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  1. Book ; Online: Data Parallel C++

    Reinders, James / Ashbaugh, Ben / Brodman, James / Kinsner, Michael / Pennycook, John / Tian, Xinmin

    Programming Accelerated Systems Using C++ and SYCL

    2023  

    Keywords Programming & scripting languages: general ; Computer hardware ; heterogenous ; FPGA programming ; GPU programming ; Parallel programming ; Data parallelism ; SYCL ; Intel One API
    Language English
    Size 1 electronic resource (630 pages)
    Publisher Springer Nature
    Publishing place Berkeley
    Document type Book ; Online
    Note English
    HBZ-ID HT030609946
    ISBN 9781484296905 ; 1484296907
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  2. Book ; Online: Data Parallel C++

    Reinders, James / Ashbaugh, Ben / Brodman, James / Kinsner, Michael / Pennycook, John / Tian, Xinmin

    Programming Accelerated Systems Using C++ and SYCL

    2023  

    Author's details by James Reinders, Ben Ashbaugh, James Brodman, Michael Kinsner, John Pennycook, Xinmin Tian
    Keywords Compilers (Computer programs) ; Makerspaces
    Language English
    Size 1 Online-Ressource (XXX, 630 p. 329 illus., 294 illus. in color)
    Edition 2nd ed. 2023
    Publisher Apress ; Imprint: Apress
    Publishing place Berkeley, CA
    Document type Book ; Online
    HBZ-ID HT030389765
    ISBN 978-1-4842-9691-2 ; 9781484296905 ; 9781484296929 ; 1-4842-9691-5 ; 1484296907 ; 1484296923
    DOI 10.1007/978-1-4842-9691-2
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  3. Book ; Online: Data Parallel C++

    Reinders, James / Ashbaugh, Ben / Brodman, James / Kinsner, Michael / Pennycook, John / Tian, Xinmin

    Mastering DPC++ for Programming of Heterogeneous Systems using C++ and SYCL

    2021  

    Author's details by James Reinders, Ben Ashbaugh, James Brodman, Michael Kinsner, John Pennycook, Xinmin Tian
    Keywords Programming languages (Electronic computers) ; Computer input-output equipment
    Subject code 005.13
    Language English
    Size 1 Online-Ressource (XXVI, 548 p. 338 illus., 280 illus. in color)
    Edition 1st ed. 2021
    Publisher Apress ; Imprint: Apress
    Publishing place Berkeley, CA
    Document type Book ; Online
    HBZ-ID HT020661054
    ISBN 978-1-4842-5574-2 ; 9781484255735 ; 9781484255759 ; 1-4842-5574-7 ; 1484255739 ; 1484255755
    DOI 10.1007/978-1-4842-5574-2
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  4. Book ; Online: Data Parallel C++ : Mastering DPC++ for Programming of Heterogeneous Systems using C++ and SYCL

    Reinders, James / Ashbaugh, Ben / Brodman, James / Kinsner, Michael / Pennycook, John / Tian, Xinmin

    2021  

    Keywords Programming & scripting languages: general ; Computer hardware ; Programming Languages, Compilers, Interpreters ; Hardware and Maker ; Maker ; heterogenous ; FPGA programming ; GPU programming ; Parallel programming ; Data parallelism ; SYCL ; Intel One API ; Compilers & interpreters
    Size 1 electronic resource (548 pages)
    Publisher Springer Nature
    Document type Book ; Online
    Note English ; Open Access
    HBZ-ID HT021029576
    ISBN 978-1-4842-5574-2 ; 1-4842-5574-7
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  5. Article ; Online: [Characteristics of the chloroplast genome of

    Turdi, Rayhangul / Mu, Lihong / Tian, Xinmin

    Sheng wu gong cheng xue bao = Chinese journal of biotechnology

    2022  Volume 38, Issue 8, Page(s) 2999–3013

    Abstract: In order to characterize the chloroplast genome and phylogenetic relationships ... ...

    Abstract In order to characterize the chloroplast genome and phylogenetic relationships of
    MeSH term(s) Codon ; Genome, Chloroplast/genetics ; Microsatellite Repeats ; Phylogeny ; Ranunculaceae/genetics
    Chemical Substances Codon
    Language Chinese
    Publishing date 2022-08-25
    Publishing country China
    Document type Journal Article
    ZDB-ID 1042206-7
    ISSN 1872-2075 ; 1042-749X
    ISSN (online) 1872-2075
    ISSN 1042-749X
    DOI 10.13345/j.cjb.210876
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Transcriptomic study of <i>Suaeda salsa</i> in response to salt and drought stress

    Ding, Zhijie / Liu, Zhiyou / Bao, Jinbo / Wang, Yuwei / Li, Jialei / Wang, Qiuyan / Tian, Xinmin

    Functional Plant Biology. 2023, v. 50, no. 10 p.765-776

    2023  

    Abstract: Drought and salinity are the main factors limiting agricultural production. Improving crop resistance to relieve land stress is a major challenge in agriculture. The salt-tolerant species Suaeda salsa is a typical indicator of saline soil. It has a ... ...

    Abstract Drought and salinity are the main factors limiting agricultural production. Improving crop resistance to relieve land stress is a major challenge in agriculture. The salt-tolerant species Suaeda salsa is a typical indicator of saline soil. It has a strong drought tolerance and can be used as a model plant to study salt and drought tolerance in plants. In this study, transcriptome sequencing and bioinformatic analysis were performed to study gene expression changes in S. salsa under salt and drought stresses, and to screen out differentially expressed genes. The genetic changes were most abundant in cellular processes, metabolic processes, ion binding, signalling, post-translational modifications, protein conversion, and molecular chaperones, suggesting that the above methods may play a significant role in the response of S. salsa to external salt and drought stress. Enrichment analysis showed that carbohydrate metabolic processes, oxidoreductase activity, transmembrane transport, kinase activity, cellular protein modification processes, and ion-binding pathways are involved in the stress response of S. salsa .
    Keywords Suaeda salsa ; bioinformatics ; carbohydrates ; drought ; drought tolerance ; gene expression ; gene expression regulation ; plant biology ; saline soils ; salinity ; salt tolerance ; stress response ; transcriptome ; transcriptomics ; water stress ; differentially expressed genes ; drought stress ; RNA-seq ; salt stress ; signalling pathway ; stress tolerance mechanism ; Suaeda salsa ; transcriptome</kwd>
    Language English
    Size p. 765-776.
    Publishing place CSIRO Publishing
    Document type Article ; Online
    ZDB-ID 2071582-1
    ISSN 1445-4408
    ISSN 1445-4408
    DOI 10.1071/FP23050
    Database NAL-Catalogue (AGRICOLA)

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  7. Article ; Online: Metabolomic analysis reveals key metabolites and metabolic pathways in <i>Suaeda salsa</i> under salt and drought stress

    Bao, Jinbo / Liu, Zhiyou / Ding, Zhijie / Yisilam, Gulbar / Wang, Qiuyan / Tian, Xinmin

    Functional Plant Biology. 2023, v. 50, no. 9 p.701-711

    2023  

    Abstract: Suaeda salsa is an important salt- and drought-tolerant plant with important ecological restoration roles. However, little is known about its underlying molecular regulatory mechanisms. Therefore, understanding the response mechanisms of plants to salt ... ...

    Abstract Suaeda salsa is an important salt- and drought-tolerant plant with important ecological restoration roles. However, little is known about its underlying molecular regulatory mechanisms. Therefore, understanding the response mechanisms of plants to salt and drought stress is of great importance. In this study, metabolomics analysis was performed to evaluate the effects of salt and drought stress on S. salsa . The experiment consisted of three treatments: (1) control (CK); (2) salt stress (Ps); and (3) drought stress (Pd). The results showed that compared with the control group, S. salsa showed significant differences in phenotypes under salt and drought stress conditions. First, a total of 207 and 292 differential metabolites were identified in the Ps/CK and Pd/CK groups, respectively. Second, some soluble sugars and amino acids, such as raffinose, maltopentoses, D -altro-beptulose, D -proline, valine-proline, proline, tryptophan and glycine-L -leucine, showed increased activity under salt and drought stress conditions, suggesting that these metabolites may be responsible for salt and drought resistance in S. salsa . Third, the flavonoid biosynthetic and phenylalanine metabolic pathways were significantly enriched under both salt and drought stress conditions, indicating that these two metabolic pathways play important roles in salt and drought stress resistance in S. salsa . The findings of this study provide new insights into the salt and drought tolerance mechanisms of S. salsa .
    Keywords Suaeda salsa ; biosynthesis ; drought tolerance ; ecological restoration ; flavonoids ; metabolites ; metabolomics ; phenylalanine ; proline ; raffinose ; salt stress ; stress tolerance ; tryptophan ; water stress ; abiotic ; enrichment ; metabolic profiling ; osmoregulation ; pathways ; stress response ; tolerance
    Language English
    Size p. 701-711.
    Publishing place CSIRO Publishing
    Document type Article ; Online
    ZDB-ID 2071582-1
    ISSN 1445-4408
    ISSN 1445-4408
    DOI 10.1071/FP23049
    Database NAL-Catalogue (AGRICOLA)

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  8. Article: Comparative analyses of chloroplast genomes in 'Red Fuji' apples: low rate of chloroplast genome mutations.

    Miao, Haoyu / Bao, Jinbo / Li, Xueli / Ding, Zhijie / Tian, Xinmin

    PeerJ

    2022  Volume 10, Page(s) e12927

    Abstract: Background: Fuji is a vital apple cultivar, and has been propagated clonally for nearly a century. The chloroplast genome variation of Fuji apples in China has not been investigated.: Methods: This study used next-generation high-throughput ... ...

    Abstract Background: Fuji is a vital apple cultivar, and has been propagated clonally for nearly a century. The chloroplast genome variation of Fuji apples in China has not been investigated.
    Methods: This study used next-generation high-throughput sequencing and bioinformatics to compare and analyze the chloroplast genome of 24 Red Fuji varieties from nine regions in China.
    Results: The results showed that the 24 chloroplast genomes were highly conserved in genome size, structure, and organization. The length of the genomes ranged from 160,063 to 160,070 bp, and the GC content was 36.6%. Each of the 24 chloroplast genomes encoded 131 genes, including 84 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The results of repeat sequence detection were consistent; the most common sequence was forward repeats (53.1%), and the least common sequence was complementary repeats (4.1%). The chloroplast genome sequence of Red Fuji was highly conserved. Two indels were detected, but the PI value was 0, and there were no SNP loci. The chloroplast genome variation rate of Red Fuji was low.
    Language English
    Publishing date 2022-02-21
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2703241-3
    ISSN 2167-8359
    ISSN 2167-8359
    DOI 10.7717/peerj.12927
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Complete chloroplast genome studies of different apple varieties indicated the origin of modern cultivated apples from

    Li, Xueli / Ding, Zhijie / Miao, Haoyu / Bao, Jinbo / Tian, Xinmin

    PeerJ

    2022  Volume 10, Page(s) e13107

    Abstract: Background: Apple is one of the most important temperate deciduous fruit trees worldwide, with a wide range of cultivation. In this study, we assessed the variations and phylogenetic relationships between the complete chloroplast genomes of wild and ... ...

    Abstract Background: Apple is one of the most important temperate deciduous fruit trees worldwide, with a wide range of cultivation. In this study, we assessed the variations and phylogenetic relationships between the complete chloroplast genomes of wild and cultivated apples (
    Method: We obtained the complete chloroplast genomes of 24 apple varieties using next-generation sequencing technology and compared them with genomes of (downloaded from NCBI) the wild species.
    Result: The chloroplast genome of
    Language English
    Publishing date 2022-03-18
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2703241-3
    ISSN 2167-8359
    ISSN 2167-8359
    DOI 10.7717/peerj.13107
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Transcriptomic study of

    Ding, Zhijie / Liu, Zhiyou / Bao, Jinbo / Wang, Yuwei / Li, Jialei / Wang, Qiuyan / Tian, Xinmin

    Functional plant biology : FPB

    2023  Volume 50, Issue 10, Page(s) 765–776

    Abstract: Drought and salinity are the main factors limiting agricultural production. Improving crop resistance to relieve land stress is a major challenge in agriculture. The salt-tolerant species Suaeda salsa is a typical indicator of saline soil. It has a ... ...

    Abstract Drought and salinity are the main factors limiting agricultural production. Improving crop resistance to relieve land stress is a major challenge in agriculture. The salt-tolerant species Suaeda salsa is a typical indicator of saline soil. It has a strong drought tolerance and can be used as a model plant to study salt and drought tolerance in plants. In this study, transcriptome sequencing and bioinformatic analysis were performed to study gene expression changes in S. salsa under salt and drought stresses, and to screen out differentially expressed genes. The genetic changes were most abundant in cellular processes, metabolic processes, ion binding, signalling, post-translational modifications, protein conversion, and molecular chaperones, suggesting that the above methods may play a significant role in the response of S. salsa to external salt and drought stress. Enrichment analysis showed that carbohydrate metabolic processes, oxidoreductase activity, transmembrane transport, kinase activity, cellular protein modification processes, and ion-binding pathways are involved in the stress response of S. salsa .
    Language English
    Publishing date 2023-08-10
    Publishing country Australia
    Document type Journal Article
    ZDB-ID 2071582-1
    ISSN 1445-4416 ; 1445-4408
    ISSN (online) 1445-4416
    ISSN 1445-4408
    DOI 10.1071/FP23050
    Database MEDical Literature Analysis and Retrieval System OnLINE

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