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  1. Article: NTRK-Rearranged soft tissue neoplasms: A review of evolving diagnostic entities and algorithmic detection methods.

    Surrey, Lea F / Davis, Jessica L

    Cancer genetics

    2021  Volume 260-261, Page(s) 6–13

    Abstract: The spectrum of tumors with NTRK1/2/3 rearrangements has expanded with widespread use of next generation sequencing (NGS) technology. For many years it was known that a majority of infantile fibrosarcomas (IFS), and their counterpart in the kidney, ... ...

    Abstract The spectrum of tumors with NTRK1/2/3 rearrangements has expanded with widespread use of next generation sequencing (NGS) technology. For many years it was known that a majority of infantile fibrosarcomas (IFS), and their counterpart in the kidney, cellular congenital mesoblastic nephroma, contain the recurrent ETV6-NTRK3 fusion. Sequencing RNA transcripts from IFS and their morphologically similar counterparts in older children and adults has shown rearrangements with other 5' partners combined with NTRK1, NTRK2, and NTRK3 can also occur. For those tumors occurring outside of the infant age group, this has resulted in a proposed new diagnostic entity of "NTRK-rearranged spindle cell neoplasm." The clinical behavior of NTRK rearranged soft tissue tumors varies, though most show localized disease with rare metastases. The pathology of NTRK rearranged tumors exists on a spectrum, with overlapping features of classic infantile fibrosarcoma, lipofibromatosis, and malignant peripheral nerve sheath tumor. In this tumor spectrum, clinical and pathologic predictive factors are largely still to be determined, with no clear association between histologic grade and severity of disease. Of critical importance is detection of the NTRK rearrangement in order to guide treatment in patients with unresectable and metastatic disease. While resection is the definitive treatment, these tumors do show response to targeted TRK kinase inhibitors. Multiple detection methods are available, including immunohistochemistry, FISH, and next generation sequencing, which each have their merits and potential pitfalls. We aim to review the clinical characteristics and histomorphology of mesenchymal tumors with NTRK rearrangements as well as discuss molecular detection methods and diagnostic algorithms specific for soft tissue tumors.
    MeSH term(s) Adult ; Child ; High-Throughput Nucleotide Sequencing ; Humans ; In Situ Hybridization, Fluorescence ; Membrane Glycoproteins/genetics ; Neoplasm Grading ; Oncogene Proteins, Fusion/genetics ; Precision Medicine ; Receptor, trkA/genetics ; Receptor, trkB/genetics ; Receptor, trkC/genetics ; Sequence Analysis, RNA ; Soft Tissue Neoplasms/genetics ; Soft Tissue Neoplasms/pathology ; Translocation, Genetic
    Chemical Substances Membrane Glycoproteins ; NTRK1 protein, human ; NTRK3 protein, human ; Oncogene Proteins, Fusion ; Receptor, trkA (EC 2.7.10.1) ; Receptor, trkB (EC 2.7.10.1) ; Receptor, trkC (EC 2.7.10.1) ; tropomyosin-related kinase-B, human (EC 2.7.10.1)
    Language English
    Publishing date 2021-11-03
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2599227-2
    ISSN 2210-7762
    ISSN 2210-7762
    DOI 10.1016/j.cancergen.2021.10.007
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Hepatocellular Adenoma in an Infant With Burn-McKeown Syndrome: Report of a Case.

    González, Iván A / Surrey, Lea F / Russo, Pierre

    Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society

    2022  Volume 25, Issue 6, Page(s) 668–671

    Abstract: Hepatocellular adenomas (HCA) in infants are exceedingly rare with only 5 cases reported to the best of our knowledge, all of them preceding the classification of HCA. Here we present an autopsy case of a 9-month-old girl with Burn-McKeown syndrome with ... ...

    Abstract Hepatocellular adenomas (HCA) in infants are exceedingly rare with only 5 cases reported to the best of our knowledge, all of them preceding the classification of HCA. Here we present an autopsy case of a 9-month-old girl with Burn-McKeown syndrome with an incidental liver nodule in the right lobe measuring 1.5 cm in greatest dimension. The lesion was composed of an unencapsulated proliferation of hepatocytes with multiple unaccompanied arteries without well-formed portal tracts, and an intact reticulin framework without thickened hepatic plates, findings consistent with an HCA. Glutamine synthetase (GS), lipid fatty acid-binding protein (LFABP), c-reactive protein (CRP), serum amyloid-a (SAA), beta-catenin and CD34 immunostains were performed. GS was diffusely and strongly positive in the lesion, CD34 showed heterogenous staining of sinusoids within the lesion without a well-formed rim from the background liver and beta-catenin was negative for nuclear staining. CRP and SAA were considered negative, and LFABP was retained. Molecular testing showed no
    Language English
    Publishing date 2022-10-19
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1463498-3
    ISSN 1615-5742 ; 1093-5266
    ISSN (online) 1615-5742
    ISSN 1093-5266
    DOI 10.1177/10935266221109468
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Dorsal Medial Cuneiform Bony Outgrowth-Apophysis or Exostosis: A Case Report.

    Malige, Ajith / Surrey, Lea F / Davidson, Richard

    JBJS case connector

    2021  Volume 11, Issue 1, Page(s) e20.00194

    Abstract: Case: Three female children (11-15 years) presented with painful dorsomedial medial cuneiform masses that did not improve after conservative treatment. Findings were consistent with a diagnosis of medial cuneiform apophysis. After surgical resection, no ...

    Abstract Case: Three female children (11-15 years) presented with painful dorsomedial medial cuneiform masses that did not improve after conservative treatment. Findings were consistent with a diagnosis of medial cuneiform apophysis. After surgical resection, no patients had recurrence, although one continued to have pain from a deep peroneal nerve sensory branch that was resected. One patient had an intramass physis identified.
    Conclusion: When surgically removing dorsomedial cuneiform masses, surgeons should decompress overlying sensory nerve branches, detach and subsequently repair muscular attachments, and remove the entire stump to prevent regrowth because some of these masses may be apophyses and not exostoses.
    MeSH term(s) Bone Neoplasms/complications ; Child ; Exostoses/complications ; Exostoses/surgery ; Female ; Humans ; Osteochondroma ; Pain/etiology ; Tarsal Bones/diagnostic imaging ; Tarsal Bones/surgery
    Language English
    Publishing date 2021-02-11
    Publishing country United States
    Document type Case Reports ; Journal Article
    ISSN 2160-3251
    ISSN (online) 2160-3251
    DOI 10.2106/JBJS.CC.20.00194
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: The Incidence of Multiple Fusions in a Series of Pediatric Soft Tissue and Bone Tumors.

    MacKeracher, Anastasia / Arnoldo, Anthony / Siddaway, Robert / Surrey, Lea F / Somers, Gino R

    Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society

    2023  Volume 27, Issue 1, Page(s) 3–12

    Abstract: Background: Next generation sequencing (NGS) has increased the detection of fusion genes in cancer. NGS has found multiple fusions in single tumor samples; however, the incidence of this in pediatric soft tissue and bone tumors (PSTBTs) is not well ... ...

    Abstract Background: Next generation sequencing (NGS) has increased the detection of fusion genes in cancer. NGS has found multiple fusions in single tumor samples; however, the incidence of this in pediatric soft tissue and bone tumors (PSTBTs) is not well documented. The aim of this study is to catalogue the incidence of multiple fusions in a series of PSTBTs, and apply a modified gene fusion classification system to determine clinical relevance.
    Methodology: RNA from 78 bone and soft tissue tumors and 7 external quality assessment samples were sequenced and analyzed using recently-described Metafusion (MF) software and classified using a modification of previously-published schema for fusion classification into 3 tiers: 1, strong clinical significance; 2, potential clinical significance; and 3, unknown clinical significance.
    Results: One-hundred forty-five fusions were detected in 85 samples. Fifty-five samples (65%) had a single fusion and 30 (35%) had more than 1 fusion. No samples contained more than 1 tier 1 fusion. There were 40 tier 1 (28%), 36 tier 2 (24%), and 69 (48%) tier 3 fusions.
    Conclusions: A significant percentage of PSTBTs harbor more than 1 fusion, and by applying a modified fusion classification scheme, the potential clinical relevance of such fusions can be determined.
    MeSH term(s) Humans ; Child ; Incidence ; Bone Neoplasms/genetics ; Soft Tissue Neoplasms/genetics ; Gene Fusion ; Base Sequence ; High-Throughput Nucleotide Sequencing ; Oncogene Proteins, Fusion/genetics
    Chemical Substances Oncogene Proteins, Fusion
    Language English
    Publishing date 2023-09-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1463498-3
    ISSN 1615-5742 ; 1093-5266
    ISSN (online) 1615-5742
    ISSN 1093-5266
    DOI 10.1177/10935266231199928
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Anterior Mediastinal Neuroblastoma Associated with Syndrome of Inappropriate Antidiuretic Hormone Secretion: A Morphologic, Immunohistochemical, and Genetic Case Report and Review of the Literature.

    Kennedy, Gregory T / Sande, Christopher M / Surrey, Lea F / Azari, Feredun S / Deshpande, Charuhas / Singhal, Sunil

    International journal of surgical pathology

    2022  Volume 30, Issue 6, Page(s) 689–696

    Abstract: We report a mediastinal neuroblastoma in an octogenarian with paraneoplastic syndrome of inappropriate antidiuretic hormone secretion (SIADH). Neuroblastomas are very rare tumors in adults, with thoracic or mediastinal locations being especially uncommon. ...

    Abstract We report a mediastinal neuroblastoma in an octogenarian with paraneoplastic syndrome of inappropriate antidiuretic hormone secretion (SIADH). Neuroblastomas are very rare tumors in adults, with thoracic or mediastinal locations being especially uncommon. These neoplasms have been occasionally associated with the SIADH. Given the rarity of incidence and paucity of diagnostic and outcomes data, the significance of standard neuroblastoma prognostic characteristics is unclear, and no treatment paradigms exist for these patients. Further studies are needed to inform future clinical guidelines.
    MeSH term(s) Adult ; Aged, 80 and over ; Humans ; Inappropriate ADH Syndrome/complications ; Inappropriate ADH Syndrome/diagnosis ; Mediastinal Neoplasms/complications ; Neuroblastoma/complications ; Neuroblastoma/diagnosis ; Vasopressins/therapeutic use
    Chemical Substances Vasopressins (11000-17-2)
    Language English
    Publishing date 2022-02-21
    Publishing country United States
    Document type Case Reports ; Journal Article ; Review
    ZDB-ID 1336393-1
    ISSN 1940-2465 ; 1066-8969
    ISSN (online) 1940-2465
    ISSN 1066-8969
    DOI 10.1177/10668969221080061
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Molecular identification of an ETV6-RET fusion in a secretory carcinoma associated with a pleomorphic adenoma.

    Smith, Maria E / Surrey, Lea F / Zhang, Paul J / Weinstein, Gregory S / LiVolsi, Virginia A

    Oral surgery, oral medicine, oral pathology and oral radiology

    2022  Volume 134, Issue 6, Page(s) 733–738

    Abstract: Pleomorphic adenoma (PA) is the most common neoplasm of the salivary glands. Although several carcinomas have been reported to arise from PA, only 1 case of salivary gland secretory carcinoma (SC) ex pleomorphic adenoma has been previously reported. SC ... ...

    Abstract Pleomorphic adenoma (PA) is the most common neoplasm of the salivary glands. Although several carcinomas have been reported to arise from PA, only 1 case of salivary gland secretory carcinoma (SC) ex pleomorphic adenoma has been previously reported. SC is a newly described salivary gland tumor harboring an ETV6-NTRK3 translocation, which is classically observed in secretory carcinoma of the breast, although other translocations have recently been observed. We report the first case of the molecular identification of a rare ETV6-RET translocation in an SC arising from a PA in the submandibular salivary gland (SC ex PA). Our results add to the diversity of tumors that are associated with PA and contribute to the molecular characterization of SC, which will have implications on its diagnosis, prognosis, and treatment.
    MeSH term(s) Humans ; Adenoma, Pleomorphic/genetics ; Adenoma, Pleomorphic/surgery ; Carcinoma ; Proto-Oncogene Proteins c-ret
    Chemical Substances Proto-Oncogene Proteins c-ret (EC 2.7.10.1) ; RET protein, human (EC 2.7.10.1) ; ETV6-RET fusion protein, human
    Language English
    Publishing date 2022-04-21
    Publishing country United States
    Document type Case Reports ; Research Support, Non-U.S. Gov't
    ZDB-ID 2650843-6
    ISSN 2212-4411 ; 2212-4403
    ISSN (online) 2212-4411
    ISSN 2212-4403
    DOI 10.1016/j.oooo.2022.04.043
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Mesenchymal neoplasms with NTRK and other kinase gene alterations.

    Davis, Jessica L / Al-Ibraheemi, Alyaa / Rudzinski, Erin R / Surrey, Lea F

    Histopathology

    2021  Volume 80, Issue 1, Page(s) 4–18

    Abstract: Kinase alterations are increasingly recognised as oncogenic drivers in mesenchymal tumours. Infantile fibrosarcoma and the related renal tumour, congenital mesoblastic nephroma, were among the first solid tumours shown to harbour recurrent tyrosine ... ...

    Abstract Kinase alterations are increasingly recognised as oncogenic drivers in mesenchymal tumours. Infantile fibrosarcoma and the related renal tumour, congenital mesoblastic nephroma, were among the first solid tumours shown to harbour recurrent tyrosine kinase fusions, with the canonical ETV6::NTRK3 fusion identified more than 20 years ago. Although targeted testing has long been used in diagnosis, the advent of more robust sequencing techniques has driven the discovery of kinase alterations in an array of mesenchymal tumours. As our ability to identify these genetic alterations has improved, as has our recognition and understanding of the tumours that harbour these alterations. Specifically, this study will focus upon mesenchymal tumours harbouring NTRK or other kinase alterations, including tumours with an infantile fibrosarcoma-like appearance, spindle cell tumours resembling lipofibromatosis or peripheral nerve sheath tumours and those occurring in adults with a fibrosarcoma-like appearance. As publications describing the histology of these tumours increase so, too, do the variety kinase alterations reported, now including NTRK1/2/3, RET, MET, RAF1, BRAF, ALK, EGFR and ABL1 fusions or alterations. To date, these tumours appear locally aggressive and rarely metastatic, without a clear link between traditional features used in histological grading (e.g. mitotic activity, necrosis) and outcome. However, most of these tumours are amenable to new targeted therapies, making their recognition of both diagnostic and therapeutic import. The goal of this study is to review the clinicopathological features of tumours with NTRK and other tyrosine kinase alterations, discuss the most common differential diagnoses and provide recommendations for molecular confirmation with associated treatment implications.
    MeSH term(s) Fibrosarcoma/genetics ; Fibrosarcoma/pathology ; Gene Rearrangement ; Humans ; Neoplasm Recurrence, Local/genetics ; Neoplasm Recurrence, Local/pathology ; Neoplasms, Connective and Soft Tissue/genetics ; Neoplasms, Connective and Soft Tissue/pathology ; Nephroma, Mesoblastic/genetics ; Nephroma, Mesoblastic/pathology ; Receptor, trkA/genetics
    Chemical Substances NTRK1 protein, human ; Receptor, trkA (EC 2.7.10.1)
    Language English
    Publishing date 2021-12-26
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 131914-0
    ISSN 1365-2559 ; 0309-0167
    ISSN (online) 1365-2559
    ISSN 0309-0167
    DOI 10.1111/his.14443
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  8. Article ; Online: Alternative Evaluation of the Right Axillary Lymphatic Pathway by Using Dynamic Contrast-enhanced MR Lymphangiography.

    Simon, Michael / Dori, Yoav / Smith, Christopher L / Biko, David M / Surrey, Lea F / Adams, Denise M / Krishnamurthy, Ganesh / Rapp, Jordan B

    Radiology. Cardiothoracic imaging

    2022  Volume 4, Issue 5, Page(s) e220035

    Abstract: The lymphatic system plays an integral part in fluid homeostasis. Disturbances in lymphatic pathways are congenital, posttraumatic, or posttreatment related, such as after Fontan palliation. Lymphatic pathway evaluation is challenging because of the ... ...

    Abstract The lymphatic system plays an integral part in fluid homeostasis. Disturbances in lymphatic pathways are congenital, posttraumatic, or posttreatment related, such as after Fontan palliation. Lymphatic pathway evaluation is challenging because of the difficulty in introducing contrast material into the lymphatics. Intranodal, intramesenteric, and intrahepatic dynamic contrast-enhanced MR lymphangiography (DCMRL) offer better visualization of major lymphatic pathways. However, these techniques exclude pathways outside the central conduction system, preventing the visualization of abnormalities and, thus, administration of treatment. The authors describe alternative imaging of an axillary pathway via DCMRL in a patient with a symptomatic chylous effusion not previously assessed with current techniques.
    Language English
    Publishing date 2022-10-27
    Publishing country United States
    Document type Case Reports
    ISSN 2638-6135
    ISSN (online) 2638-6135
    DOI 10.1148/ryct.220035
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  9. Article ; Online: S100 and CD34 Expressing Mesenchymal Neoplasm With Rare PLEKHH2::ALK Fusion and Response to ALK Inhibition.

    Coppock, Joseph D / Schneider, Michael A / Surrey, Lea F / Karakousis, Giorgos C / Maki, Robert G / Cooper, Kumarasen

    The American journal of surgical pathology

    2022  Volume 46, Issue 9, Page(s) 1309–1313

    Abstract: The PLEKHH2::ALK fusion is a rarely reported gene fusion identified predominantly in lung adenocarcinomas. Tumors with this fusion have been reported to be of durable response to ALK inhibitors. We herein present the case of a 21-year-old woman with a ... ...

    Abstract The PLEKHH2::ALK fusion is a rarely reported gene fusion identified predominantly in lung adenocarcinomas. Tumors with this fusion have been reported to be of durable response to ALK inhibitors. We herein present the case of a 21-year-old woman with a histomorphologically heterogenous mesenchymal neoplasm of the pelvis, expressing both s100 and CD34, with subsequently identified PLEKHH2::ALK fusion. To our knowledge, only a single mesenchymal neoplasm with this gene fusion has been previously reported. We propose that this tumor represents one with a novel ALK fusion in the emerging family of s100 and CD34 expressing mesenchymal neoplasms with oncogenic kinase alterations akin to NTRK -rearranged mesenchymal neoplasms, rather than inflammatory myofibroblastic tumor. Importantly, this tumor demonstrated a significant response to the ALK inhibitor brigatinib.
    MeSH term(s) Adenocarcinoma of Lung ; Adult ; Cytoskeletal Proteins/genetics ; Female ; Gene Fusion ; Humans ; Lung Neoplasms/pathology ; Neoplasms, Connective and Soft Tissue ; Oncogene Proteins, Fusion/genetics ; Protein Kinase Inhibitors/therapeutic use ; Receptor Protein-Tyrosine Kinases/genetics ; S100 Proteins ; Young Adult
    Chemical Substances Cytoskeletal Proteins ; Oncogene Proteins, Fusion ; Protein Kinase Inhibitors ; S100 Proteins ; plekhh2 protein, human ; Receptor Protein-Tyrosine Kinases (EC 2.7.10.1)
    Language English
    Publishing date 2022-03-15
    Publishing country United States
    Document type Case Reports ; Journal Article
    ZDB-ID 752964-8
    ISSN 1532-0979 ; 0147-5185
    ISSN (online) 1532-0979
    ISSN 0147-5185
    DOI 10.1097/PAS.0000000000001887
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  10. Article ; Online: Novel PPP1CB-ALK fusion in spindle cell tumor defined by S100 and CD34 coexpression and distinctive stromal and perivascular hyalinization.

    Lopez-Nunez, Oscar / Surrey, Lea F / Alaggio, Rita / Fritchie, Karen J / John, Ivy

    Genes, chromosomes & cancer

    2020  Volume 59, Issue 8, Page(s) 495–499

    Abstract: A novel group of S100- and CD34-positive spindle cell tumors with distinctive stromal and perivascular hyalinization harboring recurrent gene fusions involving kinases including RAF1, BRAF, NTRK1/2/3, and RET have been recently reported. To our knowledge, ...

    Abstract A novel group of S100- and CD34-positive spindle cell tumors with distinctive stromal and perivascular hyalinization harboring recurrent gene fusions involving kinases including RAF1, BRAF, NTRK1/2/3, and RET have been recently reported. To our knowledge, no such cases harboring ALK rearrangements have been identified. We report a previously healthy 41-year-old male with a 12-cm intramuscular shoulder mass. The tumor was composed of bland-appearing spindled to epithelioid cells, arranged in a patternless pattern in a background of loose myxoid stroma containing striking amianthoid-like stromal collagen and perivascular rings. In accordance with the previously reported tumors, the tumor cells showed diffuse immunopositivity with S100 and CD34, while lacking SOX10 expression. Targeted RNA-based next-generation sequencing identified a novel serine/threonine-protein phosphatase PP1-beta-catalytic subunit (PPP1CB)-ALK fusion gene. Although ALK break-apart was not detected by FISH, likely due to a paracentric inversion of chromosome 2, the presence of the fusion was confirmed by Sanger sequencing showing a 10-bp linker between exon 6 of PPP1CB and intron 19 of ALK while maintaining reading frame. Subsequent ALK-1 immunostain exhibited diffuse cytoplasmic staining in the tumor cells. Our case expands the molecular genetic spectrum of the distinctive group of spindle cell tumors with CD34/S100+ immunophenotype, supporting the important role of various kinases as drivers of oncogenesis. Awareness of this entity including its unique morphologic and immunophenotypic features as well as its interchangeable kinase gene fusions is crucial for correct classification and potential targeted therapy, particularly in aggressive subsets.
    MeSH term(s) Adult ; Anaplastic Lymphoma Kinase/genetics ; Antigens, CD34/genetics ; Antigens, CD34/metabolism ; Blood Vessels/pathology ; Humans ; Male ; Oncogene Proteins, Fusion/genetics ; Perivascular Epithelioid Cell Neoplasms/genetics ; Perivascular Epithelioid Cell Neoplasms/pathology ; Protein Phosphatase 1/genetics ; S100 Proteins/genetics ; S100 Proteins/metabolism ; Shoulder/pathology ; Stromal Cells/pathology
    Chemical Substances Antigens, CD34 ; Oncogene Proteins, Fusion ; S100 Proteins ; ALK protein, human (EC 2.7.10.1) ; Anaplastic Lymphoma Kinase (EC 2.7.10.1) ; PPP1CB protein, human (EC 3.1.3.16) ; Protein Phosphatase 1 (EC 3.1.3.16)
    Language English
    Publishing date 2020-04-04
    Publishing country United States
    Document type Case Reports ; Journal Article
    ZDB-ID 1018988-9
    ISSN 1098-2264 ; 1045-2257
    ISSN (online) 1098-2264
    ISSN 1045-2257
    DOI 10.1002/gcc.22844
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