothesis with comprehensive intraspecific sampling is available for the group and, therefore, currently accepted species limits remain untested. We obtained sequence data for two mitochondrial (ND2, cyt-b) and three non-coding nuclear (TGFB2, MUSK, and βF5) markers from 118 vouchered museum specimens. We conducted population structure and coalescent-based species-tree analyses using a molecular clock calibration. We integrated these results with morphometric and coloration analyses of 1,003 museum specimens to assess species limits within Thraupis. Our results confirm that Thraupis is a monophyletic group and support its origin in the late Miocene and subsequent diversification during the Pleistocene. However, we found conflicts with previous phylogenies. We recovered Thraupis glaucocolpa to be sister to all other species in the genus, and T. cyanoptera to the remaining five species. Our phylogenetic trees and population structure analyses uncovered phylogeographic structure within Thraupis episcopus that is congruent with geographic patterns of phenotypic variation and distributions of some named taxa. The first genetic and phenotypic cluster in T. episcopus occurs east of the Andes and is diagnosed by the white patch on the lesser and median wing coverts, whereas the second group has a blue patch on the wing and distributes to the west of Colombia's eastern Andes. Finally, we present evidence of hybridization and ongoing gene flow between several taxa at different taxonomic levels and discuss its taxonomic implications.
    MeSH term(s) Animals ; DNA, Mitochondrial/genetics ; Genetic Variation ; Hybridization, Genetic ; Passeriformes/genetics ; Phylogeny ; Phylogeography
    Chemical Substances DNA, Mitochondrial
    Language English
    Publishing date 2022-10-05
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0270892
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: The Fossil Birds of Peter Lund.

    Nascimento, Rafael / Silveira, Luís Fábio

    Zootaxa

    2020  Volume 4743, Issue 4, Page(s) zootaxa.4743.4.2

    Abstract: The Danish naturalist Peter Wilhelm Lund (1801-1880), regarded as the father of Brazilian palaeontology and archaeology, is known mainly for his work with fossil mammals of Quaternary age from the limestone caves of the Lagoa Santa region in the state of ...

    Abstract The Danish naturalist Peter Wilhelm Lund (1801-1880), regarded as the father of Brazilian palaeontology and archaeology, is known mainly for his work with fossil mammals of Quaternary age from the limestone caves of the Lagoa Santa region in the state of Minas Gerais, southeastern Brazil. However, during one decade of fieldwork (1835-1844), he also collected a large number of remains of other animal groups from these caves. Birds were well represented and, following assessment by the Danish ornithologist Oluf Winge (1855-1889), most of the specimens collected by Lund belong to species still living in the area. Here we present an overview of the bird remains (fossil and recent), found by Lund and others in the region, we update their taxonomic attributions, and comment on the history of the material, making information previously published only in Danish available in English.
    MeSH term(s) Animals ; Birds ; Caves ; Fossils ; Male ; Mammals
    Language English
    Publishing date 2020-02-27
    Publishing country New Zealand
    Document type Journal Article
    ISSN 1175-5334
    ISSN (online) 1175-5334
    DOI 10.11646/zootaxa.4743.4.2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Genetic Variability and Kinship Analyses of Seized Red-Browed Amazon, Amazona rhodocorytha (Aves, Psittacidae)

    Agazzi Migotto, Anna / Bocalini, Fernanda / Roberto Francisco, Mercival / Reillo, Paul / Silveira, Luís Fábio

    Diversity. 2023 Aug. 11, v. 15, no. 8

    2023  

    Abstract: Analyzing genetic variability and kinship relations is essential to guide conservation management plans for threatened species. The Red-browed Amazon (Amazona rhodocorytha) is one of the four Amazona parrots that are endemic to remnants of the Atlantic ... ...

    Abstract Analyzing genetic variability and kinship relations is essential to guide conservation management plans for threatened species. The Red-browed Amazon (Amazona rhodocorytha) is one of the four Amazona parrots that are endemic to remnants of the Atlantic Forest, classified as Vulnerable (IUCN) owing to habitat loss and fragmentation and trapping for the illegal pet trade. At the end of 2021, 19 Red-browed Amazons were rescued from illegal trade in the Espírito Santo state, Brazil, including 14 nestlings reportedly captured in the Sooretama Biological Reserve, which provided the first opportunity to address the genetic parameters of a wild population of this threatened parrot. We used Single-Nucleotide Polymorphism (SNP) data to assess the genetic diversity and kinship relations between the rescued birds. We observed high heterozygosity levels and low inbreeding coefficients. Principal Component Analysis revealed the presence of at least two distinct genetic groups, suggesting past isolation followed by secondary contact. Our results suggest that the population from Sooretama is an important genetic and demographic repository of the Red-browed Amazon, and the presence of individuals from the two genetic lineages in the same area reduces concerns about potential inbreeding depression in rehabilitation and reintroduction plans and also inspires further investigations on historical and contemporary population structuring.
    Keywords Amazona rhodocorytha ; forests ; genetic variation ; habitat destruction ; heterozygosity ; kinship ; parrots ; principal component analysis ; secondary contact ; single nucleotide polymorphism ; threatened species ; trade ; Brazil
    Language English
    Dates of publication 2023-0811
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article ; Online
    ZDB-ID 2518137-3
    ISSN 1424-2818
    ISSN 1424-2818
    DOI 10.3390/d15080923
    Database NAL-Catalogue (AGRICOLA)

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  7. Article: 118 years of ornithological knowledge of a forgotten region of the Atlantic Forest near the largest city in South America

    Schunck, Fabio / Silveira, Luís Fábio / Nascimento, Valder Soares

    Wilson journal of ornithology. 2020 Jan. 20, v. 131, no. 4

    2020  

    Abstract: The Atlantic Forest in eastern South America harbors 849 bird species, of which 216 are endemic and 122 threatened with extinction. It is also one of the 25 biodiversity hotspots recognized throughout the world. Within this biome, the Serra do Mar stands ...

    Title translation 118 anos de conhecimento ornitológico de uma região esquecida da Mata Atlântica localizada ao lado da maior área urbana da América do Sul
    Abstract The Atlantic Forest in eastern South America harbors 849 bird species, of which 216 are endemic and 122 threatened with extinction. It is also one of the 25 biodiversity hotspots recognized throughout the world. Within this biome, the Serra do Mar stands out as an important area of endemism in South America. Nonetheless, ornithological knowledge of the Serra do Mar remains underestimated and incomplete. One lacunae of information for the Serra is a region called Curucutu, which is adjacent to the largest urban area in South America. The avifauna of Curucutu has been sampled occasionally since 1900, but all of the available data have yet to be published. Therefore, we compiled ornithological data published on Serra do Mar over the last 118 years and undertook a 16-year-long field inventory using 3 methods of data collection simultaneously (visual observations, point counts, and mist nets) for a total of 395 field days. Sampling was performed in forest and natural grasslands along an elevational gradient from 5 to 850 m.a.s.l. A total of 422 species of birds, 128 of which are endemic to the Atlantic Forest and 29 that are threatened with extinction, were documented, thereby illustrating the importance of this region. Of this total, 382 species occur in Núcleo Curucutu do Parque Estadual da Serra do Mar, demonstrating the importance of this reserve to the regional avifauna. We made several significant additions to the avifauna of the region, with only one species, the Black-necked Aracari (Pteroglossus aracari), being considered regionally extinct because of a lack of records since 1900—thus representing a kind of poorly studied extinction that has yet to be investigated and may be happening with much greater frequency in large forested areas of Serra do Mar. Even though the region is partially protected, being a state reserve, its proximity to the largest urban area in South America automatically puts the area under threat, especially considering the disorganized urban growth that has been encroaching upon natural areas of the region. The expansion of current reserves, and the establishment of new protected areas in this region of Serra do Mar is essential for guaranteeing the integrity of this very rich and threatened bird community of the Atlantic Forest.
    Keywords Pteroglossus aracari ; avifauna ; biodiversity ; birds ; conservation areas ; data collection ; ecosystems ; extinction ; forests ; grasslands ; indigenous species ; inventories ; nets (equipment) ; threatened species ; urban areas ; urbanization ; Brazil
    Language English
    Dates of publication 2020-0120
    Size p. 758-773.
    Publishing place Wilson Ornithological Society
    Document type Article
    ZDB-ID 2256217-5
    ISSN 1938-5447 ; 1559-4491
    ISSN (online) 1938-5447
    ISSN 1559-4491
    DOI 10.1676/1559-4491-131.4.758
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  8. Article: Phylogenetic analysis of the nocturnal avian family Nyctibiidae (Caprimulgiformes) inferred from osteological characters

    Costa, Thiago V.V / Silveira, Luís Fábio / Posso, Sérgio R / Donatelli, Reginaldo J

    Elsevier GmbH Zoologischer Anzeiger. 2021 Mar., v. 291

    2021  

    Abstract: The family Nyctibiidae (potoos) comprises seven extant species currently included in the genera Nyctibius and Phyllaemulor, endemic to the Neotropical region, and the extinct genus Paraprefica from the Eocene of Europe. The living species are secretive ... ...

    Abstract The family Nyctibiidae (potoos) comprises seven extant species currently included in the genera Nyctibius and Phyllaemulor, endemic to the Neotropical region, and the extinct genus Paraprefica from the Eocene of Europe. The living species are secretive nocturnal birds, characterized by spend most of the daylight time in a freezing, upright posture, resembling the top of a stump or a dead leaf. Here we present the first phylogenetic analysis of the family based on morphological characters, inferred from 37 cranial and post-cranial characters of all but one representatives of Nyctibiidae, including the extinct genus Paraprefica. TNT analysis resulted in a single most parsimonious tree with a length of 47 steps, and the ingroup topology was (Paraprefica (Phyllaemulor bracteatus (Nyctibius leucopterus (Nyctibius griseus, Nyctibius jamaicensis (Nyctibius aethereus, Nyctibius grandis))))). These results partially corroborate previous phylogenetic hypotheses based on molecular data, mainly concerning the position of P. bracteatus, but the relationships among Nyctibius species remain controversial. The osteology of this family is remarkably distinct from close related groups, especially regarding the cranial and mandibular structures, mainly due to their noteworthy habits and large eyes and mouth. The distinction between Paraprefica and Phyllaemulor + Nyctibius, allied to the geographical and temporal disjunction of these two groups, seems to be enough for their separation at the subfamily level. A notable osteological variation exists also among the Nyctibius species, albeit included in a single genus, following the high levels of genetic divergence presented in the literature, suggesting that the currently accepted systematics of the family must be reviewed.
    Keywords Caprimulgiformes ; Eocene epoch ; Neotropics ; birds ; genetic variation ; leaves ; mouth ; phylogeny ; posture ; solar radiation ; topology ; Europe
    Language English
    Dates of publication 2021-03
    Size p. 113-122.
    Publishing place Elsevier GmbH
    Document type Article
    Note NAL-light
    ZDB-ID 398-0
    ISSN 1873-2674 ; 0044-5231
    ISSN (online) 1873-2674
    ISSN 0044-5231
    DOI 10.1016/j.jcz.2021.01.003
    Database NAL-Catalogue (AGRICOLA)

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  9. Article ; Online: A taxonomic revision of the Musician Wren, <i>Cyphorhinus</i> <i>arada</i> (Aves, Troglodytidae), reveals the existence of six valid species endemic to the Amazon basin.

    Bocalini, Fernanda / Silveira, Luís Fábio

    Zootaxa

    2016  Volume 4193, Issue 3, Page(s) zootaxa.4193.3.5

    Abstract: Cyphorhinus arada, an Amazonian endemic, shows considerable geographic variation in plumage that has led to the recognition of eight subspecies. These include C. a. arada, C. a. salvini, C. a. modulator, C. a. transfluvialis, C. a. interpositus, C. a. ... ...

    Abstract Cyphorhinus arada, an Amazonian endemic, shows considerable geographic variation in plumage that has led to the recognition of eight subspecies. These include C. a. arada, C. a. salvini, C. a. modulator, C. a. transfluvialis, C. a. interpositus, C. a. griseolateralis, C. a. urbanoi and C. a. faroensis. However, a thorough taxonomic revision of the Cyphorhinus arada complex has never been undertaken, so we revise the taxonomy based on morphological and vocal characters. We analyzed a total of 515 museum specimens and 146 voice recordings representing and encompassing the distributions of all named taxa, including those currently considered not valid. Vocal analyses showed major variation within the complex, from which several trends could be identified between populations. We concluded that six species (C. arada, C. transfluvialis, C. modulator, C. salvini, C. interpositus and C. griseolateralis) should be recognized under the Phylogenetic Species Concept based on the diagnosis of stable plumage and vocal patterns of each.
    MeSH term(s) Animal Distribution ; Animal Structures/anatomy & histology ; Animal Structures/growth & development ; Animals ; Body Size ; Ecosystem ; Female ; Male ; Organ Size ; Phylogeny ; Songbirds/anatomy & histology ; Songbirds/classification ; Songbirds/genetics ; Songbirds/growth & development
    Language English
    Publishing date 2016-11-17
    Publishing country New Zealand
    Document type Journal Article
    ISSN 1175-5334
    ISSN (online) 1175-5334
    DOI 10.11646/zootaxa.4193.3.5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Are publications on zoological taxonomy under attack?

    Pinto, Ângelo Parise / Mejdalani, Gabriel / Mounce, Ross / Silveira, Luís Fábio / Marinoni, Luciane / Rafael, José Albertino

    Royal Society open science

    2021  Volume 8, Issue 2, Page(s) 201617

    Abstract: Taxonomy is essential to biological sciences and the priority field in face of the biodiversity crisis. The industry of scientific publications has made extensive promotion and display of bibliometric indexes, resulting in side effects such as the ... ...

    Abstract Taxonomy is essential to biological sciences and the priority field in face of the biodiversity crisis. The industry of scientific publications has made extensive promotion and display of bibliometric indexes, resulting in side effects such as the Journal Impact Factor™ (JIF) mania. Inadequacies of the widely used indexes to assess taxonomic publications are among the impediments for the progress of this field. Based on an unusually high proportion of self-citations, the mega-journal
    Language English
    Publishing date 2021-02-10
    Publishing country England
    Document type Journal Article
    ZDB-ID 2787755-3
    ISSN 2054-5703
    ISSN 2054-5703
    DOI 10.1098/rsos.201617
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