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  1. Article ; Online: Comment on: In vitro activity of cefiderocol against MBL-producing Gram-negative bacteria collected in North America and Europe in five consecutive annual multinational SIDERO-WT surveillance studies (2014-2019).

    Subbarao, Sathyavani / Boyd, Sara E / Basarab, Marina / Riley, Peter

    The Journal of antimicrobial chemotherapy

    2024  

    Language English
    Publishing date 2024-05-14
    Publishing country England
    Document type Editorial ; Comment
    ZDB-ID 191709-2
    ISSN 1460-2091 ; 0305-7453
    ISSN (online) 1460-2091
    ISSN 0305-7453
    DOI 10.1093/jac/dkae110
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Trends in laboratory-confirmed bacterial meningitis (2012-2019): national observational study, England.

    Subbarao, Sathyavani / Ribeiro, Sonia / Campbell, Helen / Okike, Ifeanyichukwu / Ramsay, Mary E / Ladhani, Shamez N

    The Lancet regional health. Europe

    2023  Volume 32, Page(s) 100692

    Abstract: Background: Bacterial meningitis is associated with significant morbidity and mortality worldwide. We aimed to describe the epidemiology, aetiology, trends over time and outcomes of laboratory-confirmed bacterial meningitis in England during 2012-2019.!# ...

    Abstract Background: Bacterial meningitis is associated with significant morbidity and mortality worldwide. We aimed to describe the epidemiology, aetiology, trends over time and outcomes of laboratory-confirmed bacterial meningitis in England during 2012-2019.
    Methods: UK Health Security Agency routinely receives electronic notifications of confirmed infections from National Health Service hospital laboratories in England. Data were extracted for positive bacterial cultures, PCR-positive results for
    Findings: During 2012-19, there were 6554 laboratory-confirmed cases. Mean annual incidence was 1.49/100,000, which remained stable throughout the surveillance period (p = 0.745). There were 155 different bacterial species identified, including 68.4% (106/1550) Gram-negative and 31.6% (49/155) Gram-positive bacteria. After excluding coagulase-negative staphylococci (2481/6554, 37.9%), the main pathogens causing meningitis were
    Interpretation: The incidence of bacterial meningitis has remained stable. The high CFR highlights a need for prevention through vaccination.
    Funding: PHE.
    Language English
    Publishing date 2023-07-25
    Publishing country England
    Document type Journal Article
    ISSN 2666-7762
    ISSN (online) 2666-7762
    DOI 10.1016/j.lanepe.2023.100692
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Effectiveness of BNT162b2 and ChAdOx-1 vaccines in residents of long-term care facilities in England using a time-varying proportional hazards model.

    Paranthaman, Karthik / Subbarao, Sathyavani / Andrews, Nick / Kirsebom, Freja / Gower, Charlotte / Lopez-Bernal, Jamie / Ramsay, Mary / Copas, Andrew

    Age and ageing

    2022  Volume 51, Issue 5

    Abstract: Introduction: residents of long-term care facilities (LTCFs) are at high risk of adverse outcomes from SARS-CoV-2. We aimed to estimate the vaccine effectiveness (VE) of one and two doses of BNT162b2 and ChAdOx-1 against SARS CoV-2 infection and COVID- ... ...

    Abstract Introduction: residents of long-term care facilities (LTCFs) are at high risk of adverse outcomes from SARS-CoV-2. We aimed to estimate the vaccine effectiveness (VE) of one and two doses of BNT162b2 and ChAdOx-1 against SARS CoV-2 infection and COVID-19-related death in residents of LTCFs.
    Methods: this observational study used testing, vaccination and mortality data for LTCF residents aged ≥ 65 years who were regularly tested regardless of symptoms from 8 December 2020 to 30 September 2021 in England. Adjusted VE, calculated as one minus adjusted hazard ratio, was estimated using time-varying Cox proportional hazards models for infection and death within 28 days of positive test result. Vaccine status was defined by receipt of one or two doses of vaccine and assessed over a range of intervals.
    Results: of 197,885 LTCF residents, 47,087 (23.8%) had a positive test and 11,329 (5.8%) died within 28 days of a positive test during the study period. Relative to unvaccinated individuals, VE for infection was highest for ChAdOx-1 at 61% (40-74%) at 1-4 weeks and for BNT162b2 at 69% (52-80%) at 11-15 weeks following the second dose. Against death, VE was highest for ChAdOx-1 at 83% (58-94%) at 1-4 weeks and for BNT162b2 at 91% (75-97%) at 11-15 weeks following second dose.
    Conclusions: compared with unvaccinated residents, vaccination with one dose of BNT162b2 or ChAdOx-1 provided moderate protection against infection and death in residents of LTCFs. Protection against death improved after two doses. However, some waning of protection over time was noted.
    MeSH term(s) BNT162 Vaccine ; COVID-19/prevention & control ; COVID-19 Vaccines ; England/epidemiology ; Humans ; Long-Term Care ; Proportional Hazards Models ; SARS-CoV-2
    Chemical Substances COVID-19 Vaccines ; BNT162 Vaccine (N38TVC63NU)
    Language English
    Publishing date 2022-05-21
    Publishing country England
    Document type Journal Article ; Observational Study
    ZDB-ID 186788-x
    ISSN 1468-2834 ; 0002-0729
    ISSN (online) 1468-2834
    ISSN 0002-0729
    DOI 10.1093/ageing/afac115
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: National action plans for antimicrobial resistance and variations in surveillance data platforms.

    Pallett, Scott Jc / Charani, Esmita / Hawkins, Lois / Mazzella, Andrea / Anton-Vazquez, Vanesa / Banerjee, Rishi / Evans, Terry J / Patterson, Benjamin / Subbarao, Sathyavani / Alqahtani, Saleh / Basarab, Marina / Breathnach, Aodhan S / Mughal, Nabeela / Moore, Luke Sp

    Bulletin of the World Health Organization

    2023  Volume 101, Issue 8, Page(s) 501–512F

    Abstract: Objective: To assess how national antimicrobial susceptibility data used to inform national action plans vary across surveillance platforms.: Methods: We identified available open-access, supranational, interactive surveillance platforms and cross- ... ...

    Abstract Objective: To assess how national antimicrobial susceptibility data used to inform national action plans vary across surveillance platforms.
    Methods: We identified available open-access, supranational, interactive surveillance platforms and cross-checked their data in accordance with the World Health Organization's (WHO's) Data Quality Assurance: module 1. We compared platform usability and completeness of time-matched data on the antimicrobial susceptibilities of four blood isolate species:
    Findings: Of 71 countries actively submitting data to WHO, 28 also submit to Pfizer's database; 19 to ECDC; and 16 to all three platforms. Limits of agreement between WHO's and Pfizer's platforms for organism-country susceptibility data ranged from -26% to 35%. While mean susceptibilities of WHO's and ECDC's platforms did not differ (bias: 0%, 95% confidence interval: -2 to 2), concordance between organism-country susceptibility was low (limits of agreement -18% to 18%). Significant differences exist in isolate numbers reported between WHO-Pfizer (mean of difference: 674,
    Conclusion: The considerable heterogeneity of nationally submitted data to commonly used antimicrobial resistance surveillance platforms compromises their validity, thus undermining local and global antimicrobial resistance strategies. Hence, we need to understand and address surveillance platform variability and its underlying mechanisms.
    MeSH term(s) Humans ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Drug Resistance, Bacterial ; Microbial Sensitivity Tests ; Anti-Infective Agents
    Chemical Substances Anti-Bacterial Agents ; Anti-Infective Agents
    Language English
    Publishing date 2023-05-29
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 80213-x
    ISSN 1564-0604 ; 0042-9686 ; 0366-4996 ; 0510-8659
    ISSN (online) 1564-0604
    ISSN 0042-9686 ; 0366-4996 ; 0510-8659
    DOI 10.2471/BLT.22.289403
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Genetic and pharmacological inhibition of inflammasomes reduces the survival of Mycobacterium tuberculosis strains in macrophages.

    Subbarao, Sathyavani / Sanchez-Garrido, Julia / Krishnan, Nitya / Shenoy, Avinash R / Robertson, Brian D

    Scientific reports

    2020  Volume 10, Issue 1, Page(s) 3709

    Abstract: Mycobacterium tuberculosis infection causes high rates of morbidity and mortality. Host-directed therapy may enhance the immune response, reduce tissue damage and shorten treatment duration. The inflammasome is integral to innate immune responses but ... ...

    Abstract Mycobacterium tuberculosis infection causes high rates of morbidity and mortality. Host-directed therapy may enhance the immune response, reduce tissue damage and shorten treatment duration. The inflammasome is integral to innate immune responses but over-activation has been described in tuberculosis (TB) pathology and TB-immune reconstitution syndrome. Here we explore how clinical isolates differentially activate the inflammasome and how inflammasome inhibition can lead to enhanced bacterial clearance. Wild-type, Nlrp3
    MeSH term(s) Animals ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/immunology ; Furans ; Heterocyclic Compounds, 4 or More Rings/pharmacology ; Humans ; Indenes ; Inflammasomes/drug effects ; Inflammasomes/genetics ; Inflammasomes/immunology ; Interleukin-1beta/genetics ; Interleukin-1beta/immunology ; Macrophages/immunology ; Macrophages/microbiology ; Mice ; Mice, Inbred C57BL ; Mycobacterium tuberculosis/drug effects ; Mycobacterium tuberculosis/genetics ; Mycobacterium tuberculosis/growth & development ; NLR Family, Pyrin Domain-Containing 3 Protein/genetics ; NLR Family, Pyrin Domain-Containing 3 Protein/immunology ; Sulfonamides ; Sulfones/pharmacology ; Tuberculosis/genetics ; Tuberculosis/immunology ; Tuberculosis/microbiology
    Chemical Substances Aim2 protein, mouse ; DNA-Binding Proteins ; Furans ; Heterocyclic Compounds, 4 or More Rings ; Indenes ; Inflammasomes ; Interleukin-1beta ; NLR Family, Pyrin Domain-Containing 3 Protein ; Sulfonamides ; Sulfones ; N-(1,2,3,5,6,7-hexahydro-S-indacen-4-ylcarbamoyl)-4-(2-hydroxy-2-propanyl)-2-furansulfonamide (6RS86E2BWQ)
    Language English
    Publishing date 2020-02-28
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-020-60560-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Invasive Meningococcal Disease, 2011-2020, and Impact of the COVID-19 Pandemic, England.

    Subbarao, Sathyavani / Campbell, Helen / Ribeiro, Sonia / Clark, Stephen A / Lucidarme, Jay / Ramsay, Mary / Borrow, Ray / Ladhani, Shamez

    Emerging infectious diseases

    2021  Volume 27, Issue 9, Page(s) 2495–2497

    Abstract: Invasive meningococcal disease incidence in England declined from 1.93/100,000 persons (1,016 cases) in 2010-11 to 0.95/100,000 (530 cases) in 2018-19 and 0.74/100,000 in 2019-20 (419 cases). During national lockdown for the coronavirus disease pandemic ( ...

    Abstract Invasive meningococcal disease incidence in England declined from 1.93/100,000 persons (1,016 cases) in 2010-11 to 0.95/100,000 (530 cases) in 2018-19 and 0.74/100,000 in 2019-20 (419 cases). During national lockdown for the coronavirus disease pandemic (April-August 2020), incidence was 75% lower than during April-August 2019.
    MeSH term(s) COVID-19 ; Communicable Disease Control ; England/epidemiology ; Humans ; Meningococcal Infections/epidemiology ; Meningococcal Vaccines ; Neisseria meningitidis ; Pandemics ; SARS-CoV-2
    Chemical Substances Meningococcal Vaccines
    Language English
    Publishing date 2021-06-30
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1380686-5
    ISSN 1080-6059 ; 1080-6040
    ISSN (online) 1080-6059
    ISSN 1080-6040
    DOI 10.3201/eid2709.204866
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Journal ; Article ; Online: National action plans for antimicrobial resistance and variations in surveillance data platforms

    Pallett, Scott JC / Charani, Esmita / Hawkins, Lois / Mazzella, Andrea / Anton-Vazquez, Vanesa / Banerjee, Rishi / Evans, Terry J / Patterson, Benjamin / Subbarao, Sathyavani / Alqahtani, Saleh / Basarab, Marina / Breathnach, Aodhan S / Mughal, Nabeela / Moore, Luke SP

    2023  

    Abstract: ... 501 ... ...

    Abstract 501

    512F
    Keywords Research
    Publisher World Health Organization
    Document type Journal ; Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Author Correction: Serological responses and vaccine effectiveness for extended COVID-19 vaccine schedules in England.

    Amirthalingam, Gayatri / Bernal, Jamie Lopez / Andrews, Nick J / Whitaker, Heather / Gower, Charlotte / Stowe, Julia / Tessier, Elise / Subbarao, Sathyavani / Ireland, Georgina / Baawuah, Frances / Linley, Ezra / Warrener, Lenesha / O'Brien, Michelle / Whillock, Corinne / Moss, Paul / Ladhani, Shamez N / Brown, Kevin E / Ramsay, Mary E

    Nature communications

    2022  Volume 13, Issue 1, Page(s) 733

    Language English
    Publishing date 2022-02-02
    Publishing country England
    Document type Published Erratum
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-022-28393-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Robust antibody responses in 70-80-year-olds 3 weeks after the first or second doses of Pfizer/BioNTech COVID-19 vaccine, United Kingdom, January to February 2021.

    Subbarao, Sathyavani / Warrener, Lenesha A / Hoschler, Katja / Perry, Keith R / Shute, Justin / Whitaker, Heather / O'Brien, Michelle / Baawuah, Frances / Moss, Paul / Parry, Helen / Ladhani, Shamez N / Ramsay, Mary E / Brown, Kevin E / Amirthalingam, Gayatri

    Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin

    2021  Volume 26, Issue 12

    Abstract: Sera were collected from 185 adults aged ≥ 70 years in London to evaluate the immune response to COVID-19 vaccines. A single dose of Pfizer/BioNtech vaccine resulted in > 94% seropositivity after 3 weeks in naïve individuals using the Roche Spike ... ...

    Abstract Sera were collected from 185 adults aged ≥ 70 years in London to evaluate the immune response to COVID-19 vaccines. A single dose of Pfizer/BioNtech vaccine resulted in > 94% seropositivity after 3 weeks in naïve individuals using the Roche Spike antibody assay, while two doses produced very high spike antibody levels, significantly higher than convalescent sera from mild-to-moderate PCR-confirmed adult cases. Our findings support the United Kingdom's approach of prioritising the first dose and delaying the second dose of COVID-19 vaccine.
    MeSH term(s) Aged ; Aged, 80 and over ; Antibodies, Viral/blood ; Antibody Formation ; COVID-19/prevention & control ; COVID-19 Vaccines/immunology ; Humans ; London
    Chemical Substances Antibodies, Viral ; COVID-19 Vaccines
    Language English
    Publishing date 2021-03-26
    Publishing country Sweden
    Document type Journal Article
    ZDB-ID 1338803-4
    ISSN 1560-7917 ; 1025-496X
    ISSN (online) 1560-7917
    ISSN 1025-496X
    DOI 10.2807/1560-7917.ES.2021.26.12.2100329
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Vaccine effectiveness of the first dose of ChAdOx1 nCoV-19 and BNT162b2 against SARS-CoV-2 infection in residents of long-term care facilities in England (VIVALDI): a prospective cohort study.

    Shrotri, Madhumita / Krutikov, Maria / Palmer, Tom / Giddings, Rebecca / Azmi, Borscha / Subbarao, Sathyavani / Fuller, Christopher / Irwin-Singer, Aidan / Davies, Daniel / Tut, Gokhan / Lopez Bernal, Jamie / Moss, Paul / Hayward, Andrew / Copas, Andrew / Shallcross, Laura

    The Lancet. Infectious diseases

    2021  Volume 21, Issue 11, Page(s) 1529–1538

    Abstract: Background: The effectiveness of SARS-CoV-2 vaccines in older adults living in long-term care facilities is uncertain. We investigated the protective effect of the first dose of the Oxford-AstraZeneca non-replicating viral-vectored vaccine (ChAdOx1 nCoV- ...

    Abstract Background: The effectiveness of SARS-CoV-2 vaccines in older adults living in long-term care facilities is uncertain. We investigated the protective effect of the first dose of the Oxford-AstraZeneca non-replicating viral-vectored vaccine (ChAdOx1 nCoV-19; AZD1222) and the Pfizer-BioNTech mRNA-based vaccine (BNT162b2) in residents of long-term care facilities in terms of PCR-confirmed SARS-CoV-2 infection over time since vaccination.
    Methods: The VIVALDI study is a prospective cohort study that commenced recruitment on June 11, 2020, to investigate SARS-CoV-2 transmission, infection outcomes, and immunity in residents and staff in long-term care facilities in England that provide residential or nursing care for adults aged 65 years and older. In this cohort study, we included long-term care facility residents undergoing routine asymptomatic SARS-CoV-2 testing between Dec 8, 2020 (the date the vaccine was first deployed in a long-term care facility), and March 15, 2021, using national testing data linked within the COVID-19 Datastore. Using Cox proportional hazards regression, we estimated the relative hazard of PCR-positive infection at 0-6 days, 7-13 days, 14-20 days, 21-27 days, 28-34 days, 35-48 days, and 49 days and beyond after vaccination, comparing unvaccinated and vaccinated person-time from the same cohort of residents, adjusting for age, sex, previous infection, local SARS-CoV-2 incidence, long-term care facility bed capacity, and clustering by long-term care facility. We also compared mean PCR cycle threshold (Ct) values for positive swabs obtained before and after vaccination. The study is registered with ISRCTN, number 14447421.
    Findings: 10 412 care home residents aged 65 years and older from 310 LTCFs were included in this analysis. The median participant age was 86 years (IQR 80-91), 7247 (69·6%) of 10 412 residents were female, and 1155 residents (11·1%) had evidence of previous SARS-CoV-2 infection. 9160 (88·0%) residents received at least one vaccine dose, of whom 6138 (67·0%) received ChAdOx1 and 3022 (33·0%) received BNT162b2. Between Dec 8, 2020, and March 15, 2021, there were 36 352 PCR results in 670 628 person-days, and 1335 PCR-positive infections (713 in unvaccinated residents and 612 in vaccinated residents) were included. Adjusted hazard ratios (HRs) for PCR-positive infection relative to unvaccinated residents declined from 28 days after the first vaccine dose to 0·44 (95% CI 0·24-0·81) at 28-34 days and 0·38 (0·19-0·77) at 35-48 days. Similar effect sizes were seen for ChAdOx1 (adjusted HR 0·32, 95% CI 0·15-0·66) and BNT162b2 (0·35, 0·17-0·71) vaccines at 35-48 days. Mean PCR Ct values were higher for infections that occurred at least 28 days after vaccination than for those occurring before vaccination (31·3 [SD 8·7] in 107 PCR-positive tests vs 26·6 [6·6] in 552 PCR-positive tests; p<0·0001).
    Interpretation: Single-dose vaccination with BNT162b2 and ChAdOx1 vaccines provides substantial protection against infection in older adults from 4-7 weeks after vaccination and might reduce SARS-CoV-2 transmission. However, the risk of infection is not eliminated, highlighting the ongoing need for non-pharmaceutical interventions to prevent transmission in long-term care facilities.
    Funding: UK Government Department of Health and Social Care.
    MeSH term(s) Age Factors ; Aged ; Aged, 80 and over ; BNT162 Vaccine ; COVID-19/diagnosis ; COVID-19/epidemiology ; COVID-19/prevention & control ; COVID-19/virology ; COVID-19 Nucleic Acid Testing/statistics & numerical data ; COVID-19 Vaccines/administration & dosage ; COVID-19 Vaccines/immunology ; ChAdOx1 nCoV-19 ; England/epidemiology ; Female ; Humans ; Immunization Schedule ; Immunogenicity, Vaccine ; Incidence ; Male ; Mass Vaccination/methods ; Mass Vaccination/statistics & numerical data ; Nursing Homes/statistics & numerical data ; Prospective Studies ; SARS-CoV-2/genetics ; SARS-CoV-2/immunology ; SARS-CoV-2/isolation & purification ; Treatment Outcome
    Chemical Substances COVID-19 Vaccines ; ChAdOx1 nCoV-19 (B5S3K2V0G8) ; BNT162 Vaccine (N38TVC63NU)
    Language English
    Publishing date 2021-06-23
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2061641-7
    ISSN 1474-4457 ; 1473-3099
    ISSN (online) 1474-4457
    ISSN 1473-3099
    DOI 10.1016/S1473-3099(21)00289-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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