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  1. Article: Genetic markers of the risk of coronary heart disease and coronary artery thrombosis developing in the Kazakh population.

    Taizhanova, Dana / Toleuova, Aliya / Babenko, Dmitry / Turmuhambetova, Anar / Bodaubay, Roza / Visternichan, Olga / Kalimbetova, Akerke / Ahmaltdinova, Ludmila / Kurmanova, Aigul

    Caspian journal of internal medicine

    2023  Volume 14, Issue 2, Page(s) 249–256

    Abstract: Background: Surgical methods such as coronary artery bypass grafting and percutaneous coronary interventions (PCI) are widely used along with traditional conservative therapy in the treatment of coronary artery disease. The disease outcome directly ... ...

    Abstract Background: Surgical methods such as coronary artery bypass grafting and percutaneous coronary interventions (PCI) are widely used along with traditional conservative therapy in the treatment of coronary artery disease. The disease outcome directly depends on timely diagnosis and treatment. A significant role in predicting the effectiveness of treatment is given to personification of treatment and management of the patient. In this case, the determining component is its individual genetic status.
    Methods: The study groups included persons of Kazakh nationality which identify themselves, their biological parents, and biological grandparents on the maternal and paternal side as Kazakh. Research groups included 108 people at the age from 45 to 65 years of both sexes. Blood samples genotyping was carried out by PCR using highly specific TaqMan samples. Thermo Fisher cloud application was used for genotypes determining on the base of an automatic algorithm.
    Results: The article presents the results of the evaluation of gene polymorphisms associated with coronary artery restenosis in a population of Kazakh nationality. 3 SNPs were determined when searching for an association with stenting due to coronary artery thrombosis: rs7543130 (p=0.009324), rs6785930 (p=0.016858), rs7819412 (p=0.061325).
    Conclusion: Four polymorphisms associated with the risk of developing coronary heart disease were revealed during the study of polymorphisms among the people of the Kazakh population. Three SNPs were determined when searching for an association with stenting due to coronary artery thrombosis. It should be noted that the Bonferonni correction for multiple comparisons did not reveal significant polymorphisms associated with coronary artery disease, which requires further research with more quantity of samples.
    Language English
    Publishing date 2023-04-20
    Publishing country Iran
    Document type Journal Article
    ZDB-ID 2971933-1
    ISSN 2008-6172 ; 2008-6164
    ISSN (online) 2008-6172
    ISSN 2008-6164
    DOI 10.22088/cjim.14.2.249
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Application of MALDI-MS and Machine Learning to Detection of SARS-CoV-2 and non-SARS-CoV-2 Respiratory Infections.

    Yegorov, Sergey / Kadyrova, Irina / Korshukov, Ilya / Sultanbekova, Aidana / Barkhanskaya, Valentina / Bashirova, Tatyana / Zhunusov, Yerzhan / Li, Yevgeniya / Parakhina, Viktoriya / Kolesnichenko, Svetlana / Baiken, Yeldar / Matkarimov, Bakhyt / Vazenmiller, Dmitriy / Miller, Matthew S. / Hortelano, Gonzalo H. / Turmuhambetova, Anar / Chesca, Antonella E. / Babenko, Dmitriy

    medRxiv

    Abstract: Background: Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) could aid the diagnosis of acute respiratory infections (ARI) owing to its affordability and high-throughput capacity. MALDI-MS has been proposed for use on commonly ... ...

    Abstract Background: Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) could aid the diagnosis of acute respiratory infections (ARI) owing to its affordability and high-throughput capacity. MALDI-MS has been proposed for use on commonly available respiratory samples, without specialized sample preparation, making this technology especially attractive for implementation in low-resource regions. Here, we assessed the utility of MALDI-MS in differentiating SARS-CoV-2 versus non-COVID acute respiratory infections (NCARI) in a clinical lab setting of Kazakhstan. Methods: Nasopharyngeal swabs were collected from in- and outpatients with respiratory symptoms and from asymptomatic controls (AC) in 2020-2022. PCR was used to differentiate SARS-CoV-2+ and NCARI cases. MALDI-MS spectra were obtained for a total of 252 samples (115 SARS-CoV-2+, 98 NCARI and 39 AC) without specialized sample preparation. In our first sub-analysis, we followed a published protocol for peak preprocessing and Machine Learning (ML), trained on publicly available spectra from South American SARS-CoV-2+ and NCARI samples. In our second sub-analysis, we trained ML models on a peak intensity matrix representative of both South American (SA) and Kazakhstan (Kaz) samples. Results: Applying the established MALDI-MS pipeline "as is" resulted in a high detection rate for SARS-CoV-2+ samples (91.0%), but low accuracy for NCARI (48.0%) and AC (67.0%) by the top-performing random forest model. After re-training of the ML algorithms on the SA-Kaz peak intensity matrix, the accuracy of detection by the top-performing Support Vector Machine with radial basis function kernel model was at 88.0, 95.0 and 78% for the Kazakhstan SARS-CoV-2+, NCARI, and AC subjects, respectively with a SARS-CoV-2 vs. rest ROC AUC of 0.983 [0.958, 0.987]; a high differentiation accuracy was maintained for the South American SARS-CoV-2 and NCARI. Conclusions: MALDI-MS/ML is a feasible approach for the differentiation of ARI without a specialized sample preparation. The implementation of MALDI-MS/ML in a real clinical lab setting will necessitate continuous optimization to keep up with the rapidly evolving landscape of ARI.
    Keywords covid19
    Language English
    Publishing date 2023-09-02
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2023.08.31.23294891
    Database COVID19

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  3. Article: Disturbance of Antioxidant Enzymes and Purine Metabolism in the Ejaculate of Men Living in Disadvantaged Areas of Kyzylorda Region.

    Kislitskaya, Valentihna N / Kenzhin, Zhandos D / Kultanov, Berikbay Zh / Dosmagambetova, Raushan S / Turmuhambetova, Anar A

    Open access Macedonian journal of medical sciences

    2015  Volume 3, Issue 3, Page(s) 489–492

    Abstract: Aim: Objective of the study was to evaluate the state of the main indicators of antioxidant status and enzymes of purine metabolism in the germ cells of men living in the zone of ecological catastrophe Aral Sea region.: Methods: The criterion for ... ...

    Abstract Aim: Objective of the study was to evaluate the state of the main indicators of antioxidant status and enzymes of purine metabolism in the germ cells of men living in the zone of ecological catastrophe Aral Sea region.
    Methods: The criterion for inclusion is the stay of an adult in the Aral Sea area is not less than 5 years, employment in occupations with no more than 2 hazard class. Determination of the activity of adenosine deaminase (ADA) was conducted in semen by the method of Nemechek et al., 1993. Determination of the activity of catalase (CAT) was performed according by the method of Korolyuk et al., 1988.
    Results: Results of the study indicate a change in the activity of catalase and adenosine deaminase, due to increased levels of oxidative stress and the development of the pathological process.
    Conclusions: According to the results of study, it was put the influence of negative factors of the Aral Sea region in men's sperm of reproductive age gives to disability free-radical processes, that proves changing of ferments of ant oxidative protection Catalase and adenosine deaminase (ADA). This disturbance in men's sperm of reproductive age leading to increased level of oxidative stress and impaired activity of antioxidant enzymes and purine metabolism, responsible for the abnormal transmembrane and intracellular processes, reflecting the degree of imbalance of enzymes.
    Language English
    Publishing date 2015-07-10
    Publishing country North Macedonia
    Document type Journal Article
    ISSN 1857-9655
    ISSN 1857-9655
    DOI 10.3889/oamjms.2015.085
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Abstracts from the 8th International Congress of the Asia Pacific Society of Infection Control (APSIC): Bangkok, Thailand. 12-15 February 2017

    Sutthiruk, Nantanit / Botti, Mari / Considine, Julie / Driscoll, Andrea / Hutchinson, Ana / Malathum, Kumthorn / Cucunawangsih, Cucunawangsih / Wiwing, Veronica / Puspitasari, Vivien / Shanmugakani, Rathina Kumar / Akeda, Yukihiro / Kodera, Takuya / Santanirand, Pitak / Tomono, Kazunori / Yamanaka, Takayuki / Moriuchi, Hiroyuki / Kitajima, Hiroyuki / Horikoshi, Yuho / Lavrinenko, Alyona /
    Azizov, Ilya / Tabriz, Nurlan / Kozhamuratov, Margulan / Serbo, Yekatherine / Yang, Dahae / Lee, Woonhyoung / Bae, Il Kwon / Lee, Jae Hyun / Lee, Hyukmin / Kim, Jung Ok / Jeong, Seok Hoon / Lee, Kyungwon / Peremalo, Thiba / Madhavan, Priya / Hamzah, Sharina / Than, Leslie / Wong, Eng Hwa / Desa, Mohd Nasir Mohd / Ng, Kee Peng / Geronimo, Marionne / Tayzon, Maria Fe / Maño, Maria Jesusa / Chow, Angela / Hon, Pei-Yun / Win, Mar-Kyaw / Ang, Brenda / Leo, Yee-Sin / See, Tina / Marin, Rocio Alvarez / de Sousa, Marta Aires / Kieffer, Nicolas / Nordmann, Patrice / Poirel, Laurent / Laochareonsuk, Wison / Petyu, Sireekul / Wanasitchaiwat, Pawin / Thana, Sutasinee / Bunyaphongphan, Chollathip / Boonsomsuk, Woranan / Maneepongpermpoon, Pakpoom / Jamulitrat, Silom / Sureshkumar, Dorairajan / Supraja, Kalyanaraman / Sharmila, Soundararajan / Setiawan, Benny / Lumbuun, Nicolaski / Nakayama, Haruo / Ota, Toshiko / Shirane, Naoko / Matuoka, Chikako / Kodama, Kentaro / Ohtsuka, Masanobu / Bacolcol, Silverose Ann Andales / Velmonte, Melecia / Alde, Allan / Chavez, Keithleen / Esteban, Arlene Joy / Lee, Aisa Jensen / Hsieh, Tai-Chin / Shio-ShinJean / Huang, Huey-Jen / Huang, Shu-Ju / Huang, Yu-Huan / Cheng, Pei-Chen / Yu, Su-Fang / Tsao, Shih-Ming / Lee, Yuan-Ti / Li, Chien-Feng / Lu, Min-Chi / Pruetpongpun, Nattapol / Khawcharoenporn, Thana / Damronglerd, Pansachee / Suwantarat, Nuntra / Apisarnthanarak, Anucha / Rutjanawech, Sasinuch / Cushinotto, Lisa / McBride, Patty / Williams, Harding / Liu, Hans / Hang, Phan Thi / Anh, Dinh Pham Phuong / Le, Ngai / Khu, Dung / Nguyen, Lam / Castillo, Roel Beltran / Gopalakrishnan, Ram / Ramasubramanian, Venkatasubramanian / Sreevidya, Subramanian / Jayapradha, Ranganathan / Umetsu, Atsushi / Noda, Tetsuhiro / Hashimoto, Kenyuu / Hayashi, Akihiro / Kabashima, Mikie / Jadczak, Ursula / Elvelund, Knut / Johnsen, Marit / Borgen, Bente / Lingaas, Egil / Mao, Chia-Hua / Chang, Fu-Chieh / Liu, Chang-Pan / Chao, Ru-Hui / Chang, Fu-chieh / Liu, Chang-pan / Pawapotako, Junpen / Prasertpan, Chadanan / Malaihuan, Wantanee / Uirungroj, Phisit / Saenjum, Chalermpong / Ouirungrog, Teerapat / Borrell, Sue / Bass, Pauline / Worth, Leon / Xian-li, Zhao / Xiao-long, Li / Xue-hua, Yao / Wei, Ren / Zeng, Zhang Xia / Kong, Man Ying / Lai, Christopher Koon Chi / Lee, Suet Yi / Tsang, Ngai Chong / O’Donoghue, M. M. / Boost, M. V. / Suen, L. K. P. / Siu, G. K. / Mui, K. W. / Lai, C. K. C. / Tsang, D. N. C. / Sato, Yuka / Tateishi, Mariko / Mihashi, Mutsuko / Flor, Jose Paulo / Bautista, Marko / De Roxas, V. Jay / Vergara, Justine / Añonuevo, Nicolo Andrei / Kwek, Marion / Acuin, Jose / Sanchez, Anna Josea / Bathan, Avel / Jantan, Jamilah Binte / Guek, Chua Chor / Kian, Eu Chiow / Pirido, Pampe Anak / Aron, Nur Fadilah Binte Mohd / Estacio, Leah May / Palana, Francis Alvarez / Gracia, Michelle / Shamsuddin, Nur Syafiqah Binte / Castro, Kersten Timbad / Baloria, Madonna / Adam, Faezah Binte / Wei, Zhang / Fong, Poh Bee / Kalisvar, Marimuthu / Chuang, I-Ju / Yi-ChunCho / Chiu, Yu-Fen / Chen, Lung-Chih / Lin, Yi-Chun / Dong, Shao-Xing / Lee, Yi-Chieh / Kuan, Hui-Chen / Lin, Hsin-Hua / Chi, Chia-Chun / Lu, Chin-Te / Ya-Fen, Tang / Li-Hsiang, Su / Jien-Wei, Liu / Chao, Hsuehlan / ChangChien, PinRu / Chen, WeiFang / Lai, ChungHsu / Ara, Lutfe / Mowla, Syed Mohammad Niaz / Vashkar, Shaikh Mahmud Kamal / Chan, Wai Fong / ChunYau, Mabel Yin / LingChong, Karen Kam / OnLi, Tze / Kaur, Rajwinder / Yan, Ng Po / Chiu, Gloria Chor Shan / Cheung, Christina W. Y. / Ching, Patricia T. Y. / Ching, Radley H. C. / Lam, Conita H. S. / Kan, C. H. / Lee, Shirley S. Y. / Chen, C. P. / Chan, Regina F. Y. / Leung, Annie F. Y. / Wong, Isadora L. C. / Lam, S. S. / Chan, Queenie W. L. / Chan, Cecilia / Nematian, Seyed Sadeq Seyed / Palenik, Charles John / Askarian, Mehrdad / Hatam, Nahid / Nakamura, Itaru / Fujita, Hiroaki / Tsukimori, Ayaka / Kobayashi, Takehito / Sato, Akihiro / Fukushima, Shinji / Matsumoto, Tetsuya / De Roxas, V. James / De Roxas, V James / AndreiAñonuevo, Nicolo / Ho, Yeng May / Kum, Jia Qi / Poh, Bee Fong / Marimuthu, Kalisvar / Liu, Tzu-Yin / Chu, Sin-Man / Chen, Hui-Zhu / Chen, Tun-chieh / Chen, Yichun / Tsao, Ya-Ching / Skuntaniyom, Sumawadee / Tipluy, Pirawadee / Paengta, Sangwan / wongsaen, Ratchanee / thanomphan, Sutthiphun / Tariyo, Samettanet / Thongchuea, Buachan / Khamfu, Pattama / Thanomphan, Sutthiphan / Songtaweesin, Wipaporn Natalie / Anugulruengkit, Suvaporn / Samransamruajkit, Rujipat / Sosothikul, Darintr / Tansrijitdee, Ornanong / Nakphunsung, Anry / Srimuan, Patchareeyawan / Sophonphan, Jirachaya / ThanyaweePuthanakit / Payuk, Kunyanut / Picheansathian, Wilawan / Viseskul, Nongkran / DeNardo, Elizabeth / Leslie, Rachel / Cartner, Todd / Barbosa, Luciana / Werner, Heinz-Peter / Brill, Florian H. H. / Kawagoe, Julia Yaeko / De Nardo, Elizabeth / Wilson, Sarah Edmonds- / Macinga, David / Mays-Suko, Patricia / Duley, Collette / Hang, Tran Thi Thuy / Hanh, Tran Thi My / Gordon, Christopher / Durairaj, Roopa / Rohit, Anusha / Saravanakumar, Saujanya / Hemalatha, Jothymani / Hirano, Ryuichi / Sakamoto, Yuichi / Yamamoto, Shoji / Tachibana, Naoki / Miura, Miho / Hieda, Fumiyo / Sakai, Yoshiro / Watanabe, Hiroshi / Bacolcol, Silverose Ann / Chavez, Keitleen / Lim, Jia-Wei / Hein, Aung-Aung / Tin, Grace / Lim, Vanessa / Chao, Huwi-chun / Yeh, Chiu-Yin / Lo, Mei-feng / Piwpong, Chonlada / Rajborirug, Songyos / Preechawetchakul, Ploypailin / Pruekrattananapa, Yada / Sangsuwan, Tharntip / Wongsaen, Ratchanee / Paengta, Sungwan / Nilchon, Napatnun / Thanompan, Sutthipun / Tariyo, Samattanet / Kolesnichenko, Svetlana / Tishkambayev, Yerbol / Alibecov, Asylkhan / Serbo, Yekaterina / Nam, Youngwon / Park, Jae Hyeon / Hong, Yun Ji / Kim, Taek Soo / Park, Jeong Su / Park, Kyoung Un / Kim, Eui-Chong / Aziegbemhin, Samuel Abumhere / Enabulele, Onaiwu / Tung, Yao-Shen / Chen, An-Chi / Huang, Shen-Min / Yang, Yui-Yein / Wu, Li-Hung / Lin, Chin-cheng / Lien, Tzu Hao / Chang, Jia Hao / Huang, Yu Shan / Chen, Yi Shun / Sirilun, Sasithorn / Ouirungroj, Phisit / Trakulsomboon, Suwanna / Prasajak, Patcharee / Kwok, Maryanne W. N. / Ng, Lady S. H. / Wong, Lindy M. T. / Poon, Lenina S. L. / Lai, Mary K. L. / Cheng, Holly H. S. / Fong, S. K. / Leung, Cindy F. Y. / Hasegawa, Jumpei / Shirakawa, Hiroki / Wakai, Sachiko / Mieno, Makiko / Hatakeyama, Shuji / Deeudom, Manu / Tharavichitkul, Prasit / Chinniah, Terrence / Tan, Jackson / Prabu, Kavitha / Alam, Sartaj / Wynn, Aung Kyaw / Ahmad, Rashidah / Sidek, Amalina / Samsuddin, Dg Azizah / Ajis, Noraini / Ahmad, Aliyah / Magon, Susylawathi / Chu, Boon / Kuang, Jiqiu / Gao, Yan / Wang, Shoujun / Hao, Yunxiao / Liu, Rong / Li, Dongmei / Wang, Hui / Nishio, Hisanori / Mori, Hitomi / Morokuma, Yoshiko / Yamada, Takaaki / Kiyosuke, Makiko / Yasunaga, Sachie / Toyoda, Kazuhiro / Shimono, Nobuyuki / Babenko, Dmitriy / Turmuhambetova, Anar / Cheşcă, Antonella / Toleman, Mark A. / Turmuhambetova, Anar / Akhmaltdinova, Lyudmila L. / Magsakay, Mark Albert / Macatibag, Angelo / Lerios, Jeannica Kriselle / Lavrineko, Alyona / Babenko, Dmitry / Sheck, Eugene / Edelstein, Mikhail / Li, Lih-Yue / Chan, Chiung-Wen / Pan, Hui-Chuan / Vanishakije, Wipa / Jaikampun, Warisra / Li, Su-Yin / Li, Jian-Feng / Wu, Yu-Ping / Lin, Chiao-Hui / Chang, Ping-Chin / Tariyo, Samatanet / Thanompan, Suttsiphan / Sukkra, Suchada / Zaman, Khalequ / Zaman, Sheikh Farzana / Zaman, Farzana / Aziz, Asma / Faisal, Sayeed-Bin / Traskine, Magali / Ruiz-Guiñazú, Javier / Borys, Dorota / Lam, Wendy Wai Yee / Chow, May / Choy, Lucy / Kam, Joseph / Salleh, Sharifah Azura / Yacob, Razila / Yusof, Siti Rokiah / Jalil, Nordiah Awang / Millan, Maria Lourdes / Acuin, Jose Lito / Velmonte, Melecia A. / Bacolcol, Silverose Ann A. / Ting, Ching-I / Dissayasriroj, Sunisa / Chinniah, Terrence Rohan / DiniSuhaimi, Jauharatud / Mirasin, Aizzuddin / Morni, Nurul / Samsuddin, Azizah / AbuBakar, Amalina / Shafiee, Amanie / Safar, Julaini / Annie, Leung / Ling, Fung Yuk / Edna, Lau / Kristine, Luk / Shinomiya, Satoshi / Yamamoto, Kumiko / Kjiwara, Kayoko / Yamaguchi, Mitsuhiro / Zhang, Wei / Poh, Bee-Fong / Chan, Ming-Chin / Wang, Chih-Chien / Huang, Huan-Yu / Lai, Chiung-Ling / Kosol, Sajeerat / Sakolwirat, Wantana / Paepong, Patchanee / Jansanga, Sawalee / Jaisamoot, Pattarin / Thongnuanual, Nuttha / Srithong, Chittima / Somsakul, Somporn / Plongpunth, Sutima / Punpop, Mukkapon / Malathum, Porntip / Peautiwat, Kulada / boon kirdram, Nattawipa / Klunklin, Pimpaporn / Samethadka, Geetha / Suzuki, Naoko / Asada, Hitomi / Katayama, Masao / Komano, Atsushi / Watanabe, Hidehiro / Seo, Hye Kyung / Hwang, Joo-Hee / Shin, Myoung Jin / Kim, Su Young / Kim, Eu Suk / Song, Kyoung-Ho / Kim, Hong Bin / Un, Lai-Si / Vong, Choi-Ian / Koh, Jocelyn / Agustinus, Sherly / Hassan, Rozita Bte Abu / Thinn, Yin Phyu / Ng, Benjamin / Tun, Soe Pyae / Ha, Su Mon Thi / Xiaoting, Xue / Li, Lin / Chuang, Leyland / Niroshika, Attanayaka Mudiyanselage Chulani / Perera, Kaluarachchige Anoma Kaluarachchi / Fernando, Dimingo Kankanamalage Diana Grace / Hemamala, Bodhipakshage Rohini / Yeh, Chiu-yin / Yang, Hui-Chun / Chiu, Hsiang-Ju / Shih, Ya-Ling / Chien, Yu-Shan / Lin, Wan-Yi / Pan, Chia-Yun / Chang, Ying-Yun / Yea, Chiu-Yuch / Chu, Ming-Hsien / Lee, Li-Chu / Yu-Hsiu, Lin / Siao-Pei, Guo / Pak-On, Leung / Mei-Fe, Sie / Jyh-Jou, Chen / Yong-Yuan, Chang / Kuo, Shu-Yuan / Lin, Yu-Hsiu / Zhang, Ji-Sheng / Leung, Pak-On / Sie, Mei-Fe / Chen, Jyh-Jou / Chen, Yan-Ru / Chen, Ying-Ling / Taou, Chi-Fen / Chen, Hsiao-Shan / Tang, Hung-Jen / Chen, Shin Yu / Chen, Yin Yin / Der Wang, Fu / Shih, Tzu-Ping / Chen, Chin-Yu / Chen, Su-Jung / Wu, Mei-chi / Yang, Wan-ju / Chou, Mei-ling / Yu, Man-Ling / Li, Li-Chu / Chu, Cheng-Wei / Tsou, Wen-Hao / Wu, Wen-Chih / Cheng, Wen-Chi / Sun, Cho-Ching / Lu, Shu-Hua / Yang, Hsin-Ling / Lu, Cheng-Yu / Hirunprapakorn, Nitchawan / Apivanich, Sirilux / Pornmee, Ttipakorn / Beowsomboon, Chonnikarnt / Kumkoom, Itthaporn / Kasatpibal, Nongyao / Chitreecheur, Jittaporn / Whitney, JoAnne D. / Saokaew, Surasak / Kengkla, Kirati / Heitkemper, Margaret M. / Muntajit, Thanomvong / Apivanich, Siriluk / Phan, Hang Thi / Dinh, Anh Pham Phuong / Nguyen, Tuyet Thi Kim

    Antimicrob Resist Infect Control

    Keywords covid19
    Publisher PMC
    Document type Article ; Online
    DOI 10.1186/s13756-017-0176-1
    Database COVID19

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