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  1. Article: Monitoring and molecular characterization of bacterial species in heavy metals contaminated roadside soil of selected region along NH 8A, Gujarat.

    Singh, Snigdha / Hiranmai, R Y

    Heliyon

    2021  Volume 7, Issue 11, Page(s) e08284

    Abstract: Heavy metal contamination is a universal concern due to health risks associated with metal pollution. Soil contamination by heavy metals is known to affect microbial activities at elevated concentrations adversely. However, indigenous soil bacterial ... ...

    Abstract Heavy metal contamination is a universal concern due to health risks associated with metal pollution. Soil contamination by heavy metals is known to affect microbial activities at elevated concentrations adversely. However, indigenous soil bacterial populations' response to added heavy metal and metal combinations is poorly understood. Microbes prevailing in the soil are the driving factors. Their properties are recognized as sensitive indicators of soil quality and health. Moreover, these microscopic organisms are accountable for the fertility and aeration of the soil that forms fundamental aspects of soil function. The current study was performed to explore the diversity of bacterial species in heavy metal polluted roadside soil. The roadside soil samples were collected from diverse sites and processed for physicochemical properties, microbial characterization, and heavy metals distribution in the selected locations. Serial dilution and spread plate techniques were used for the isolation of bacterial species. The 16S-rRNA gene sequencing identified bacterial species in roadside soil as
    Language English
    Publishing date 2021-10-29
    Publishing country England
    Document type Journal Article
    ZDB-ID 2835763-2
    ISSN 2405-8440
    ISSN 2405-8440
    DOI 10.1016/j.heliyon.2021.e08284
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Monitoring and molecular characterization of bacterial species in heavy metals contaminated roadside soil of selected region along NH 8A, Gujarat

    Singh, Snigdha / Hiranmai, R.Y.

    Heliyon. 2021 Nov., v. 7, no. 11

    2021  

    Abstract: Heavy metal contamination is a universal concern due to health risks associated with metal pollution. Soil contamination by heavy metals is known to affect microbial activities at elevated concentrations adversely. However, indigenous soil bacterial ... ...

    Abstract Heavy metal contamination is a universal concern due to health risks associated with metal pollution. Soil contamination by heavy metals is known to affect microbial activities at elevated concentrations adversely. However, indigenous soil bacterial populations' response to added heavy metal and metal combinations is poorly understood. Microbes prevailing in the soil are the driving factors. Their properties are recognized as sensitive indicators of soil quality and health. Moreover, these microscopic organisms are accountable for the fertility and aeration of the soil that forms fundamental aspects of soil function. The current study was performed to explore the diversity of bacterial species in heavy metal polluted roadside soil. The roadside soil samples were collected from diverse sites and processed for physicochemical properties, microbial characterization, and heavy metals distribution in the selected locations. Serial dilution and spread plate techniques were used for the isolation of bacterial species. The 16S-rRNA gene sequencing identified bacterial species in roadside soil as Bacillus drentensis (MK217088), Bacillus safensis (MK774729), Bacillus haynesii (MK192808), Bacillus subtilis (MK217089), and Bacillus cereus (MK801278). In addition, the 16S rRNA sequences of isolated bacterial strains were aligned to generate a phylogenetic tree. Thus, the current research study provides a platform for efficiently investigating roadside soils by microbial profiling that may discover novel microbes of scientific significance and improved potential.
    Keywords Bacillus cereus ; Bacillus safensis ; Bacillus subtilis ; aeration ; genes ; heavy metals ; phylogeny ; roadside soils ; roadsides ; soil bacteria ; soil function ; soil pollution ; soil quality ; India
    Language English
    Dates of publication 2021-11
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 2835763-2
    ISSN 2405-8440
    ISSN 2405-8440
    DOI 10.1016/j.heliyon.2021.e08284
    Database NAL-Catalogue (AGRICOLA)

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  3. Article: Primary Laryngeal Aspergillosis - Case Series, Reported in a Tertiary Care Hospital, Bhubaneswar, Odisha, India.

    Panda, Nishant / Singh, Snigdha / Pradhan, Nishikanta

    Indian journal of otolaryngology and head and neck surgery : official publication of the Association of Otolaryngologists of India

    2022  Volume 75, Issue 2, Page(s) 917–920

    Abstract: We report 2 vocal fold aspergillosis cases from Otolaryngology department of a tertiary hospital, Bhubaneswar. A 26 years old female visited the OPD with chief complaint of progressive hoarseness and pain while talking since 6 months. While another 29 ... ...

    Abstract We report 2 vocal fold aspergillosis cases from Otolaryngology department of a tertiary hospital, Bhubaneswar. A 26 years old female visited the OPD with chief complaint of progressive hoarseness and pain while talking since 6 months. While another 29 years old female complained of having progressive hoarseness since 4 months preceded by an episode of sore throat. Both cases had microlaryngeal surgery/ endo laryngeal surgery followed by excisional biopsy.
    Language English
    Publishing date 2022-10-03
    Publishing country India
    Document type Journal Article
    ZDB-ID 1471137-0
    ISSN 0973-7707 ; 2231-3796 ; 0019-5421
    ISSN (online) 0973-7707
    ISSN 2231-3796 ; 0019-5421
    DOI 10.1007/s12070-022-03207-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: An expeditious on-water regioselective synthesis of novel arylidene-hydrazinyl-thiazoles as DNA targeting agents.

    Aggarwal, Ranjana / Hooda, Mona / Kumar, Prince / Kumar, Suresh / Singh, Snigdha / Chandra, Ramesh

    Bioorganic chemistry

    2023  Volume 136, Page(s) 106524

    Abstract: A series of twenty novel (E)-arylidene-hydrazinyl-thiazole derivatives has been synthesized employing α-bromo-β-diketones, thiosemicarbazide, and aromatic/heteroaromatic aldehydes with a simple and facile one-pot multicomponent reaction passageway. This ... ...

    Abstract A series of twenty novel (E)-arylidene-hydrazinyl-thiazole derivatives has been synthesized employing α-bromo-β-diketones, thiosemicarbazide, and aromatic/heteroaromatic aldehydes with a simple and facile one-pot multicomponent reaction passageway. This organic transformation proceeds efficiently in aqueous media and demonstrated a large functional group tolerance. The structures and stereochemistry of the regioisomeric product were rigorously characterized using heteronuclear 2D NMR experiments. The binding potential of the synthesized analogs with B-DNA dodecamer d(CGCGAATTCGCG)
    MeSH term(s) Thermodynamics ; Nucleic Acid Conformation ; DNA/chemistry ; Models, Molecular ; Circular Dichroism ; Spectrometry, Fluorescence ; Molecular Docking Simulation
    Chemical Substances DNA (9007-49-2)
    Language English
    Publishing date 2023-04-07
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 120080-x
    ISSN 1090-2120 ; 0045-2068
    ISSN (online) 1090-2120
    ISSN 0045-2068
    DOI 10.1016/j.bioorg.2023.106524
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Osteonecrosis of the Jaws: An Update and Review of Literature.

    Kalita, Flora / Gupta, Durga Shanker / Gehlot, Neelima / Mitra, Subhajit / Singh, Snigdha / Pillai, Sooraj S

    Journal of maxillofacial and oral surgery

    2023  Volume 22, Issue 2, Page(s) 344–351

    Abstract: Aim: To provide a concise review on risk factors, stages, pathophysiology, prevention and possible treatment options for both MRONJ and ORN individually.: Methods: The review was conducted according to the 'Preferred Reporting Items for Systematic ... ...

    Abstract Aim: To provide a concise review on risk factors, stages, pathophysiology, prevention and possible treatment options for both MRONJ and ORN individually.
    Methods: The review was conducted according to the 'Preferred Reporting Items for Systematic Reviews and Meta-Analyses' (PRISMA) guidelines. A comprehensive search of the PUBMED, Ebsco, SCOPUS, WEB OF SCIENCE and NDH for articles published up until 2021 was performed. After screening and full text analyses, 44 studies were included in this review. Definition, risk factors, etiology, symptoms, stages, pathophysiology, prevention and possible management options were explored and highlighted in this article.
    Results: Three studies described osteonecrosis of jaw (ONJ) in general, 15 studies described ONJ associated with radiotherapy and 26 studies described ONJ associated with medications. Both the two conditions (ORN) and (MRONJ) have relatively similar clinical presentations clearing the fact that a resemblance in clinical presentations does not necessarily denote a similar pathophysiology.
    Conclusion: However, various advancements have been made in the control and management of ONJ, but until and unless need for high tumoricidal doses exists, ONJ will certainly continue to remain as a clinical challenge demanding satisfactory treatment to improve the quality of life of the patient.
    Language English
    Publishing date 2023-03-05
    Publishing country India
    Document type Journal Article ; Review
    ZDB-ID 2502352-4
    ISSN 0974-942X ; 0972-8279
    ISSN (online) 0974-942X
    ISSN 0972-8279
    DOI 10.1007/s12663-023-01876-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Recent advancements on

    Singh, Snigdha / Agrawal, Mukta / Vashist, Rajat / Patel, Rohit K / Sangave, Sanchita Dhanchandra / Alexander, Amit

    Expert opinion on drug delivery

    2023  Volume 20, Issue 12, Page(s) 1839–1857

    Abstract: Introduction: The efficiency of brain therapeutics is greatly hindered by the blood-brain barrier (BBB). BBB's protective function, selective permeability, and dynamic functionality maintain the harmony between the brain and peripheral region. Thus, the ...

    Abstract Introduction: The efficiency of brain therapeutics is greatly hindered by the blood-brain barrier (BBB). BBB's protective function, selective permeability, and dynamic functionality maintain the harmony between the brain and peripheral region. Thus, the design of any novel drug carrier system requires the complete study and investigation of BBB permeability, efflux transport, and the effect of associated cellular and non-vascular unit trafficking on BBB penetrability. The in vitro BBB models offer a most promising, and reliable mode of initial investigation of BBB permeability and associated factors as strong evidence for further preclinical and clinical investigation.
    Area covered: This review work covers the structure and functions of BBB components and different types of in vitro BBB models along with factors affecting BBB model development and model selection criteria.
    Expert opinion: In vivo models assume to reciprocate the physiological environment to the maximum extent. However, the interspecies variability, NVUs trafficking, dynamic behavior of BBB, etc., lead to non-reproducible results. The in vitro models are comparatively less complex, and flexible, as per the study design, could generate substantial evidence and help identify suitable in vivo animal model selection.
    MeSH term(s) Animals ; Blood-Brain Barrier ; Brain ; Biological Transport ; Endothelial Cells ; Permeability
    Language English
    Publishing date 2023-12-29
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2167286-6
    ISSN 1744-7593 ; 1742-5247
    ISSN (online) 1744-7593
    ISSN 1742-5247
    DOI 10.1080/17425247.2023.2295940
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Visible Light-Prompted Regioselective Synthesis of Novel 5-Aroyl/hetaroyl-2',4-dimethyl-2,4'-bithiazoles as DNA- and BSA-Targeting Agents.

    Aggarwal, Ranjana / Jain, Naman / Dubey, Gyan Prakash / Singh, Snigdha / Chandra, Ramesh

    Biomacromolecules

    2023  Volume 24, Issue 11, Page(s) 4798–4818

    Abstract: Organic transformations mediated by visible light have gained popularity in recent years as they are green, renewable, inexpensive, and clean and yield excellent products. The present study describes cyclo-condensation of 2-methylthiazole-4- ... ...

    Abstract Organic transformations mediated by visible light have gained popularity in recent years as they are green, renewable, inexpensive, and clean and yield excellent products. The present study describes cyclo-condensation of 2-methylthiazole-4-carbothioamide with differently substituted α-bromo-1,3-diketones achieved by utilizing a white light-emitting diode (LED) (9W) to accomplish the regioselective synthesis of novel 5-aroyl/hetaroyl-2',4-dimethyl-2,4'-bithiazole derivatives as DNA/bovine serum albumin (BSA)-targeting agents. The structure characterization of the exact regioisomer was achieved unequivocally by heteronuclear two-dimensional nuclear magnetic resonance (2D-NMR) spectroscopy [
    MeSH term(s) Binding Sites ; Serum Albumin, Bovine/chemistry ; Molecular Docking Simulation ; Spectrometry, Fluorescence ; Protein Binding ; DNA/chemistry ; Circular Dichroism ; Thermodynamics ; Spectrophotometry, Ultraviolet
    Chemical Substances Serum Albumin, Bovine (27432CM55Q) ; DNA (9007-49-2)
    Language English
    Publishing date 2023-09-20
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1526-4602
    ISSN (online) 1526-4602
    DOI 10.1021/acs.biomac.3c00554
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Quality of Life Assessment in Diabetic Patients Using a Validated Tool in a Patient Population Visiting a Tertiary Care Center in Bhubaneswar, Odisha, India.

    Meher, Dayanidhi / Kar, Sonali / Pathak, Mona / Singh, Snigdha

    TheScientificWorldJournal

    2020  Volume 2020, Page(s) 7571838

    Abstract: Odisha has 4.2 million diabetic patients against the country's 70 million with an urban prevalence of nearly 15.4%. Diabetes is affecting younger age groups, thus having a crucial impact on quality of life of the affected. A qualitative endeavour was ... ...

    Abstract Odisha has 4.2 million diabetic patients against the country's 70 million with an urban prevalence of nearly 15.4%. Diabetes is affecting younger age groups, thus having a crucial impact on quality of life of the affected. A qualitative endeavour was attempted at the diabetic clinic of a tertiary care set up in the capital city of Bhubaneswar to create a diabetic surveillance data assembly, wherein subjects above 18 years of age and newly diagnosed or on follow-up, after obtaining informed consent, were made to respond to a quality of life (QOLID) validated tool. The pretested tool has 8-domain role limitation due to physical health, physical endurance, general health, treatment satisfaction, symptom botherness, financial worries, emotional/mental health, and diet advice tolerance. The validated tool had 34 items (questions) that were selected to represent these domains on the basis of extraction communality, factor loading, and interitem and item-total correlations. The final questionnaire had an overall Cronbach's alpha value of 0.894 (subscale: 0.55 to 0.85), showing high internal consistency in the current study population. A score for each domain was calculated by simple addition of items scores. Each individual domain score was then standardized by dividing by maximum possible domain score and multiplying by 100. All individual standardized domain scores were then added and divided by 8 (number of domain) to obtain an overall score. The data collection was done for 400 patients as an interim analysis. Univariate and subsequently multivariate analysis was performed to decide the predictors that affected quality of life. Age over 50 years (OR = 1.81, CI 1.12-2.93;
    MeSH term(s) Adult ; Aged ; Ambulatory Care ; Diabetes Mellitus/epidemiology ; Female ; Humans ; India/epidemiology ; Male ; Middle Aged ; Odds Ratio ; Public Health Surveillance ; Quality of Life ; Tertiary Care Centers
    Language English
    Publishing date 2020-12-29
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2075968-X
    ISSN 1537-744X ; 1537-744X
    ISSN (online) 1537-744X
    ISSN 1537-744X
    DOI 10.1155/2020/7571838
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Prognostic significance of circulating microparticles in IgA nephropathy.

    Bharti, Niharika / Rai, Mohit Kumar / Singh, Snigdha / Agarwal, Vikas / Prasad, Narayan / Pandey, Rakesh / Agrawal, Vinita

    International urology and nephrology

    2023  Volume 56, Issue 3, Page(s) 1071–1081

    Abstract: Purpose: Endothelial injury, involved in the pathogenesis of renal fibrosis, can generate microparticles (MPs). These are 0.1-1 µm membrane-bound vesicles shed from the damaged or activated cell surfaces. We analyzed the presence of circulating MPs and ... ...

    Abstract Purpose: Endothelial injury, involved in the pathogenesis of renal fibrosis, can generate microparticles (MPs). These are 0.1-1 µm membrane-bound vesicles shed from the damaged or activated cell surfaces. We analyzed the presence of circulating MPs and EnMPs in IgAN and correlated with markers of endothelial injury and disease activity.
    Methods: The study included 30 IgAN (mean age 31.5 ± 9 years), 25 healthy controls and Lupus nephritis (n = 10) as disease controls. Circulating MPs were quantitated by Flow cytometry and EnMPs were analyzed using anti-CD31-FITC and anti-CD146-PE antibodies. Their levels were correlated with serum von Willebrand Factor, histological Oxford MEST-C score and renal outcome. A prospective validation group of 20 patients of biopsy-proven IgA nephropathy was also included.
    Results: IgAN had significantly higher levels of MPs, EnMPs and vWF compared to controls. On multivariate analysis, plasma levels of total MPs, EnMPs and serum vWF correlated significantly with the presence of hypertension and E1 on histology. E1 and high MPs (> 130 counts/µl) were associated with shorter time to doubling of serum creatinine. MPs cutoff level of 130 counts/µl had a sensitivity of 75%, specificity of 93.3% and diagnostic accuracy of 89.5% for E1 in the validation cohort.
    Conclusion: Circulating MPs and EnMPs in IgAN correlate with E1 on histology and have a potential as non-invasive biomarkers to predict disease activity and renal outcome.
    MeSH term(s) Humans ; Young Adult ; Adult ; Glomerulonephritis, IGA/pathology ; Prognosis ; von Willebrand Factor/analysis ; Kidney/pathology ; Biomarkers
    Chemical Substances von Willebrand Factor ; Biomarkers
    Language English
    Publishing date 2023-08-24
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 204048-7
    ISSN 1573-2584 ; 0301-1623 ; 0042-1162
    ISSN (online) 1573-2584
    ISSN 0301-1623 ; 0042-1162
    DOI 10.1007/s11255-023-03743-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Insights into eukaryotic evolution from transmembrane domain lengths.

    Mittal, Aditya / Singh, Snigdha

    Journal of biomolecular structure & dynamics

    2017  Volume 36, Issue 8, Page(s) 2194–2200

    Abstract: Biological membranes, comprised of proteins anchored by their trans-membrane domains (TMDs) creating a semi-permeable phase with lipid constituents, serve as 'checkposts' for not only intracellular trafficking in eukaryotic cells but also for material ... ...

    Abstract Biological membranes, comprised of proteins anchored by their trans-membrane domains (TMDs) creating a semi-permeable phase with lipid constituents, serve as 'checkposts' for not only intracellular trafficking in eukaryotic cells but also for material transactions of all living cells with external environments. Hydropathy (or hydrophobicity) plots of 'bitopic' proteins (i.e. having single alpha-helical TMDs) are routinely utilized in biochemistry texts for predicting their TMDs. The number of amino acids (i.e. TMD length) embedded as alpha-helices may serve as indicators of thickness of biological membranes in which they reside under assumptions that are universally applied for fixing window sizes for identifying TMDs using hydropathy plots. In this work we explore variations in thickness of different eukaryotic biological membranes (reflected by TMD lengths of their resident proteins) over evolutionary time scales. Rigorous in silico analyses of over 23,000 non-redundant membrane proteins residing in different subcellular locations from over 200 genomes of fungi, plants, non-mammalian vertebrates and mammals, reveal that differences in plasma membrane and organellar TMD lengths have decreased over time (scales) of eukaryotic cellular evolution. While earlier work has indicated decreasing differences in TMD lengths with increasing 'perceived' organismal complexity, this work is the first report on TMD length variations as a function of evolutionary time of eukaryotic cellular systems. We report that differences in TMD lengths of bitopic proteins residing in plasma membranes and other intra-cellular locations have decreased with evolutionary time, suggesting better/more avenues of intracellular trafficking in the emergence of eukaryotic organisms.
    MeSH term(s) Animals ; Biological Evolution ; Cell Membrane/metabolism ; Eukaryota/cytology ; Eukaryota/metabolism ; Eukaryotic Cells/metabolism ; Fungal Proteins/chemistry ; Fungal Proteins/metabolism ; Humans ; Hydrophobic and Hydrophilic Interactions ; Intracellular Membranes/metabolism ; Membrane Proteins/chemistry ; Membrane Proteins/metabolism ; Plant Proteins/chemistry ; Plant Proteins/metabolism ; Protein Domains
    Chemical Substances Fungal Proteins ; Membrane Proteins ; Plant Proteins
    Language English
    Publishing date 2017-07-06
    Publishing country England
    Document type Journal Article
    ZDB-ID 49157-3
    ISSN 1538-0254 ; 0739-1102
    ISSN (online) 1538-0254
    ISSN 0739-1102
    DOI 10.1080/07391102.2017.1345699
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