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  1. AU="Treitz, Christian"
  2. AU=Abd-Elsayed Alaa
  3. AU="Vesajoki, Marja" AU="Vesajoki, Marja"
  4. AU=Lewiecki E Michael
  5. AU=von Bubnoff Nikolas
  6. AU="Tang, Walfred W C"
  7. AU=Hashitani Hikaru
  8. AU="Löw, Martina"
  9. AU="Robertson, Leon S"
  10. AU="Wright, Aaron T"
  11. AU="Jones, T. B."
  12. AU=Shirtliff Mark E.
  13. AU="Riis, Kamilla R"
  14. AU="Xu, Leyao"
  15. AU="Udayakumar, Karthikrajan Parasuraman"
  16. AU="Fry, Brian"

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  1. Artikel ; Online: The mitochondrial BCKD complex interacts with hepatic apolipoprotein E in cultured cells in vitro and mouse livers in vivo

    Rueter, Johanna / Rimbach, Gerald / Treitz, Christian / Schloesser, Anke / Lüersen, Kai / Tholey, Andreas / Huebbe, Patricia

    Cell. Mol. Life Sci.. 2023 Mar., v. 80, no. 3 p.59-59

    2023  

    Abstract: BACKGROUND AND AIMS: Apolipoprotein E (APOE) is known for its role in lipid metabolism and its association with age-related disease pathology. The aim of the present work was to identify previously unknown functions of APOE based on the detection of ... ...

    Abstract BACKGROUND AND AIMS: Apolipoprotein E (APOE) is known for its role in lipid metabolism and its association with age-related disease pathology. The aim of the present work was to identify previously unknown functions of APOE based on the detection of novel APOE protein-protein interaction candidates. APPROACH AND RESULTS: APOE targeted replacement mice and transfected cultured hepatocytes expressing the human isoforms APOE3 and APOE4 were used. For 7 months, APOE3 and APOE4 mice were fed a high-fat and high-sugar diet to induce obesity, while a subgroup was subjected to 30% dietary restriction. Proteomic analysis of coimmunoprecipitation products from APOE mouse liver extracts revealed 28 APOE-interacting candidate proteins, including branched-chain alpha-keto acid dehydrogenase (BCKD) complex subunit alpha (BCKDHA) and voltage-dependent anion-selective channel 1 (VDAC1). The binding of APOE and BCKDHA was verified in situ by proximity ligation assay in cultured cells. The activity of the BCKD enzyme complex was significantly higher in obese APOE4 mice than in APOE3 mice, while the plasma levels of branched-chain amino acids and mTOR signalling proteins were not different. However, the protein-protein interaction with VDAC1 was strongly induced in APOE3 and APOE4 mice upon dietary restriction, suggesting a prominent role of APOE in mitochondrial function. CONCLUSIONS: The protein-protein interactions of APOE with BCKDHA and VDAC1 appear to be of physiological relevance and are modulated upon dietary restriction. Because these are mitochondrial proteins, it may be suggested that APOE is involved in mitochondria-related processes and adaptation to hepatic energy demands.
    Schlagwörter apolipoprotein E ; dietary restriction ; energy ; hepatocytes ; high carbohydrate diet ; humans ; keto acids ; lipid metabolism ; liver ; mice ; mitochondria ; obesity ; oxidoreductases ; precipitin tests ; protein-protein interactions ; proteomics
    Sprache Englisch
    Erscheinungsverlauf 2023-03
    Umfang p. 59.
    Erscheinungsort Springer International Publishing
    Dokumenttyp Artikel ; Online
    ZDB-ID 1358415-7
    ISSN 1420-9071 ; 1420-682X
    ISSN (online) 1420-9071
    ISSN 1420-682X
    DOI 10.1007/s00018-023-04706-x
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  2. Buch ; Online ; Dissertation / Habilitation: Mass Spectrometry based Bioanalytics on Model Organisms

    Treitz, Christian [Verfasser]

    2018  

    Verfasserangabe Christian Treitz
    Schlagwörter Naturwissenschaften ; Science
    Thema/Rubrik (Code) sg500
    Sprache Englisch
    Verlag Universitätsbibliothek Kiel
    Erscheinungsort Kiel
    Dokumenttyp Buch ; Online ; Dissertation / Habilitation
    Datenquelle Digitale Dissertationen im Internet

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  3. Artikel ; Online: The

    Pees, Barbara / Peters, Lena / Treitz, Christian / Hamerich, Inga K / Kissoyan, Kohar A B / Tholey, Andreas / Dierking, Katja

    mBio

    2024  Band 15, Heft 4, Seite(n) e0346323

    Abstract: ... ...

    Abstract The
    Mesh-Begriff(e) Animals ; Caenorhabditis elegans/microbiology ; Proteome/metabolism ; Pseudomonas/metabolism ; Caenorhabditis elegans Proteins/genetics ; Caenorhabditis elegans Proteins/metabolism ; Anti-Infective Agents/metabolism ; Vitamins
    Chemische Substanzen Proteome ; Caenorhabditis elegans Proteins ; Anti-Infective Agents ; Vitamins
    Sprache Englisch
    Erscheinungsdatum 2024-02-27
    Erscheinungsland United States
    Dokumenttyp Journal Article
    ZDB-ID 2557172-2
    ISSN 2150-7511 ; 2161-2129
    ISSN (online) 2150-7511
    ISSN 2161-2129
    DOI 10.1128/mbio.03463-23
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  4. Artikel ; Online: The mitochondrial BCKD complex interacts with hepatic apolipoprotein E in cultured cells in vitro and mouse livers in vivo.

    Rueter, Johanna / Rimbach, Gerald / Treitz, Christian / Schloesser, Anke / Lüersen, Kai / Tholey, Andreas / Huebbe, Patricia

    Cellular and molecular life sciences : CMLS

    2023  Band 80, Heft 3, Seite(n) 59

    Abstract: Background and aims: Apolipoprotein E (APOE) is known for its role in lipid metabolism and its association with age-related disease pathology. The aim of the present work was to identify previously unknown functions of APOE based on the detection of ... ...

    Abstract Background and aims: Apolipoprotein E (APOE) is known for its role in lipid metabolism and its association with age-related disease pathology. The aim of the present work was to identify previously unknown functions of APOE based on the detection of novel APOE protein-protein interaction candidates.
    Approach and results: APOE targeted replacement mice and transfected cultured hepatocytes expressing the human isoforms APOE3 and APOE4 were used. For 7 months, APOE3 and APOE4 mice were fed a high-fat and high-sugar diet to induce obesity, while a subgroup was subjected to 30% dietary restriction. Proteomic analysis of coimmunoprecipitation products from APOE mouse liver extracts revealed 28 APOE-interacting candidate proteins, including branched-chain alpha-keto acid dehydrogenase (BCKD) complex subunit alpha (BCKDHA) and voltage-dependent anion-selective channel 1 (VDAC1). The binding of APOE and BCKDHA was verified in situ by proximity ligation assay in cultured cells. The activity of the BCKD enzyme complex was significantly higher in obese APOE4 mice than in APOE3 mice, while the plasma levels of branched-chain amino acids and mTOR signalling proteins were not different. However, the protein-protein interaction with VDAC1 was strongly induced in APOE3 and APOE4 mice upon dietary restriction, suggesting a prominent role of APOE in mitochondrial function.
    Conclusions: The protein-protein interactions of APOE with BCKDHA and VDAC1 appear to be of physiological relevance and are modulated upon dietary restriction. Because these are mitochondrial proteins, it may be suggested that APOE is involved in mitochondria-related processes and adaptation to hepatic energy demands.
    Mesh-Begriff(e) Mice ; Humans ; Animals ; Apolipoprotein E4/metabolism ; Apolipoprotein E3/metabolism ; Proteomics ; Apolipoproteins E/metabolism ; Liver/metabolism ; Cells, Cultured ; Mitochondria/metabolism ; Carrier Proteins/metabolism ; Mice, Transgenic
    Chemische Substanzen Apolipoprotein E4 ; Apolipoprotein E3 ; Apolipoproteins E ; Carrier Proteins
    Sprache Englisch
    Erscheinungsdatum 2023-02-07
    Erscheinungsland Switzerland
    Dokumenttyp Journal Article
    ZDB-ID 1358415-7
    ISSN 1420-9071 ; 1420-682X
    ISSN (online) 1420-9071
    ISSN 1420-682X
    DOI 10.1007/s00018-023-04706-x
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  5. Artikel ; Online: The intracellular proteome of the gut bacterium Bacteroides thetaiotaomicron is widely unaffected by a switch from glucose to sucrose as main carbohydrate source.

    Genth, Jerome / Kaleja, Patrick / Treitz, Christian / Schäfer, Kathrin / Graspeuntner, Simon / Rupp, Jan / Tholey, Andreas

    Proteomics

    2022  Band 22, Heft 22, Seite(n) e2200189

    Abstract: Bacteroides thetaiotaomicron is a gram negative bacterium within the human gut microbiome that metabolizes a wide range of dietary and mucosal polysaccharides. Here, we analyze the proteome response of B. thetaiotaomicron cultivated on two different ... ...

    Abstract Bacteroides thetaiotaomicron is a gram negative bacterium within the human gut microbiome that metabolizes a wide range of dietary and mucosal polysaccharides. Here, we analyze the proteome response of B. thetaiotaomicron cultivated on two different carbon sources, glucose and sucrose. Two quantitative LC-MS based proteomics approaches, encompassing label free quantification and isobaric labeling by tandem mass tags were applied. The results obtained by both workflows were compared with respect to the number of identified and quantified proteins, peptides supporting identification and quantification, sequence coverage, and reproducibility. A total of 1719 and 1696 proteins, respectively, were quantified, covering 35 % of the predicted B. thetaiotaomicron proteome. The data show that B. thetaiotaomicron widely maintains its intracellular proteome upon change of the carbohydrates and that major changes are observed solely in the machinery necessary to make use of the carbon sources provided. With respect to the central role of carbohydrates on gut health these data contribute to the understanding of how different carbohydrates contribute to shape bacterial community in the gut microbiome. All proteomics raw data have been uploaded to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD033704.
    Mesh-Begriff(e) Humans ; Bacteroides thetaiotaomicron/metabolism ; Proteome/metabolism ; Sucrose ; Glucose/metabolism ; Reproducibility of Results ; Carbon/metabolism
    Chemische Substanzen Proteome ; Sucrose (57-50-1) ; Glucose (IY9XDZ35W2) ; Carbon (7440-44-0)
    Sprache Englisch
    Erscheinungsdatum 2022-08-11
    Erscheinungsland Germany
    Dokumenttyp Journal Article
    ZDB-ID 2032093-0
    ISSN 1615-9861 ; 1615-9853
    ISSN (online) 1615-9861
    ISSN 1615-9853
    DOI 10.1002/pmic.202200189
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  6. Artikel: MSTopDiff: A Tool for the Visualization of Mass Shifts in Deconvoluted Top-Down Proteomics Data for the Database-Independent Detection of Protein Modifications

    Kaulich, Philipp T. / Winkels, Konrad / Kaulich, Tobias B. / Treitz, Christian / Cassidy, Liam / Tholey, Andreas

    Journal of proteome research. 2021 Nov. 24, v. 21, no. 1

    2021  

    Abstract: Top-down proteomics analyzes intact proteoforms with all of their post-translational modifications and genetic and RNA splice variants. In addition, modifications introduced either deliberately or inadvertently during sample preparation, that is, via ... ...

    Abstract Top-down proteomics analyzes intact proteoforms with all of their post-translational modifications and genetic and RNA splice variants. In addition, modifications introduced either deliberately or inadvertently during sample preparation, that is, via oxidation, alkylation, or labeling reagents, or through the formation of noncovalent adducts (e.g., detergents) further increase the sample complexity. To facilitate the recognition of protein modifications introduced during top-down analysis, we developed MSTopDiff, a software tool with a graphical user interface written in Python, which allows one to detect protein modifications by calculating and visualizing mass differences in top-down data without the prerequisite of a database search. We demonstrate the successful application of MSTopDiff for the detection of artifacts originating from oxidation, formylation, overlabeling during isobaric labeling, and adduct formation with cations or sodium dodecyl sulfate. MSTopDiff offers several modes of data representation using deconvoluted MS1 or MS2 spectra. In addition to artificial modifications, the tool enables the visualization of biological modifications such as phosphorylation and acetylation. MSTopDiff provides an overview of the artificial and biological modifications in top-down proteomics samples, which makes it a valuable tool in quality control of standard workflows and for parameter evaluation during method development.
    Schlagwörter RNA ; acetylation ; alkylation ; computer software ; databases ; oxidation ; phosphorylation ; proteome ; proteomics ; quality control ; research ; sodium dodecyl sulfate ; user interface
    Sprache Englisch
    Erscheinungsverlauf 2021-1124
    Umfang p. 20-29.
    Erscheinungsort American Chemical Society
    Dokumenttyp Artikel
    ZDB-ID 2078618-9
    ISSN 1535-3907 ; 1535-3893
    ISSN (online) 1535-3907
    ISSN 1535-3893
    DOI 10.1021/acs.jproteome.1c00766
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  7. Artikel ; Online: MSTopDiff: A Tool for the Visualization of Mass Shifts in Deconvoluted Top-Down Proteomics Data for the Database-Independent Detection of Protein Modifications.

    Kaulich, Philipp T / Winkels, Konrad / Kaulich, Tobias B / Treitz, Christian / Cassidy, Liam / Tholey, Andreas

    Journal of proteome research

    2021  Band 21, Heft 1, Seite(n) 20–29

    Abstract: Top-down proteomics analyzes intact proteoforms with all of their post-translational modifications and genetic and RNA splice variants. In addition, modifications introduced either deliberately or inadvertently during sample preparation, that is, via ... ...

    Abstract Top-down proteomics analyzes intact proteoforms with all of their post-translational modifications and genetic and RNA splice variants. In addition, modifications introduced either deliberately or inadvertently during sample preparation, that is, via oxidation, alkylation, or labeling reagents, or through the formation of noncovalent adducts (e.g., detergents) further increase the sample complexity. To facilitate the recognition of protein modifications introduced during top-down analysis, we developed MSTopDiff, a software tool with a graphical user interface written in Python, which allows one to detect protein modifications by calculating and visualizing mass differences in top-down data without the prerequisite of a database search. We demonstrate the successful application of MSTopDiff for the detection of artifacts originating from oxidation, formylation, overlabeling during isobaric labeling, and adduct formation with cations or sodium dodecyl sulfate. MSTopDiff offers several modes of data representation using deconvoluted MS1 or MS2 spectra. In addition to artificial modifications, the tool enables the visualization of biological modifications such as phosphorylation and acetylation. MSTopDiff provides an overview of the artificial and biological modifications in top-down proteomics samples, which makes it a valuable tool in quality control of standard workflows and for parameter evaluation during method development.
    Mesh-Begriff(e) Acetylation ; Protein Processing, Post-Translational ; Proteomics/methods ; Software ; Tandem Mass Spectrometry
    Sprache Englisch
    Erscheinungsdatum 2021-11-24
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2078618-9
    ISSN 1535-3907 ; 1535-3893
    ISSN (online) 1535-3907
    ISSN 1535-3893
    DOI 10.1021/acs.jproteome.1c00766
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  8. Artikel ; Online: Identification and Quantification of N-Acyl Homoserine Lactones Involved in Bacterial Communication by Small-Scale Synthesis of Internal Standards and Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry.

    Leipert, Jan / Treitz, Christian / Leippe, Matthias / Tholey, Andreas

    Journal of the American Society for Mass Spectrometry

    2017  Band 28, Heft 12, Seite(n) 2538–2547

    Abstract: N-acyl homoserine lactones (AHL) are small signal molecules involved in the quorum sensing of many gram-negative bacteria, and play an important role in biofilm formation and pathogenesis. Present analytical methods for identification and quantification ... ...

    Abstract N-acyl homoserine lactones (AHL) are small signal molecules involved in the quorum sensing of many gram-negative bacteria, and play an important role in biofilm formation and pathogenesis. Present analytical methods for identification and quantification of AHL require time-consuming sample preparation steps and are hampered by the lack of appropriate standards. By aiming at a fast and straightforward method for AHL analytics, we investigated the applicability of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). Suitable MALDI matrices, including crystalline and ionic liquid matrices, were tested and the fragmentation of different AHL in collision-induced dissociation MS/MS was studied, providing information about characteristic marker fragments ions. Employing small-scale synthesis protocols, we established a versatile and cost-efficient procedure for fast generation of isotope-labeled AHL standards, which can be used without extensive purification and yielded accurate standard curves. Quantitative analysis was possible in the low pico-molar range, with lower limits of quantification reaching from 1 to 5 pmol for different AHL. The developed methodology was successfully applied in a quantitative MALDI MS analysis of low-volume culture supernatants of Pseudomonas aeruginosa. Graphical abstract ᅟ.
    Mesh-Begriff(e) Acyl-Butyrolactones/analysis ; Acyl-Butyrolactones/chemical synthesis ; Acyl-Butyrolactones/metabolism ; Chemistry Techniques, Synthetic ; Humans ; Ionic Liquids/chemistry ; Pseudomonas Infections/microbiology ; Pseudomonas aeruginosa/chemistry ; Pseudomonas aeruginosa/physiology ; Quorum Sensing ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods ; Tandem Mass Spectrometry/methods
    Chemische Substanzen Acyl-Butyrolactones ; Ionic Liquids
    Sprache Englisch
    Erscheinungsdatum 2017-08-30
    Erscheinungsland United States
    Dokumenttyp Journal Article
    ZDB-ID 1073671-2
    ISSN 1879-1123 ; 1044-0305
    ISSN (online) 1879-1123
    ISSN 1044-0305
    DOI 10.1007/s13361-017-1777-x
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  9. Artikel ; Online: ATTR- and AFib amyloid - two different types of amyloid in the annular ligament of trigger finger.

    Treitz, Christian / Müller-Marienburg, Neelis / Meliß, Rolf Rüdiger / Urban, Peter / Axmann, Hans-Detlef / Siebert, Frank / Becker, Karsten / Martens, Klaus / Behrens, Hans-Michael / Gericke, Eva / Tholey, Andreas / Röcken, Christoph

    Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis

    2023  Band 30, Heft 4, Seite(n) 394–406

    Abstract: Introduction: Histological examination of tissue specimens obtained during surgical treatment of trigger finger frequently encountered unclassifiable amyloid deposits in the annular ligament. We systematically explored this unknown type by a ... ...

    Abstract Introduction: Histological examination of tissue specimens obtained during surgical treatment of trigger finger frequently encountered unclassifiable amyloid deposits in the annular ligament. We systematically explored this unknown type by a comprehensive analysis using histology, immunohistochemistry, and quantitative mass spectrometry-based proteomics.
    Methods: 205 tissue specimens of annular ligaments were obtained from 172 patients. Each specimen was studied by histology and immunohistochemistry. Tissue specimens obtained from ten patients with histology proven amyloid in annular ligament were analysed by label-free quantitative proteomics. Histological and immunohistochemical findings were correlated with patient demographics.
    Results: Amyloid was present as band like deposits along the surface of annular ligament, dot like or patchy deposits within the matrix. Immunohistochemistry identified ATTR amyloid in 92 specimens (mostly patchy in the matrix), while the band like deposits of 100 specimens remained unclassifiable. Proteomic profiles identified the unknown amyloid as most likely of fibrinogen origin. The complete cohort was re-examined by immunohistochemistry using a custom-made antibody and confirmed the presence of fibrinogen alpha-chain (FGA) in a hitherto unclassifiable type of amyloid in annular ligament.
    Conclusion: Our study shows that two different types of amyloid affect the annular ligament, ATTR amyloid and AFib amyloid, with distinct demographic patient characteristics and histomorphological deposition patterns.
    Mesh-Begriff(e) Humans ; Proteomics ; Trigger Finger Disorder ; Atrial Fibrillation ; Amyloid ; Amyloidogenic Proteins ; Fibrinogen ; Ligaments
    Chemische Substanzen Amyloid ; Amyloidogenic Proteins ; Fibrinogen (9001-32-5)
    Sprache Englisch
    Erscheinungsdatum 2023-06-23
    Erscheinungsland England
    Dokumenttyp Journal Article
    ZDB-ID 1205246-2
    ISSN 1744-2818 ; 1350-6129
    ISSN (online) 1744-2818
    ISSN 1350-6129
    DOI 10.1080/13506129.2023.2226298
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  10. Artikel: Enzyme-fusion strategies for redirecting and improving carotenoid synthesis in S. cerevisiae

    Rabeharindranto, Hery / Castaño-Cerezo, Sara / Lautier, Thomas / Garcia-Alles, Luis F / Treitz, Christian / Tholey, Andreas / Truan, Gilles

    Metabolic Engineering Communications. 2019 June, v. 8

    2019  

    Abstract: Spatial clustering of enzymes has proven an elegant approach to optimize metabolite transfer between enzymes in synthetic metabolic pathways. Among the multiple methods used to promote colocalisation, enzyme fusion is probably the simplest. Inspired by ... ...

    Abstract Spatial clustering of enzymes has proven an elegant approach to optimize metabolite transfer between enzymes in synthetic metabolic pathways. Among the multiple methods used to promote colocalisation, enzyme fusion is probably the simplest. Inspired by natural systems, we have explored the metabolic consequences of spatial reorganizations of the catalytic domains of Xanthophyllomyces dendrorhous carotenoid enzymes produced in Saccharomyces cerevisiae. Synthetic genes encoding bidomain enzymes composed of CrtI and CrtB domains from the natural CrtYB fusion were connected in the two possible orientations, using natural and synthetic linkers. A tridomain enzyme (CrtB, CrtI, CrtY) harboring the full β-carotene producing pathway was also constructed. Our results demonstrate that domain order and linker properties considerably impact both the expression and/or stability of the constructed proteins and the functionality of the catalytic domains, all concurring to either diminish or boost specific enzymatic steps of the metabolic pathway. Remarkably, the yield of β-carotene production doubled with the tridomain fusion while precursor accumulation decreased, leading to an improvement of the pathway efficiency, when compared to the natural system. Our data strengthen the idea that fusion of enzymatic domains is an appropriate technique not only to achieve spatial confinement and enhance the metabolic flux but also to produce molecules not easily attainable with natural enzymatic configurations, even with membrane bound enzymes.
    Schlagwörter Saccharomyces cerevisiae ; Xanthophyllomyces dendrorhous ; active sites ; beta-carotene ; biochemical pathways ; enzymes ; metabolites ; proteins ; synthetic genes
    Sprache Englisch
    Erscheinungsverlauf 2019-06
    Erscheinungsort Elsevier B.V.
    Dokumenttyp Artikel
    ZDB-ID 2821894-2
    ISSN 2214-0301
    ISSN 2214-0301
    DOI 10.1016/j.mec.2019.e00086
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