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  1. Article ; Online: Are holocentrics doomed to change? Limited chromosome number variation in Rhynchospora Vahl (Cyperaceae).

    Ribeiro, Tiago / Buddenhagen, Christopher E / Thomas, W Wayt / Souza, Gustavo / Pedrosa-Harand, Andrea

    Protoplasma

    2018  Volume 255, Issue 1, Page(s) 263–272

    Abstract: Karyotype evolution in species with non-localised centromeres (holocentric chromosomes) is usually very dynamic and associated with recurrent fission and fusion (also termed agmatoploidy/symploidy) events. In Rhynchospora (Cyperaceae), one of the most ... ...

    Abstract Karyotype evolution in species with non-localised centromeres (holocentric chromosomes) is usually very dynamic and associated with recurrent fission and fusion (also termed agmatoploidy/symploidy) events. In Rhynchospora (Cyperaceae), one of the most species-rich sedge genera, all analysed species have holocentric chromosomes and their numbers range from 2n = 4 to 2n = 84. Agmatoploidy/symploidy and polyploidy were suggested as the main processes in the reshuffling of Rhynchospora karyotypes, although testing different scenarios of chromosome number evolution in a phylogenetic framework has not been attempted until now. Here, we used maximum likelihood and model-based analyses, in combination with genome size estimation and ribosomal DNA distribution, to understand chromosome evolution in Rhynchospora. Overall, chromosome number variation showed a significant phylogenetic signal and the majority of the lineages maintained a karyotype of 2n = 10 (~48% of the species), the most likely candidate for the ancestral number of the genus. Higher and lower chromosome numbers were restricted to specific clades, whilst polyploidy and/or fusion/fission events were present in specific branches. Variation in genome size and ribosomal DNA site number showed no correlation with ploidy level or chromosome number. Although different mechanisms of karyotype evolution (polyploidy, fusion and fission) seem to be acting in distinct lineages, the degree of chromosome variation and the main mechanisms involved are comparable to those found in some monocentric genera and lower than expected for a holocentric genus.
    MeSH term(s) Chromosomes, Plant/genetics ; Cyperaceae/genetics ; DNA, Ribosomal/genetics ; Genome, Plant/genetics ; Karyotype ; Phylogeny ; Polyploidy
    Chemical Substances DNA, Ribosomal
    Language English
    Publishing date 2018-01
    Publishing country Austria
    Document type Journal Article
    ZDB-ID 123809-7
    ISSN 1615-6102 ; 0033-183X
    ISSN (online) 1615-6102
    ISSN 0033-183X
    DOI 10.1007/s00709-017-1154-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Flora e vegetação da Reserva Biológica de Pedra Talhada

    Nusbaumer, Louis / De Vasoncelllos Barbosa, Maria Regina / Thomas, W. Wayt

    Boissiera : mémoires de botanique systématique ; 127532-X ; 0373-2975 ; 68 ; 2015 ; 59

    2015  

    Publisher Conservatoire et Jardin Botaniques de la Ville de Genève
    Publishing country ch
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Ambientes naturais do Brasil

    Nusbaumer, Louis / De Vasconcellos Barbosa, Maria Regina / Thomas, W. Wayt

    Boissiera : mémoires de botanique systématique ; 127532-X ; 0373-2975 ; 68 ; 2015 ; 17

    2015  

    Publisher Conservatoire et Jardin Botaniques de la Ville de Genève
    Publishing country ch
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Inventário I da Reserva Biológica de Pedra Talhada. Flora

    Nusbaumer, Louis / De Vasconcelos Barbosa, Maria Regina / Thomas, W. Wayt

    Boissiera : mémoires de botanique systématique ; 127532-X ; 0373-2975 ; 68 ; 2015 ; 439

    2015  

    Publisher Conservatoire et Jardin Botaniques de la Ville de Genève
    Publishing country ch
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article: Large-scale monographs and floras: the sum of local floristic research

    Thomas, W. Wayt / Forzza, Rafaela C / Michelangeli, Fabian A / Giulietti, Ana M / Leitman, Paula M

    Plant ecology & diversity. 2012 June 1, v. 5, no. 2

    2012  

    Abstract: Large-scale systematic efforts, both floristic and taxonomic, are the result of the unification of information found in smaller-scale projects or even collections. Three examples, all from tropical America, are presented to illustrate how these data and ... ...

    Abstract Large-scale systematic efforts, both floristic and taxonomic, are the result of the unification of information found in smaller-scale projects or even collections. Three examples, all from tropical America, are presented to illustrate how these data and ideas are pooled. The effort to monograph the genus Leiothrix (Eriocaulaceae) is the successful work of a single researcher over time. The project to monograph the tribe Miconieae (Melastomataceae) demonstrates how joint effort by a collaborating group can monograph a group too large for any single person to attempt. The ‘List of Species of the Flora of Brazil’ project, with over 40,000 species listed, shows how over 400 systematists successfully contributed their knowledge to create a large-scale floristic reference.
    Keywords Leiothrix ; Melastomataceae ; flora ; Brazil
    Language English
    Dates of publication 2012-0601
    Size p. 217-223.
    Publishing place Taylor & Francis
    Document type Article
    ISSN 1755-1668
    DOI 10.1080/17550874.2011.622306
    Database NAL-Catalogue (AGRICOLA)

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  6. Article: A new classification of Cyperaceae (Poales) supported by phylogenomic data

    Larridon, Isabel / Zuntini, Alexandre R. / Léveillé‐Bourret, Étienne / Barrett, Russell L. / Starr, Julian R. / Muasya, A. Muthama / Villaverde, Tamara / Bauters, Kenneth / Brewer, Grace E. / Bruhl, Jeremy J. / Costa, Suzana M. / Elliott, Tammy L. / Epitawalage, Niroshini / Escudero, Marcial / Fairlie, Isabel / Goetghebeur, Paul / Hipp, Andrew L. / Jiménez‐Mejías, Pedro / Sabino Kikuchi, Izai A.B. /
    Luceño, Modesto / Márquez‐Corro, José Ignacio / Martín‐Bravo, Santiago / Maurin, Olivier / Pokorny, Lisa / Roalson, Eric H. / Semmouri, Ilias / Simpson, David A. / Spalink, Daniel / Thomas, W. Wayt / Wilson, Karen L. / Xanthos, Martin / Forest, Félix / Baker, William J.

    Journal of systematics and evolution. 2021 July, v. 59, no. 4

    2021  

    Abstract: Cyperaceae (sedges) are the third largest monocot family and are of considerable economic and ecological importance. Sedges represent an ideal model family to study evolutionary biology due to their species richness, global distribution, large ... ...

    Abstract Cyperaceae (sedges) are the third largest monocot family and are of considerable economic and ecological importance. Sedges represent an ideal model family to study evolutionary biology due to their species richness, global distribution, large discrepancies in lineage diversity, broad range of ecological preferences, and adaptations including multiple origins of C₄ photosynthesis and holocentric chromosomes. Goetghebeur′s seminal work on Cyperaceae published in 1998 provided the most recent complete classification at tribal and generic level, based on a morphological study of Cyperaceae inflorescence, spikelet, flower, and embryo characters, plus anatomical and other information. Since then, several family‐level molecular phylogenetic studies using Sanger sequence data have been published. Here, more than 20 years after the last comprehensive classification of the family, we present the first family‐wide phylogenomic study of Cyperaceae based on targeted sequencing using the Angiosperms353 probe kit sampling 311 accessions. In addition, 62 accessions available from GenBank were mined for overlapping reads and included in the phylogenomic analyses. Informed by this backbone phylogeny, a new classification for the family at the tribal, subtribal, and generic levels is proposed. The majority of previously recognized suprageneric groups are supported, and for the first time, we establish support for tribe Cryptangieae as a clade including the genus Koyamaea. We provide a taxonomic treatment including identification keys and diagnoses for the 2 subfamilies, 24 tribes, and 10 subtribes, and basic information on the 95 genera. The classification includes five new subtribes in tribe Schoeneae: Anthelepidinae, Caustiinae, Gymnoschoeninae, Lepidospermatinae, and Oreobolinae.
    Keywords Cyperaceae ; flowers ; geographical distribution ; phylogeny ; species richness ; spikelets
    Language English
    Dates of publication 2021-07
    Size p. 852-895.
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 2516638-4
    ISSN 1759-6831 ; 1674-4918
    ISSN (online) 1759-6831
    ISSN 1674-4918
    DOI 10.1111/jse.12757
    Database NAL-Catalogue (AGRICOLA)

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  7. Article: Large-scale monographs and floras: the sum of local floristic research

    Thomas, W. Wayt / Forzza, Rafaela C. / Michelangeli, Fabian A. / Giulietti, Ana M. / Leitman, Paula M.

    Plant ecology & diversity

    Volume v. 5,, Issue no. 2

    Abstract: Large-scale systematic efforts, both floristic and taxonomic, are the result of the unification of information found in smaller-scale projects or even collections. Three examples, all from tropical America, are presented to illustrate how these data and ... ...

    Abstract Large-scale systematic efforts, both floristic and taxonomic, are the result of the unification of information found in smaller-scale projects or even collections. Three examples, all from tropical America, are presented to illustrate how these data and ideas are pooled. The effort to monograph the genus Leiothrix (Eriocaulaceae) is the successful work of a single researcher over time. The project to monograph the tribe Miconieae (Melastomataceae) demonstrates how joint effort by a collaborating group can monograph a group too large for any single person to attempt. The ‘List of Species of the Flora of Brazil’ project, with over 40,000 species listed, shows how over 400 systematists successfully contributed their knowledge to create a large-scale floristic reference.
    Keywords Melastomataceae ; Leiothrix ; flora
    Language English
    Document type Article
    ISSN 1755-1668
    Database AGRIS - International Information System for the Agricultural Sciences and Technology

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