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Article ; Online: Recounting the FANTOM CAGE-Associated Transcriptome.

Imada, Eddie Luidy / Sanchez, Diego Fernando / Collado-Torres, Leonardo / Wilks, Christopher / Matam, Tejasvi / Dinalankara, Wikum / Stupnikov, Aleksey / Lobo-Pereira, Francisco / Yip, Chi-Wai / Yasuzawa, Kayoko / Kondo, Naoto / Itoh, Masayoshi / Suzuki, Harukazu / Kasukawa, Takeya / Hon, Chung-Chau / de Hoon, Michiel J L / Shin, Jay W / Carninci, Piero / Jaffe, Andrew E /
Leek, Jeffrey T / Favorov, Alexander / Franco, Gloria R / Langmead, Ben / Marchionni, Luigi

Genome research

2020  Volume 30, Issue 7, Page(s) 1073–1081

Abstract: Long noncoding RNAs (lncRNAs) have emerged as key coordinators of biological and cellular processes. Characterizing lncRNA expression across cells and tissues is key to understanding their role in determining phenotypes, including human diseases. We ... ...

Abstract Long noncoding RNAs (lncRNAs) have emerged as key coordinators of biological and cellular processes. Characterizing lncRNA expression across cells and tissues is key to understanding their role in determining phenotypes, including human diseases. We present here FC-R2, a comprehensive expression atlas across a broadly defined human transcriptome, inclusive of over 109,000 coding and noncoding genes, as described in the FANTOM CAGE-Associated Transcriptome (FANTOM-CAT) study. This atlas greatly extends the gene annotation used in the original
MeSH term(s) Databases, Genetic ; Enhancer Elements, Genetic ; Gene Expression Profiling ; Genome, Human ; Humans ; Neoplasms/genetics ; Organ Specificity ; Prognosis ; RNA, Long Noncoding/genetics ; RNA, Long Noncoding/metabolism ; RNA, Messenger/metabolism ; Transcriptome
Chemical Substances RNA, Long Noncoding ; RNA, Messenger
Language English
Publishing date 2020-02-20
Publishing country United States
Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
ZDB-ID 1284872-4
ISSN 1549-5469 ; 1088-9051 ; 1054-9803
ISSN (online) 1549-5469
ISSN 1088-9051 ; 1054-9803
DOI 10.1101/gr.254656.119
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