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  1. Article ; Online: Lysines K117 and K147 play conserved roles in Ras activation from Drosophila to mammals.

    Singh, Jiya / Karunaraj, Prashath / Luf, Max / Pfleger, Cathie M

    G3 (Bethesda, Md.)

    2023  Volume 13, Issue 11

    Abstract: Ras signaling plays an important role in growth, proliferation, and developmental patterning. Maintaining appropriate levels of Ras signaling is important to establish patterning in development and to prevent diseases such as cancer in mature organisms. ... ...

    Abstract Ras signaling plays an important role in growth, proliferation, and developmental patterning. Maintaining appropriate levels of Ras signaling is important to establish patterning in development and to prevent diseases such as cancer in mature organisms. The Ras protein is represented by Ras85D in Drosophila and by HRas, NRas, and KRas in mammals. In the past dozen years, multiple reports have characterized both inhibitory and activating ubiquitination events regulating Ras proteins. Inhibitory Ras ubiquitination mediated by Rabex-5 or Lztr1 is highly conserved between flies and mammals. Activating ubiquitination events at K117 and K147 have been reported in mammalian HRas, NRas, and KRas, but it is unclear if these activating roles of K117 and K147 are conserved in flies. Addressing a potential conserved role for these lysines in Drosophila Ras activation requires phenotypes strong enough to assess suppression. Therefore, we utilized oncogenic Ras, RasG12V, which biases Ras to the GTP-loaded active conformation. We created double mutants RasG12V,K117R and RasG12V,K147R and triple mutant RasG12V,K117R,K147R to prevent lysine-specific post-translational modification of K117, K147, or both, respectively. We compared their phenotypes to RasG12V in the wing to reveal the roles of these lysines. Although RasG12V,K147R did not show compelling or quantifiable differences from RasG12V, RasG12V,K117R showed visible and quantifiable suppression compared to RasG12V, and triple mutant RasG12V,K117R,K147R showed dramatic suppression compared to RasG12V and increased suppression compared to RasG12V,K117R. These data are consistent with highly conserved roles for K117 and K147 in Ras activation from flies to mammals.
    MeSH term(s) Animals ; Proto-Oncogene Proteins p21(ras)/genetics ; Drosophila/genetics ; Drosophila/metabolism ; Lysine ; ras Proteins/genetics ; ras Proteins/metabolism ; Mammals/genetics ; Drosophila Proteins/genetics ; Drosophila Proteins/metabolism ; Ubiquitin-Protein Ligases/metabolism
    Chemical Substances Proto-Oncogene Proteins p21(ras) (EC 3.6.5.2) ; Lysine (K3Z4F929H6) ; ras Proteins (EC 3.6.5.2) ; Rabex-5 protein, Drosophila (EC 6.3.2.-) ; Drosophila Proteins ; Ubiquitin-Protein Ligases (EC 2.3.2.27) ; Ras85D protein, Drosophila (EC 3.6.5.2)
    Language English
    Publishing date 2023-09-02
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2629978-1
    ISSN 2160-1836 ; 2160-1836
    ISSN (online) 2160-1836
    ISSN 2160-1836
    DOI 10.1093/g3journal/jkad201
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: The Mechanism of Action of Lactoferrin - Nucleoside Diphosphate Kinase Complex in Combating Biofilm Formation.

    Sikarwar, Juhi / Singh, Jiya / Singh, Tej P / Sharma, Pradeep / Sharma, Sujata

    Protein and peptide letters

    2022  Volume 29, Issue 10, Page(s) 839–850

    Abstract: Background: The ESKAPE group of pathogens which comprise of multidrug resistant bacteria, namely Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter species are the cause ... ...

    Abstract Background: The ESKAPE group of pathogens which comprise of multidrug resistant bacteria, namely Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter species are the cause of deadly nosocomial infections all over the world. While these pathogens have developed robust strategies to resist most antibiotics, their ability to form biofilms is one of their most combative properties. Hence there is an urgent need to discover new antibacterial agents which could prevent or destroy the biofilms made by these bacteria. Though it has been established that lactoferrin (LF), a potent iron binding antibacterial, antifungal, and antiviral protein displays anti-biofilm properties, its mechanisms of action, in addition to its iron chelation property, still remains unclear.
    Objective: The binding and inhibition studies of LF with the enzyme Nucleoside diphosphate Kinase (NDK) and its elastase cleaved truncated 12 kDa fragment (12-NDK).
    Methods: The characterization studies of NDK and 12-NDK using florescence spectroscopy, dynamic light scattering, size exclusion chromatography and ADP-glo Kinase Assay. Inhibition studies of LF-NDK using ADP-glo kinase assay, Surface Plasmon Resonance and Biofilm inhibition studies.
    Results: NDK and 12-NDK were cloned, expressed and purified from Acinetobacter baumannii and Pseudomonas aeruginosa. The characterization studies revealed NDK and 12-NDK from both species are stable and functional. The inhibition studies of LF-NDK revealed stable binding and inhibition of kinase activity by LF.
    Conclusion: The binding and inhibition studies have shown that while LF binds with both the NDK and their truncated forms, it tends to have a higher binding affinity with the truncated 12 kDa fragments, resulting in their decreased kinase activity. This study essentially gives a new direction to the field of inhibition of biofilm formation, as it proves that LF has a novel mechanism of action in other than iron sequestration.
    MeSH term(s) Nucleoside-Diphosphate Kinase/chemistry ; Nucleoside-Diphosphate Kinase/metabolism ; Lactoferrin/pharmacology ; Pseudomonas aeruginosa ; Acinetobacter baumannii ; Anti-Bacterial Agents/pharmacology ; Iron ; Adenosine Diphosphate
    Chemical Substances Nucleoside-Diphosphate Kinase (EC 2.7.4.6) ; Lactoferrin (EC 3.4.21.-) ; Anti-Bacterial Agents ; Iron (E1UOL152H7) ; Adenosine Diphosphate (61D2G4IYVH)
    Language English
    Publishing date 2022-08-17
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1280776-x
    ISSN 1875-5305 ; 0929-8665
    ISSN (online) 1875-5305
    ISSN 0929-8665
    DOI 10.2174/0929866529666220816160517
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Lactoferrin and its nano-formulations in rare eye diseases.

    Singh, Jiya / Sharma, Mohita / Jain, Neha / Aftab, Insha / Vikram, Naval / Singh, Tej P / Sharma, Pradeep / Sharma, Sujata

    Indian journal of ophthalmology

    2022  Volume 70, Issue 7, Page(s) 2328–2334

    Abstract: Lactoferrin (LF) is an iron-binding glycoprotein released from mucous secreting cells and neutrophils. LF can be used in a broad range of eye diseases related to the retina, cornea, and optic nerve. The retina is particularly affected by oxidative stress ...

    Abstract Lactoferrin (LF) is an iron-binding glycoprotein released from mucous secreting cells and neutrophils. LF can be used in a broad range of eye diseases related to the retina, cornea, and optic nerve. The retina is particularly affected by oxidative stress inside the photoreceptor being constantly exposed to light which induces accumulation of reactive oxygen species (ROS) in the retinal pigmented epithelium (RPE) causing damage to photoreceptor recycling. Retinitis pigmentosa (RP) and macular degeneration are inherited retinopathies that consist of different disease-causing genes, that cause mutations with highly varied clinical consequences. Age-related macular degeneration is a chronic disease of the retina and one of the major causes of sight loss. This review provides an application of lactoferrin and LF-based nano-formulations or nanoparticles in the field of retinal diseases or corneal diseases such as retinitis pigmentosa, retinoblastoma, age-related macular degeneration (AMD), keratoconus and uveitis. Several studies have found that lactoferrin's antibacterial activity is not limited to its iron sequestration, but also its ability as a nanoparticle that acts as a carrier to deliver drugs by crossing the blood-retina barrier (BRB) and its involvement in cell cycle control, which is not possible by many transferrin proteins.
    MeSH term(s) Humans ; Iron/metabolism ; Lactoferrin/metabolism ; Macular Degeneration/metabolism ; Retina/metabolism ; Retinitis Pigmentosa/metabolism
    Chemical Substances Iron (E1UOL152H7) ; Lactoferrin (EC 3.4.21.-)
    Language English
    Publishing date 2022-07-06
    Publishing country India
    Document type Journal Article ; Review
    ZDB-ID 187392-1
    ISSN 1998-3689 ; 0301-4738
    ISSN (online) 1998-3689
    ISSN 0301-4738
    DOI 10.4103/ijo.IJO_303_22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Predictive Value of Adiposity Index in Identifying Depression in Individuals with Type 2 Diabetes Mellitus in Indian Population

    Singh, Jiya / Singh, Praveen Kumar / Nain, Rashmi / Kant, Ravi / Das, Anindya / Mirza, Anissa Atif / Saha, Sarama

    Journal of Laboratory Physicians

    2023  

    Abstract: Objectives: Type 2 diabetes mellitus (T2DM) patients are four times more prone to develop depression. Common subjective tool to evaluate depression is Patient Health Questionnaire-9 (PHQ-9). Depression in T2DM remains unaddressed because of lack of ... ...

    Abstract Objectives: Type 2 diabetes mellitus (T2DM) patients are four times more prone to develop depression. Common subjective tool to evaluate depression is Patient Health Questionnaire-9 (PHQ-9). Depression in T2DM remains unaddressed because of lack of objective tools resulting in poor treatment compliance. Both obesity and metabolic disturbances could influence mental health status. Therefore, this study was designed to determine the better adiposity index to predict depression in T2DM.
    Subjects and Methods: In this clinic-based cross-sectional study, 400 individuals (260 = T2DM and 140 = healthy) were recruited. Based on PHQ-9, T2DM patients were divided into T2DM + Dep (PHQ-9 ≥ 10) and T2DM-Dep (PHQ-9 < 10). The relationship between the PHQ-9 score and adiposity indices was examined by Pearson's/ Spearman's correlation. The receiver-operating characteristic curve analysis was used to identify the cutoff value.
    Results: Female diabetic patients showed significant correlation only in lipid accumulation product index (LAPI) and visceral adiposity index (VAI) ( r  = 0.206 and r  = 0.0.237, respectively), while male diabetic patients did not show any significant association. Interestingly, T2DM + Dep group showed significant association between LAPI ( r  = 0.248) with PHQ-9 score, while T2DM-Dep group did not show significant association. VAI had maximum area under the curve in T2DM patients (0.619, p  = 0.002) as well as in female diabetic patients (0.684, p  = 0.002). The cutoff value for identifying depression among diabetic individuals was 5.60, with 70.3% sensitivity and 48.2% specificity, while in diabetic females, it was 6.612, with 70% sensitivity and 61.4% specificity.
    Conclusion: VAI might be the best adiposity index to predict depression among diabetic individuals.
    Keywords type 2 diabetes mellitus ; adiposity indices ; Patient Health Questionnaire-9 ; receiver-operating characteristic curve ; visceral adiposity index ; lipid accumulation product index
    Language English
    Publishing date 2023-07-28
    Publisher Thieme Medical and Scientific Publishers Pvt. Ltd.
    Publishing place Stuttgart ; New York
    Document type Article
    ZDB-ID 2461120-7
    ISSN 0974-7826 ; 0974-2727 ; 0974-7826
    ISSN (online) 0974-7826
    ISSN 0974-2727 ; 0974-7826
    DOI 10.1055/s-0043-1771402
    Database Thieme publisher's database

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  5. Article: Lactosmart: A Novel Therapeutic Molecule for Antimicrobial Defense.

    Singh, Jiya / Vijayan, Viswanathan / Ahmedi, Saiema / Pant, Pradeep / Manzoor, Nikhat / Singh, Tej P / Sharma, Pradeep / Sharma, Sujata

    Frontiers in microbiology

    2021  Volume 12, Page(s) 672589

    Abstract: The problem of antibiotic resistance has prompted researchers around the globe to search for new antimicrobial agents. Antimicrobial proteins and peptides are naturally secreted by almost all the living organisms to fight infections and can be safer ... ...

    Abstract The problem of antibiotic resistance has prompted researchers around the globe to search for new antimicrobial agents. Antimicrobial proteins and peptides are naturally secreted by almost all the living organisms to fight infections and can be safer alternatives to chemical antibiotics. Lactoferrin (LF) is a known antimicrobial protein present in all body secretions. In this study, LF was digested by trypsin, and the resulting hydrolysates were studied with respect to their antimicrobial properties. Among the hydrolysates, a 21-kDa basic fragment of LF (termed lactosmart) showed promise as a new potent antimicrobial agent. The antimicrobial studies were performed on various microorganisms including
    Language English
    Publishing date 2021-06-18
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2021.672589
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: A Peptide Bond from the Inter-lobe Segment in the Bilobal Lactoferrin Acts as a Preferred Site for Cleavage for Serine Proteases to Generate the Perfect C-lobe: Structure of the Pepsin Hydrolyzed Lactoferrin C-lobe at 2.28 Å Resolution.

    Singh, Jiya / Maurya, Ankit / Singh, Prashant K / Viswanathan, V / Ahmad, Md Irshad / Sharma, Pradeep / Sharma, Sujata / Singh, Tej P

    The protein journal

    2021  Volume 40, Issue 6, Page(s) 857–866

    Abstract: C-lobe represents the C-terminal half of lactoferrin which is a bilobal 80 kDa iron binding glycoprotein. The two lobes are designated as N-lobe (Ser1-Glu333) and C-lobe (Arg344-Arg689). The N- and C-lobes are connected by a 10-residue long α-helical ... ...

    Abstract C-lobe represents the C-terminal half of lactoferrin which is a bilobal 80 kDa iron binding glycoprotein. The two lobes are designated as N-lobe (Ser1-Glu333) and C-lobe (Arg344-Arg689). The N- and C-lobes are connected by a 10-residue long α-helical peptide (Thr334-Thr343). Both lobes adopt similar conformations and have identical iron binding sites. The bilobal lactoferrin was hydrolyzed in a limited proteolysis using pepsin at pH 2.0. It produced a 40 kDa and fully functional C-lobe which was purified and crystallized at pH 8.0. The structure determination revealed that the structure contained residues from Tyr342 to Arg689 representing a fully functional monoferric C-lobe. It showed that pepsin cleaved lactoferrin at the peptide bond Arg341-Tyr342 which is part of the inter-lobe decapeptide. Interestingly, the two previously determined structures of the enzymatically produced C-lobe using trypsin and proteinase K also cleaved lactoferrin at the same peptide bond Arg341-Tyr342. This was a striking result as the three enzymes, pepsin, trypsin and proteinase K have different specificity requirements and yet they cleaved the bilobal lactoferrin at the same peptide bond and generated an identical and fully functional C-lobe. This shows that the observed cleavage site in lactoferrin adopts a highly favourable conformation for proteolysis. It is noteworthy that the three enzymes with different specificities cut the protein at the same peptide bond which may be of physiological significance because the antibacterial action of lactoferrin is extended further through the C-lobe.
    MeSH term(s) Binding Sites ; Iron/metabolism ; Lactoferrin ; Pepsin A ; Serine Proteases
    Chemical Substances Iron (E1UOL152H7) ; Serine Proteases (EC 3.4.-) ; Lactoferrin (EC 3.4.21.-) ; Pepsin A (EC 3.4.23.1)
    Language English
    Publishing date 2021-11-03
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2143071-8
    ISSN 1875-8355 ; 1572-3887
    ISSN (online) 1875-8355
    ISSN 1572-3887
    DOI 10.1007/s10930-021-10028-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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