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  1. Article ; Online: Three-Dimensional Human Pose Estimation from Sparse IMUs through Temporal Encoder and Regression Decoder.

    Liao, Xianhua / Dong, Jiayan / Song, Kangkang / Xiao, Jiangjian

    Sensors (Basel, Switzerland)

    2023  Volume 23, Issue 7

    Abstract: Three-dimensional (3D) pose estimation has been widely used in many three-dimensional human motion analysis applications, where inertia-based path estimation is gradually being adopted. Systems based on commercial inertial measurement units (IMUs) ... ...

    Abstract Three-dimensional (3D) pose estimation has been widely used in many three-dimensional human motion analysis applications, where inertia-based path estimation is gradually being adopted. Systems based on commercial inertial measurement units (IMUs) usually rely on dense and complex wearable sensors and time-consuming calibration, causing intrusions to the subject and hindering free body movement. The sparse IMUs-based method has drawn research attention recently. Existing sparse IMUs-based three-dimensional pose estimation methods use neural networks to obtain human poses from temporal feature information. However, these methods still suffer from issues, such as body shaking, body tilt, and movement ambiguity. This paper presents an approach to improve three-dimensional human pose estimation by fusing temporal and spatial features. Based on a multistage encoder-decoder network, a temporal convolutional encoder and human kinematics regression decoder were designed. The final three-dimensional pose was predicted from the temporal feature information and human kinematic feature information. Extensive experiments were conducted on two benchmark datasets for three-dimensional human pose estimation. Compared to state-of-the-art methods, the mean per joint position error was decreased by 13.6% and 19.4% on the total capture and DIP-IMU datasets, respectively. The quantitative comparison demonstrates that the proposed temporal information and human kinematic topology can improve pose accuracy.
    MeSH term(s) Humans ; Movement ; Motion ; Neural Networks, Computer ; Biomechanical Phenomena ; Calibration
    Language English
    Publishing date 2023-03-28
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2052857-7
    ISSN 1424-8220 ; 1424-8220
    ISSN (online) 1424-8220
    ISSN 1424-8220
    DOI 10.3390/s23073547
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Genome-wide identification and expression analysis of NF-Y gene family in tobacco (Nicotiana tabacum L.).

    Tian, Yue / Song, Kangkang / Li, Bin / Song, Yanru / Zhang, Xiaohua / Li, Haozhen / Yang, Long

    Scientific reports

    2024  Volume 14, Issue 1, Page(s) 5257

    Abstract: Nuclear factor Y (NF-Y) gene family is an important transcription factor composed of three subfamilies of NF-YA, NF-YB and NF-YC, which is involved in plant growth, development and stress response. In this study, 63 tobacco NF-Y genes (NtNF-Ys) were ... ...

    Abstract Nuclear factor Y (NF-Y) gene family is an important transcription factor composed of three subfamilies of NF-YA, NF-YB and NF-YC, which is involved in plant growth, development and stress response. In this study, 63 tobacco NF-Y genes (NtNF-Ys) were identified in Nicotiana tabacum L., including 17 NtNF-YAs, 30 NtNF-YBs and 16 NtNF-YCs. Phylogenetic analysis revealed ten pairs of orthologues from tomato and tobacco and 25 pairs of paralogues from tobacco. The gene structure of NtNF-YAs exhibited similarities, whereas the gene structure of NtNF-YBs and NtNF-YCs displayed significant differences. The NtNF-Ys of the same subfamily exhibited a consistent distribution of motifs and protein 3D structure. The protein interaction network revealed that NtNF-YC12 and NtNF-YC5 exhibited the highest connectivity. Many cis-acting elements related to light, stress and hormone response were found in the promoter of NtNF-Ys. Transcriptome analysis showed that more than half of the NtNF-Y genes were expressed in all tissues, and NtNF-YB9/B14/B15/B16/B17/B29 were specifically expressed in roots. A total of 15, 12, 5, and 6 NtNF-Y genes were found to respond to cold, drought, salt, and alkali stresses, respectively. The results of this study will lay a foundation for further study of NF-Y genes in tobacco and other Solanaceae plants.
    MeSH term(s) Nicotiana/genetics ; Phylogeny ; CCAAT-Binding Factor/genetics ; Solanaceae
    Chemical Substances nuclear factor Y ; CCAAT-Binding Factor
    Language English
    Publishing date 2024-03-04
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-024-55799-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Application of Multi-Perspectives in Tea Breeding and the Main Directions.

    Li, Haozhen / Song, Kangkang / Zhang, Xiaohua / Wang, Di / Dong, Shaolin / Liu, Ying / Yang, Long

    International journal of molecular sciences

    2023  Volume 24, Issue 16

    Abstract: Tea plants are an economically important crop and conducting research on tea breeding contributes to enhancing the yield and quality of tea leaves as well as breeding traits that satisfy the requirements of the public. This study reviews the current ... ...

    Abstract Tea plants are an economically important crop and conducting research on tea breeding contributes to enhancing the yield and quality of tea leaves as well as breeding traits that satisfy the requirements of the public. This study reviews the current status of tea plants germplasm resources and their utilization, which has provided genetic material for the application of multi-omics, including genomics and transcriptomics in breeding. Various molecular markers for breeding were designed based on multi-omics, and available approaches in the direction of high yield, quality and resistance in tea plants breeding are proposed. Additionally, future breeding of tea plants based on single-cellomics, pangenomics, plant-microbe interactions and epigenetics are proposed and provided as references. This study aims to provide inspiration and guidance for advancing the development of genetic breeding in tea plants, as well as providing implications for breeding research in other crops.
    MeSH term(s) Plant Breeding ; Camellia sinensis/genetics ; Crops, Agricultural ; Cytoplasm ; Tea
    Chemical Substances Tea
    Language English
    Publishing date 2023-08-10
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms241612643
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Reconstructing 3D human pose and shape from a single image and sparse IMUs.

    Liao, Xianhua / Zhuang, Jiayan / Liu, Ze / Dong, Jiayan / Song, Kangkang / Xiao, Jiangjian

    PeerJ. Computer science

    2023  Volume 9, Page(s) e1401

    Abstract: Model-based 3D pose estimation has been widely used in many 3D human motion analysis applications, in which vision-based and inertial-based are two distinct lines. Multi-view images in a vision-based markerless capture system provide essential data for ... ...

    Abstract Model-based 3D pose estimation has been widely used in many 3D human motion analysis applications, in which vision-based and inertial-based are two distinct lines. Multi-view images in a vision-based markerless capture system provide essential data for motion analysis, but erroneous estimates still occur due to ambiguities, occlusion, or noise in images. Besides, the multi-view setting is hard for the application in the wild. Although inertial measurement units (IMUs) can obtain accurate direction without occlusion, they are usually susceptible to magnetic field interference and drifts. Hybrid motion capture has drawn the attention of researchers in recent years. Existing 3D pose estimation methods jointly optimize the parameters of the 3D pose by minimizing the discrepancy between the image and IMU data. However, these hybrid methods still suffer from the issues such as complex peripheral devices, sensitivity to initialization, and slow convergence.
    Methods: This article presents an approach to improve 3D human pose estimation by fusing a single image with sparse inertial measurement units (IMUs). Based on a dual-stream feature extract network, we design a model-attention network with a residual module to closely couple the dual-modal feature from a static image and sparse inertial measurement units. The final 3D pose and shape parameters are directly obtained by a regression strategy.
    Results: Extensive experiments are conducted on two benchmark datasets for 3D human pose estimation. Compared to state-of-the-art methods, the per vertex error (PVE) of human mesh reduces by 9.4 mm on Total Capture dataset and the mean per joint position error (MPJPE) reduces by 7.8 mm on the Human3.6M dataset. The quantitative comparison demonstrates that the proposed method could effectively fuse sparse IMU data and images and improve pose accuracy.
    Language English
    Publishing date 2023-05-24
    Publishing country United States
    Document type Journal Article
    ISSN 2376-5992
    ISSN (online) 2376-5992
    DOI 10.7717/peerj-cs.1401
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: CRISPR/Cas9 Editing Sites Identification and Multi-Elements Association Analysis in

    Li, Haozhen / Song, Kangkang / Li, Bin / Zhang, Xiaohua / Wang, Di / Dong, Shaolin / Yang, Long

    International journal of molecular sciences

    2023  Volume 24, Issue 20

    Abstract: CRISPR/Cas9 is an efficient genome-editing tool, and the identification of editing sites and potential influences in ... ...

    Abstract CRISPR/Cas9 is an efficient genome-editing tool, and the identification of editing sites and potential influences in the
    MeSH term(s) CRISPR-Cas Systems/genetics ; Camellia sinensis/genetics ; Genome, Plant ; Gene Editing/methods
    Language English
    Publishing date 2023-10-18
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms242015317
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Integrated Transcriptomics and Metabolomics Analysis Promotes the Understanding of Adventitious Root Formation in

    Du, Qingxin / Song, Kangkang / Wang, Lu / Du, Lanying / Du, Hongyan / Li, Bin / Li, Haozhen / Yang, Long / Wang, Yan / Liu, Panfeng

    Plants (Basel, Switzerland)

    2024  Volume 13, Issue 1

    Abstract: As a primary approach to nutrient propagation for many woody plants, cutting roots is essential for the breeding and production ... ...

    Abstract As a primary approach to nutrient propagation for many woody plants, cutting roots is essential for the breeding and production of
    Language English
    Publishing date 2024-01-03
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants13010136
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Structures of the essential efflux pump EfpA from

    Wang, Shuhui / Wang, Kun / Song, Kangkang / Li, Pengfei / Li, Dongying / Sun, Yajie / Mei, Ye / Xu, Chen / Liao, Maofu

    Research square

    2024  

    Abstract: As the first identified multidrug efflux pump ... ...

    Abstract As the first identified multidrug efflux pump in
    Language English
    Publishing date 2024-01-05
    Publishing country United States
    Document type Preprint
    DOI 10.21203/rs.3.rs-3740027/v1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: The Characterization of G-Quadruplexes in Tobacco Genome and Their Function under Abiotic Stress.

    Song, Kangkang / Li, Bin / Li, Haozhen / Zhang, Rui / Zhang, Xiaohua / Luan, Ruiwei / Liu, Ying / Yang, Long

    International journal of molecular sciences

    2024  Volume 25, Issue 8

    Abstract: Tobacco is an ideal model plant in scientific research. G-quadruplex is a guanine-rich DNA structure, which regulates transcription and translation. In this study, the prevalence and potential function of G-quadruplexes in tobacco were systematically ... ...

    Abstract Tobacco is an ideal model plant in scientific research. G-quadruplex is a guanine-rich DNA structure, which regulates transcription and translation. In this study, the prevalence and potential function of G-quadruplexes in tobacco were systematically analyzed. In tobacco genomes, there were 2,924,271,002 G-quadruplexes in the nuclear genome, 430,597 in the mitochondrial genome, and 155,943 in the chloroplast genome. The density of the G-quadruplex in the organelle genome was higher than that in the nuclear genome. G-quadruplexes were abundant in the transcription regulatory region of the genome, and a difference in G-quadruplex density in two DNA strands was also observed. The promoter of 60.4% genes contained at least one G-quadruplex. Compared with up-regulated differentially expressed genes (DEGs), the G-quadruplex density in down-regulated DEGs was generally higher under drought stress and salt stress. The G-quadruplex formed by simple sequence repeat (SSR) and its flanking sequence in the promoter region of the
    MeSH term(s) G-Quadruplexes ; Nicotiana/genetics ; Stress, Physiological/genetics ; Genome, Plant ; Gene Expression Regulation, Plant ; Promoter Regions, Genetic ; Droughts ; Salt Stress/genetics
    Language English
    Publishing date 2024-04-14
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms25084331
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: An update on genetic susceptibility in lupus nephritis.

    Song, Kangkang / Liu, Lu / Zhang, Xuejun / Chen, Xiangmei

    Clinical immunology (Orlando, Fla.)

    2020  Volume 215, Page(s) 108389

    Abstract: Systemic lupus erythematosus (SLE) is a chronic autoimmune disease characterized by multiple system involvement and positive serum autoantibodies. Lupus nephritis (LN) is the most common and serious complication of SLE, and it is the main cause of death ... ...

    Abstract Systemic lupus erythematosus (SLE) is a chronic autoimmune disease characterized by multiple system involvement and positive serum autoantibodies. Lupus nephritis (LN) is the most common and serious complication of SLE, and it is the main cause of death in patients with SLE. Abnormalities in the immune system lead to LN and involve a variety of cells (T cells, B cells, macrophages, NK cells, etc.), cytokines (interleukin, tumor necrosis factor α, etc.) and their related pathways. Previous studies have shown that the interactions of genetic, epigenetic and environmental factors contribute to the pathogenesis and development of LN. In recent years, one genome-wide association study (GWAS) and a number of gene association studies have explored the susceptibility genes of LN, including immunization-, inflammation-, adhesion- and other pathway-related genes. These genes participate in or suggest the pathogenesis and progression of LN. In this review, we summarize the genetic susceptibility of LN and discuss the possible mechanism underlying the susceptibility genes of LN.
    Language English
    Publishing date 2020-03-31
    Publishing country United States
    Document type Published Erratum
    ZDB-ID 1459903-x
    ISSN 1521-7035 ; 1521-6616
    ISSN (online) 1521-7035
    ISSN 1521-6616
    DOI 10.1016/j.clim.2020.108389
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Polyploid Genome Assembly Provides Insights into Morphological Development and Ascorbic Acid Accumulation of

    Xia, Fagang / Li, Bin / Song, Kangkang / Wang, Yankun / Hou, Zhuangwei / Li, Haozhen / Zhang, Xiaohua / Li, Fangping / Yang, Long

    International journal of molecular sciences

    2023  Volume 25, Issue 1

    Abstract: ... Sauropus ... ...

    Abstract Sauropus androgynus
    MeSH term(s) Phylogeny ; Polyploidy ; Ploidies ; Malpighiales ; Ascorbic Acid
    Chemical Substances Ascorbic Acid (PQ6CK8PD0R)
    Language English
    Publishing date 2023-12-25
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms25010300
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