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  1. Article ; Online: ASO Author Reflections: The Impact of DCIS on Positive Margin Rates.

    Chauhan, Hemali / Ashrafian, Hutan / Takats, Zoltan / Leff, Daniel Richard

    Annals of surgical oncology

    2024  Volume 31, Issue 6, Page(s) 3948–3949

    MeSH term(s) Humans ; Breast Neoplasms/pathology ; Female ; Carcinoma, Intraductal, Noninfiltrating/pathology ; Carcinoma, Intraductal, Noninfiltrating/surgery ; Margins of Excision ; Prognosis ; Mastectomy, Segmental/methods
    Language English
    Publishing date 2024-03-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1200469-8
    ISSN 1534-4681 ; 1068-9265
    ISSN (online) 1534-4681
    ISSN 1068-9265
    DOI 10.1245/s10434-024-15217-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Human robotic surgery with intraoperative tissue identification using rapid evaporation ionisation mass spectrometry.

    Manoli, Eftychios / Higginson, James / Tolley, Neil / Darzi, Ara / Kinross, James / Temelkuran, Burak / Takats, Zoltan

    Scientific reports

    2024  Volume 14, Issue 1, Page(s) 1027

    Abstract: Instantaneous, continuous, and reliable information on the molecular biology of surgical target tissue could significantly contribute to the precision, safety, and speed of the intervention. In this work, we introduced a methodology for chemical tissue ... ...

    Abstract Instantaneous, continuous, and reliable information on the molecular biology of surgical target tissue could significantly contribute to the precision, safety, and speed of the intervention. In this work, we introduced a methodology for chemical tissue identification in robotic surgery using rapid evaporative ionisation mass spectrometry. We developed a surgical aerosol evacuation system that is compatible with a robotic platform enabling consistent intraoperative sample collection and assessed the feasibility of this platform during head and neck surgical cases, using two different surgical energy devices. Our data showed specific, characteristic lipid profiles associated with the tissue type including various ceramides, glycerophospholipids, and glycerolipids, as well as different ion formation mechanisms based on the energy device used. This platform allows continuous and accurate intraoperative mass spectrometry-based identification of ablated/resected tissue and in combination with robotic registration of images, time, and anatomical positions can improve the current robot-assisted surgical platforms and guide surgical strategy.
    MeSH term(s) Humans ; Robotic Surgical Procedures ; Physical Phenomena ; Robotics ; Ceramides ; Mass Spectrometry
    Chemical Substances Ceramides
    Language English
    Publishing date 2024-01-10
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-50942-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Laser desorption rapid evaporative ionization mass spectrometry (LD-REIMS) demonstrates a direct impact of hypochlorous acid stress on PQS-mediated quorum sensing in

    Bradley, Rob / Simon, Daniel / Spiga, Livia / Xiang, Yuchen / Takats, Zoltan / Williams, Huw

    mSystems

    2024  Volume 9, Issue 4, Page(s) e0116523

    Abstract: To establish infections in human hosts, : Importance: This work demonstrates that a high-throughput ambient ionization mass spectrometry method can be used successfully to study a bacterial stress response. Its application to the opportunistic ... ...

    Abstract To establish infections in human hosts,
    Importance: This work demonstrates that a high-throughput ambient ionization mass spectrometry method can be used successfully to study a bacterial stress response. Its application to the opportunistic pathogen
    MeSH term(s) Humans ; Quorum Sensing ; Pseudomonas aeruginosa ; Hypochlorous Acid/metabolism ; Pyocyanine/metabolism ; Quinolones/analysis ; Virulence Factors/metabolism ; Mass Spectrometry ; Oxidants/metabolism ; Pancreatic Elastase/metabolism ; Biomarkers/metabolism ; Lasers
    Chemical Substances 2-heptyl-3-hydroxy-4-quinolone ; Hypochlorous Acid (712K4CDC10) ; Pyocyanine (9OQM399341) ; Quinolones ; Virulence Factors ; Oxidants ; Pancreatic Elastase (EC 3.4.21.36) ; Biomarkers
    Language English
    Publishing date 2024-03-26
    Publishing country United States
    Document type Journal Article
    ISSN 2379-5077
    ISSN (online) 2379-5077
    DOI 10.1128/msystems.01165-23
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Analysis of dried blood spot samples by high resolution mass spectrometry - from newborn screening to cancer diagnostics.

    Takats, Zoltan

    Clinical biochemistry

    2014  Volume 47, Issue 9, Page(s) 699

    MeSH term(s) Biomarkers, Tumor/blood ; Dried Blood Spot Testing ; Humans ; Infant, Newborn ; Metabolic Diseases/blood ; Metabolic Diseases/diagnosis ; Metabolome ; Neonatal Screening ; Neoplasms/blood ; Neoplasms/diagnosis ; Tandem Mass Spectrometry
    Chemical Substances Biomarkers, Tumor
    Language English
    Publishing date 2014-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 390372-2
    ISSN 1873-2933 ; 0009-9120
    ISSN (online) 1873-2933
    ISSN 0009-9120
    DOI 10.1016/j.clinbiochem.2014.05.014
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Enhancement of Ambient Mass Spectrometry Imaging Data by Image Restoration.

    Xiang, Yuchen / Metodiev, Martin / Wang, Meiqi / Cao, Boxuan / Bunch, Josephine / Takats, Zoltan

    Metabolites

    2023  Volume 13, Issue 5

    Abstract: Mass spectrometry imaging (MSI) has been a key driver of groundbreaking discoveries in a number of fields since its inception more than 50 years ago. Recently, MSI development trends have shifted towards ambient MSI (AMSI) as the removal of sample- ... ...

    Abstract Mass spectrometry imaging (MSI) has been a key driver of groundbreaking discoveries in a number of fields since its inception more than 50 years ago. Recently, MSI development trends have shifted towards ambient MSI (AMSI) as the removal of sample-preparation steps and the possibility of analysing biological specimens in their natural state have drawn the attention of multiple groups across the world. Nevertheless, the lack of spatial resolution has been cited as one of the main limitations of AMSI. While significant research effort has presented hardware solutions for improving the resolution, software solutions are often overlooked, although they can usually be applied in a cost-effective manner after image acquisition. In this vein, we present two computational methods that we have developed to directly enhance the image resolution post-acquisition. Robust and quantitative resolution improvement is demonstrated for 12 cases of openly accessible datasets across laboratories around the globe. Using the same universally applicable Fourier imaging model, we discuss the possibility of true super-resolution by software for future studies.
    Language English
    Publishing date 2023-05-19
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2662251-8
    ISSN 2218-1989
    ISSN 2218-1989
    DOI 10.3390/metabo13050669
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Utilization of bis-MPA Dendrimers for the Calibration of Ion Mobility Collision Cross Section Calculations.

    Sekera, Emily R / Somogyi, Árpád / Takáts, Zoltan / Stappert, Florian / Thom, Cedric / Schmitz, Oliver J / Moeckel, Claudia / Paizs, Béla / Sommertune, Jens

    Journal of the American Society for Mass Spectrometry

    2024  

    Abstract: Ion mobility-mass spectrometry (IM-MS) has become increasingly popular with the rapid expansion of available techniques and instrumentation. To enable accuracy, standardization, and repeatability of IM-MS measurements, the community requires reliable and ...

    Abstract Ion mobility-mass spectrometry (IM-MS) has become increasingly popular with the rapid expansion of available techniques and instrumentation. To enable accuracy, standardization, and repeatability of IM-MS measurements, the community requires reliable and well-defined reference materials for calibration and tuning of the equipment. To address this need, synthetic dendrimers of high chemical and structural purity were tested on three ion mobility platforms as potential calibrants. First, synthesized dendrimers were characterized by drift tube ion mobility (DTIMS), using an Agilent 6560 IM-qTOF-MS to assess their drift tube collision cross section (
    Language English
    Publishing date 2024-05-13
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1073671-2
    ISSN 1879-1123 ; 1044-0305
    ISSN (online) 1879-1123
    ISSN 1044-0305
    DOI 10.1021/jasms.3c00428
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Mass spectrometry approaches to metabolic profiling of microbial communities within the human gastrointestinal tract.

    Cameron, Simon J S / Takáts, Zoltán

    Methods (San Diego, Calif.)

    2018  Volume 149, Page(s) 13–24

    Abstract: The interaction between microbial communities and their environment, such as the human gastrointestinal tract, has been an area of microbiology rapidly advanced, by developments in sequencing technology. However, these techniques are largely limited to ... ...

    Abstract The interaction between microbial communities and their environment, such as the human gastrointestinal tract, has been an area of microbiology rapidly advanced, by developments in sequencing technology. However, these techniques are largely limited to the detection of the taxonomic composition of a microbial community and/or its genetic functional capacity. Here, we discuss a range of mass spectrometry-based approaches which researchers can employ to explore the host-microbiome interactions at the metabolic level. Traditional approaches to mass spectrometry are detailed, alongside new developments in the field, namely ambient ionisation mass spectrometry and imaging mass spectrometry, which we believe will prove to be important to future work in this field. We further discuss considerations for experimental workflows, data analysis options and propose a methodology for the establishment of causal relationships between functional host-microbiome interactions with regards to health and disease in the human gastrointestinal tract.
    MeSH term(s) Gastrointestinal Microbiome/physiology ; Gastrointestinal Tract/metabolism ; Gastrointestinal Tract/microbiology ; Humans ; Mass Spectrometry/methods ; Mass Spectrometry/trends ; Metabolome/physiology ; Metabolomics/methods ; Metabolomics/trends ; Microbiota/physiology ; Tandem Mass Spectrometry/methods ; Tandem Mass Spectrometry/trends
    Language English
    Publishing date 2018-04-26
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1066584-5
    ISSN 1095-9130 ; 1046-2023
    ISSN (online) 1095-9130
    ISSN 1046-2023
    DOI 10.1016/j.ymeth.2018.04.027
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: A Critical and Concise Review of Mass Spectrometry Applied to Imaging in Drug Discovery.

    Goodwin, Richard J A / Takats, Zoltan / Bunch, Josephine

    SLAS discovery : advancing life sciences R & D

    2020  Volume 25, Issue 9, Page(s) 963–976

    Abstract: During the past decade, mass spectrometry imaging (MSI) has become a robust and versatile methodology to support modern pharmaceutical research and development. The technologies provide data on the biodistribution, metabolism, and delivery of drugs in ... ...

    Abstract During the past decade, mass spectrometry imaging (MSI) has become a robust and versatile methodology to support modern pharmaceutical research and development. The technologies provide data on the biodistribution, metabolism, and delivery of drugs in tissues, while also providing molecular maps of endogenous metabolites, lipids, and proteins. This allows researchers to make both pharmacokinetic and pharmacodynamic measurements at cellular resolution in tissue sections or clinical biopsies. Despite drug imaging within samples now playing a vital role within research and development (R&D) in leading pharmaceutical companies, however, the challenges in turning compounds into medicines continue to evolve as rapidly as the technologies used to discover them. The increasing cost of development of new and emerging therapeutic modalities, along with the associated risks of late-stage program attrition, means there is still an unmet need in our ability to address an increasing array of challenging bioanalytical questions within drug discovery. We require new capabilities and strategies of integrated imaging to provide context for fundamental disease-related biological questions that can also offer insights into specific project challenges. Integrated molecular imaging and advanced image analysis have the opportunity to provide a world-class capability that can be deployed on projects in which we cannot answer the question with our battery of established assays. Therefore, here we will provide an updated concise review of the use of MSI for drug discovery; we will also critically consider what is required to embed MSI into a wider evolving R&D landscape and allow long-lasting impact in the industry.
    MeSH term(s) Drug Discovery ; Humans ; Image Processing, Computer-Assisted ; Molecular Imaging ; Pharmaceutical Preparations/isolation & purification ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ; Tissue Distribution/drug effects
    Chemical Substances Pharmaceutical Preparations
    Language English
    Publishing date 2020-07-25
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 2885123-7
    ISSN 2472-5560 ; 2472-5552
    ISSN (online) 2472-5560
    ISSN 2472-5552
    DOI 10.1177/2472555220941843
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: ASO Author Reflections: Diagnostic Accuracy of Nipple Aspirate Fluid Cytology in Asymptomatic Patients and Its Predictive Validity on Future Risk of Breast Cancer: A Meta-Analysis and Systematic Review of the Literature.

    Jiwa, Natasha / Takats, Zoltan / Leff, Daniel Richard

    Annals of surgical oncology

    2020  Volume 28, Issue 7, Page(s) 3761–3762

    MeSH term(s) Breast Neoplasms/diagnosis ; Breast Neoplasms/pathology ; Cytodiagnosis ; Female ; Humans ; Nipple Aspirate Fluid ; Nipples/pathology
    Language English
    Publishing date 2020-11-18
    Publishing country United States
    Document type Journal Article ; Meta-Analysis ; Systematic Review
    ZDB-ID 1200469-8
    ISSN 1534-4681 ; 1068-9265
    ISSN (online) 1534-4681
    ISSN 1068-9265
    DOI 10.1245/s10434-020-09355-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Breast health screening: a UK-wide questionnaire.

    Jiwa, Natasha / Takats, Zoltan / Leff, Daniel R / Sutton, Christopher

    BMJ nutrition, prevention & health

    2021  Volume 4, Issue 1, Page(s) 206–212

    Abstract: Background: Currently, there is an unmet clinical need in identifying and screening women at high risk of breast cancer, where tumours are often aggressive and treatment intervention is too late to prevent metastasis, recurrence and mortality. This has ... ...

    Abstract Background: Currently, there is an unmet clinical need in identifying and screening women at high risk of breast cancer, where tumours are often aggressive and treatment intervention is too late to prevent metastasis, recurrence and mortality. This has been brought into sharp focus by the SARS-CoV-2 global pandemic, constantly changing hospital policies and surgical guidelines in reducing access to established screening and treatment regimens. Nipple aspirate fluid (NAF), is thought to provide a unique window into the biological processes occurring within the breast, particularly in the context of a developing neoplasm. Evaluation of NAF in asymptomatic women, for novel chemical biomarkers of either early disease and/or cancer risk offers tremendous promise as a tool to facilitate early detection and to supplement screening. However, it is acceptability as a method of collection and screening by women is critical and yet unknown. A breast health questionnaire was disseminated to women through breast cancer charities, patient support groups and social media platforms, with the aim of collecting opinions on the acceptability of use of NAF as a potential screening tool.
    Method: Following ethical approval a questionnaire was prepared using online surveys consisting of four parts: (a) introduction on breast health screening in the UK, (b) core demographic data, (c) questions regarding screening and the acceptability of using NAF and (d) opinions about the process of collecting and using nipple fluid for screening. The voluntary and anonymous questionnaire was disseminated through social media, professional networks, charity websites and by individuals between October 2019 and December 2020. Survey responses were collected electronically, and the data analysed using online surveys statistical tools.
    Results: A total of 3178 women completed the questionnaire (65.9% Caucasian, 27.7% Asian/British Asian, 0.6% black and 5.0% other). Of these, 2650 women (83.4%) had no prior knowledge of NAF and 89.4% were unaware that NAF can be expressed in up to 90% of all women. Concerning their risk of breast cancer, 89.8% of women were keen to know their future risk of breast cancer, 8.5% were unsure whether they wanted to know their risk and a further, 1.6% did not want to know. Regarding screening, 944 women (29.8%) were unaware of the lack of routine National Health Service Breast Screening for those under the age of 47 years. Furthermore, 53.0% of women were unaware that mammographic screening is affected by breast density. In terms of the acceptability of home testing for breast health, 92.0% were keen to undergo a home test. Both 79.7% and 70.9% stated they would consider hand massage and a breast pump to acquire nipple fluid samples, respectively. A further 48.6% of women would consider the use of a hormonal nasal spray for the same purpose. However, with regards to acquiring results from NAF testing, 42.6% of women would prefer to receive results at home and 34.2% in a medical facility. Finally, 91.6% of women believed that breast health should be incorporated as part of school education curriculum.
    Conclusion: Public awareness regarding breast screening protocols and limitations of mammography could be improved. Many women were unaware that NAF might be a useful biofluid for future risk prediction, and yet the concept of self-testing of nipple fluid, with either hand massage or a breast pump was well received. Efforts should be made to increase awareness of the benefits of alternative and supplementary tests, especially in the context of high-risk individuals and younger patients.
    Language English
    Publishing date 2021-05-04
    Publishing country England
    Document type Journal Article
    ISSN 2516-5542
    ISSN (online) 2516-5542
    DOI 10.1136/bmjnph-2021-000266
    Database MEDical Literature Analysis and Retrieval System OnLINE

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