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  1. Article ; Online: Multi-organ segmentation of organ-at-risk (OAR's) of head and neck site using ensemble learning technique.

    Singh, S / Singh, B K / Kumar, A

    Radiography (London, England : 1995)

    2024  Volume 30, Issue 2, Page(s) 673–680

    Abstract: Introduction: This paper presents a novel approach to automate the segmentation of Organ-at-Risk (OAR) in Head and Neck cancer patients using Deep Learning models combined with Ensemble Learning techniques. The study aims to improve the accuracy and ... ...

    Abstract Introduction: This paper presents a novel approach to automate the segmentation of Organ-at-Risk (OAR) in Head and Neck cancer patients using Deep Learning models combined with Ensemble Learning techniques. The study aims to improve the accuracy and efficiency of OAR segmentation, essential for radiotherapy treatment planning.
    Methods: The dataset comprised computed tomography (CT) scans of 182 patients in DICOM format, obtained from an institutional image bank. Experienced Radiation Oncologists manually segmented seven OARs for each scan. Two models, 3D U-Net and 3D DenseNet-FCN, were trained on reduced CT scans (192 × 192 x 128) due to memory limitations. Ensemble Learning techniques were employed to enhance accuracy and segmentation metrics. Testing was conducted on 78 patients from the institutional dataset and an open-source dataset (TCGA-HNSC and Head-Neck Cetuximab) consisting of 31 patient scans.
    Results: Using the Ensemble Learning technique, the average dice similarity coefficient for OARs ranged from 0.990 to 0.994, indicating high segmentation accuracy. The 95% Hausdorff distance (mm) ranged from 1.3 to 2.1, demonstrating precise segmentation boundaries.
    Conclusion: The proposed automated segmentation method achieved efficient and accurate OAR segmentation, surpassing human expert performance in terms of time and accuracy.
    Implications for practice: This approach has implications for improving treatment planning and patient care in radiotherapy. By reducing manual segmentation reliance, the proposed method offers significant time savings and potential improvements in treatment planning efficiency and precision for head and neck cancer patients.
    MeSH term(s) Humans ; Organs at Risk/diagnostic imaging ; Head and Neck Neoplasms/diagnostic imaging ; Head and Neck Neoplasms/radiotherapy ; Tomography, X-Ray Computed ; Radiotherapy Planning, Computer-Assisted/methods ; Machine Learning
    Language English
    Publishing date 2024-02-15
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1289102-2
    ISSN 1532-2831 ; 1078-8174
    ISSN (online) 1532-2831
    ISSN 1078-8174
    DOI 10.1016/j.radi.2024.02.001
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Partner or perish: tree microbiomes and climate change.

    Addison, S L / Rúa, M A / Smaill, S J / Singh, B K / Wakelin, S A

    Trends in plant science

    2024  

    Abstract: Understanding the complex relationships between plants, their microbiomes, and environmental changes is crucial for improving growth and survival, especially for long-lived tree species. Trees, like other plants, maintain close associations with a ... ...

    Abstract Understanding the complex relationships between plants, their microbiomes, and environmental changes is crucial for improving growth and survival, especially for long-lived tree species. Trees, like other plants, maintain close associations with a multitude of microorganisms on and within their tissues, forming a 'holobiont'. However, a comprehensive framework for detailed tree-microbiome dynamics, and the implications for climate adaptation, is currently lacking. This review identifies gaps in the existing literature, emphasizing the need for more research to explore the coevolution of the holobiont and the full extent of climate change impact on tree growth and survival. Advancing our knowledge of plant-microbial interactions presents opportunities to enhance tree adaptability and mitigate adverse impacts of climate changes on trees.
    Language English
    Publishing date 2024-04-16
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1305448-x
    ISSN 1878-4372 ; 1360-1385
    ISSN (online) 1878-4372
    ISSN 1360-1385
    DOI 10.1016/j.tplants.2024.03.008
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Systemic lupus erythematosus and infections.

    Singh, B K / Singh, S

    Reumatismo

    2020  Volume 72, Issue 3, Page(s) 154–169

    Abstract: Systemic lupus erythematosus (SLE) is an inflammatory and multi-systemic autoimmune disorder, characterized by an uncontrolled auto-reactivity of B and T lymphocytes, leading to the production of autoantibodies against self-directed antigens and tissue ... ...

    Abstract Systemic lupus erythematosus (SLE) is an inflammatory and multi-systemic autoimmune disorder, characterized by an uncontrolled auto-reactivity of B and T lymphocytes, leading to the production of autoantibodies against self-directed antigens and tissue damage. The life expectancy in patients with SLE has improved tremendously in the last two decades, but the mortality rates still remain three times greater compared to those of the general population. Despite increased awareness and improved management, infections remain a major source of morbidity, mortality, hospitalization, and death in patients with SLE. The infections in SLE patients widely range from opportunistic to common bacterial and viral infections with typical or atypical presentations. Moreover, SLE patients exhibit an increased susceptibility to hospital-acquired infections. Factors associated with increased risk of infections include high disease activity, specific immune dysregulation, drug-induced immune deficiency, and organ failure with irreversible damage. Furthermore, immunosuppressive agents may make patients more susceptible to opportunistic infections. A big challenge faced by physicians in these patients is to distinguish between infections and flares of SLE, as infections may mimic them, leading to predicament in diagnosis and appropriate management. Immunosuppression used to treat severe flares of lupus can have catastrophic complications in patients with active infections. There is an urgent need for biomarkers to make an accurate differential diagnosis in this situation. In spite of increased understanding of SLE, many questions remain unanswered. Further research is needed to determine specific immune dysregulation underlying the increased susceptibility to specific infections, predictors of infection in SLE such as genetic markers, and biomarkers that discriminate between disease activity and active infections. Also, measures must be evaluated appropriately to prevent infections, and their complications in SLE.
    MeSH term(s) Antineoplastic Agents/adverse effects ; Bacterial Infections/complications ; Bacterial Infections/microbiology ; Bacterial Infections/mortality ; Bacterial Infections/prevention & control ; Biomarkers ; Common Variable Immunodeficiency/complications ; Cross Infection/complications ; Cross Infection/mortality ; Cross Infection/prevention & control ; Diagnosis, Differential ; Genetic Predisposition to Disease ; Humans ; Immunity, Cellular ; Immunosuppressive Agents/adverse effects ; Immunosuppressive Agents/therapeutic use ; Lupus Erythematosus, Systemic/complications ; Lupus Erythematosus, Systemic/diagnosis ; Lupus Erythematosus, Systemic/drug therapy ; Lupus Erythematosus, Systemic/immunology ; Mycoses/complications ; Mycoses/microbiology ; Mycoses/mortality ; Opportunistic Infections/complications ; Opportunistic Infections/microbiology ; Opportunistic Infections/mortality ; Opportunistic Infections/virology ; Symptom Flare Up ; Vaccination ; Virus Diseases/complications ; Virus Diseases/mortality ; Virus Diseases/prevention & control ; Virus Diseases/virology
    Chemical Substances Antineoplastic Agents ; Biomarkers ; Immunosuppressive Agents
    Language English
    Publishing date 2020-11-19
    Publishing country Italy
    Document type Journal Article ; Review
    ZDB-ID 414816-2
    ISSN 2240-2683 ; 0048-7449
    ISSN (online) 2240-2683
    ISSN 0048-7449
    DOI 10.4081/reumatismo.2020.1303
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: De-novo Drug Design, Molecular Docking and In-Silico Molecular Prediction of AChEI Analogues through CADD Approaches as Anti-Alzheimer's Agents.

    Pandey, Surabhi / Singh, B K

    Current computer-aided drug design

    2019  Volume 16, Issue 1, Page(s) 54–72

    Abstract: Background: There are over 44 million persons who suffer with Alzheimer's disease (AD) worldwide, no existence of cure and only symptomatic treatments are available for it. The aim of this study is to evaluate the anti-Alzheimer potential of designed ... ...

    Abstract Background: There are over 44 million persons who suffer with Alzheimer's disease (AD) worldwide, no existence of cure and only symptomatic treatments are available for it. The aim of this study is to evaluate the anti-Alzheimer potential of designed AChEI analogues using computer simulation docking studies. AChEIs are the most potential standards for treatment of AD, because they have proven efficacy. Among all AChEIs donepezil possesses lowest adverse effects, it can treat mildmoderate- severe AD and only once-daily dosing is required. Therefore, donepezil is recognized as a significant prototype for design and development of new drug molecule.
    Methods: In this study the Inhibitory potential of the design compounds on acetylcholinesterase enzyme has been evaluated. Docking studies has been performed which further analyzed by in-silico pharmacokinetic evaluation through pharmacopredicta after that Interaction modes with enzyme active sites were determined. Docking studies revealed that there is a strong interaction between the active sites of AChE enzyme and analyzed compounds.
    Results: As a result 26 compounds have been indicates better inhibitory activity on AChE enzyme and all the screening parameters have also been satisfied by all 26 compounds. From these 26 compounds, six compounds 17, 18, 24, 30, 36 and 56 are found to be the most potent inhibitors of this series by insilico study through INVENTUS v 1.1 software, having highest bio-affinities i.e. - 8.51, - 7.67, - 8.30, - 7.59, - 8.71 and -7.62 kcal/mol respectively, while the standard or reference drug donepezil had binding affinity of - 6.32 kcal/mol.
    Conclusion: Computer aided drug design approach has been playing an important role in the design and development of novel anti- AD drugs. With the help of structure based drug design some novel analogues of donepezil have been designed and the molecular docking studies with structure based ADME properties prediction studies is performed for prediction of AChE inhibitory activity. The binding mode of proposed compounds with target protein i.e. AChE has been evaluated and the resulting data from docking studies explains that all of the newly designed analogues had significantly high affinity towards target protein compared to donepezil as a reference ligand.
    MeSH term(s) Acetylcholinesterase/drug effects ; Alzheimer Disease/drug therapy ; Alzheimer Disease/enzymology ; Binding Sites ; Cholinesterase Inhibitors/chemistry ; Cholinesterase Inhibitors/pharmacokinetics ; Cholinesterase Inhibitors/pharmacology ; Computer Simulation ; Computer-Aided Design ; Donepezil/pharmacology ; Drug Design ; Humans ; Molecular Docking Simulation
    Chemical Substances Cholinesterase Inhibitors ; Donepezil (8SSC91326P) ; Acetylcholinesterase (EC 3.1.1.7)
    Language English
    Publishing date 2019-02-25
    Publishing country United Arab Emirates
    Document type Journal Article
    ISSN 1875-6697
    ISSN (online) 1875-6697
    DOI 10.2174/1573409915666190301124210
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Relationships Between the Anthophiles Abundance and Flower Density of Guava

    Singh, A K / Singh, B K

    Indian journal of entomology. 2021 Dec. 25, v. 83, no. 4

    2021  

    Abstract: The plant-pollinator interaction is an important aspect and plant-pollinator relationships are pertinent for biodiversity conservation. This study delineates relationships between flower and flower-visiting insects (anthophiles) in guava Psidium guajava ( ...

    Abstract The plant-pollinator interaction is an important aspect and plant-pollinator relationships are pertinent for biodiversity conservation. This study delineates relationships between flower and flower-visiting insects (anthophiles) in guava Psidium guajava (L.). The anthophiles diversity index calculated by Shannon-Wiener diversity index reveals that there are 13 key anthophiles species observed during day time on the flowers in rainy season. Despite of jhoom cultivation, there exists a rich diversity of anthophiles. Of these, the honey bees are the abundant. Guava blooming commences in 16ᵗʰ standard-week (SW) and cessation is in 22ⁿᵈ SW, with peak observed in 19ᵗʰ SW. The anthophiles abundance and diversity increased with flower density, revealing a positive correlation.
    Keywords Psidium guajava ; biodiversity conservation ; entomology ; flowers ; guavas ; honey ; wet season
    Language English
    Dates of publication 2021-1225
    Size p. 592-594.
    Publishing place The Entomological Society Of India
    Document type Article
    ISSN 0974-8172
    DOI 10.5958/0974-8172.2021.00076.6
    Database NAL-Catalogue (AGRICOLA)

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  6. Book: Plant amino acids

    Singh, Bijay K.

    biochemistry and biotechnology

    (Books in soils, plants, and the environment ; [69])

    1999  

    Title variant Plant amino-acids
    Author's details ed. by Bijay K. Singh
    Series title Books in soils, plants, and the environment ; [69]
    Collection
    Keywords Pflanzenphysiologie ; Stickstoffstoffwechsel ; Biosynthese ; Aminosäuren ; Pflanzen ; Pflanzeninhaltsstoff ; Biotechnologie
    Subject Technische Biochemie ; Technische Biologie ; Biotechnik ; Biotech ; Aminosäuren ; Aminocarbonsäuren ; Aminosäure ; Pflanzen ; Pflanzenstoff ; Sekundärer Pflanzenstoff ; Pflanzlicher Inhaltsstoff ; Phytochemikalie ; Pflanzenwirkstoff ; Sekundärer Pflanzeninhaltsstoff ; Flora ; Pflanze ; Landpflanzen ; Stickstoff ; Stickstoffmetabolismus
    Language English
    Size IX, 621 S. : graph. Darst.
    Publisher Dekker
    Publishing place New York u.a.
    Publishing country United States
    Document type Book
    HBZ-ID HT012899106
    ISBN 0-8247-0204-2 ; 978-0-8247-0204-5
    Database Catalogue ZB MED Nutrition, Environment, Agriculture

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  7. Book: Biodiversity

    Singh, B. K.

    conservation and management

    2004  

    Author's details B. K. Singh
    Language English
    Size VIII, 586 S.
    Publisher Mangal Deep Publ
    Publishing place Jaipur
    Publishing country India
    Document type Book
    HBZ-ID HT014423089
    ISBN 81-7594-163-4 ; 978-81-7594-163-2
    Database Catalogue ZB MED Nutrition, Environment, Agriculture

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  8. Book ; Online: Optical linear-nonlinear and dispersion parameters of thermally evaporated SnS thin films as absorber material for solar cells

    Vinita / Arun, P. / Kumar, Chandra / Rai, R. / Singh, B. K.

    2023  

    Abstract: In this manuscript, we report the results of optical properties of SnS thin films, deposited on FTO coated glass substrates at room temperature by thermal evaporation technique. In addition, the effect of film thickness on the optical behavior of FTO/SnS ...

    Abstract In this manuscript, we report the results of optical properties of SnS thin films, deposited on FTO coated glass substrates at room temperature by thermal evaporation technique. In addition, the effect of film thickness on the optical behavior of FTO/SnS is analyzed and obtained results are compared with data of SnS films grown on glass and ITO substrates. Our study indicates that the properties of SnS film are independent of the substrate material. Further, the influence of the film thickness on the other optical parameters including, linear and third order nonlinear optical constants and dispersion parameters have also been investigated using the transmission, reflection, and absorption spectra. It is found that the optical band gap decreases from 2.07 to 1.30 eV with increase in SnS film thickness, whereas the refractive index increases with increasing thickness. Additionally, the oscillator energy, and the dispersion energy are estimated using WempleDiDomenico approach. The dispersion energies are in the range of 7.20 to 4.59 eV, while the oscillator energies of the thin films are in the range of 5.49 to 2.24 eV. Moreover, the nonlinear refractive index, and optical susceptibility are calculated by using the empirical relation of Tichy and Ticha. The volume of data suggests optical properties of SnS thin films are strongly dependent on film thickness.

    Comment: 24 pages, 11 figures
    Keywords Condensed Matter - Materials Science
    Subject code 535
    Publishing date 2023-01-19
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article: Evaluation of Recurrence and Hearing Outcome for Inactive Squamosal Disease after Cartilage Strengthening Tympanoplasty.

    Gupta, Priyanshi / Rawat, Digvijay Singh / Aseri, Yogesh / Verma, P C / Singh, B K

    International archives of otorhinolaryngology

    2022  Volume 26, Issue 4, Page(s) e624–e629

    Abstract: ... ...

    Abstract Introduction
    Language English
    Publishing date 2022-02-22
    Publishing country Brazil
    Document type Journal Article
    ZDB-ID 2578584-9
    ISSN 1809-4864 ; 1809-9777
    ISSN (online) 1809-4864
    ISSN 1809-9777
    DOI 10.1055/s-0042-1742762
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Efficacy of Certain Insecticides Against Brinjal Shoot and Fruit Borer Leucinodes Orbonalis Guenee

    Singh, B K / Pandey, Rakesh / Singh, A K / Dwivedi, S V

    Indian journal of entomology. 2021 Sept. 29, v. 83, no. 3

    2021  

    Abstract: Brinjal (Solanum melongena L.) is an important vegetable crop, and its yield and marketable quality are severely affected by the brinjal shoot and fruit borer (Leucinodes orbonalis Guenee). The management of L. orbonalis requires exploring new ... ...

    Abstract Brinjal (Solanum melongena L.) is an important vegetable crop, and its yield and marketable quality are severely affected by the brinjal shoot and fruit borer (Leucinodes orbonalis Guenee). The management of L. orbonalis requires exploring new insecticides, and in the present study some insecticides were evaluated during 2015–16 and 2016–17. The results revealed that spinosad 45SC @ 0.5 ml/ l was the best with least shoot (2.03 and 2.0%) and fruit damage (12.66 and 10.62%) with maximum yield (25.39 and 26.99 t/ ha). Chlorantraniliprole 20SC @ 0.4 ml/ l and emamectin benzoate 5SG @ 0.5 g/ l were the next best during 2015–16 and 2016–17, respectively. Thus, spinosad 45SC @ 0.5 ml/ l, chlorantraniliprole 20SC @ 0.4 ml/ l and emamectin benzoate 5SG @ 0.5 g/ l can be recommended as sole application or in rotation for effective management of brinjal shoot and fruit borer.
    Keywords Leucinodes orbonalis ; Solanum melongena ; eggplants ; entomology ; fruits ; plant damage ; spinosad ; vegetable crops
    Language English
    Dates of publication 2021-0929
    Size p. 464-467.
    Publishing place The Entomological Society Of India
    Document type Article
    ISSN 0974-8172
    DOI 10.5958/0974-8172.2020.00207.2
    Database NAL-Catalogue (AGRICOLA)

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