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  1. Article: Copper(I/II)-Promoted Diverse Imidazo[1,2-α]pyridine Synthesis on Solid-Phase Bound DNA Oligonucleotides for Encoded Library Design

    Potowski, Marco / Lüttig, Ricarda / Vakalopoulos, Alexandros / Brunschweiger, Andreas

    Organic letters. 2021 June 28, v. 23, no. 14

    2021  

    Abstract: DNA-encoded libraries designed around heterocyclic scaffolds have proven highly productive in target-based screening. Here, we show the synthesis of imidazopyridines on a controlled pore glass-coupled DNA oligonucleotide for solid phase-initiated encoded ...

    Abstract DNA-encoded libraries designed around heterocyclic scaffolds have proven highly productive in target-based screening. Here, we show the synthesis of imidazopyridines on a controlled pore glass-coupled DNA oligonucleotide for solid phase-initiated encoded library synthesis. The target compounds were synthesized by a variant of the A3 coupling reaction from aminopyridines, alkynes, and aldehydes promoted by copper(I/II) and furnished diverse substituted scaffolds with functionalities for library design. Although proceeding under forcing conditions, it produced minimal DNA damage.
    Keywords DNA ; DNA damage ; alkynes ; copper ; oligonucleotides ; pyridines
    Language English
    Dates of publication 2021-0628
    Size p. 5480-5484.
    Publishing place American Chemical Society
    Document type Article
    ISSN 1523-7052
    DOI 10.1021/acs.orglett.1c01834
    Database NAL-Catalogue (AGRICOLA)

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  2. Article ; Online: Copper(I/II)-Promoted Diverse Imidazo[1,2-α]pyridine Synthesis on Solid-Phase Bound DNA Oligonucleotides for Encoded Library Design.

    Potowski, Marco / Lüttig, Ricarda / Vakalopoulos, Alexandros / Brunschweiger, Andreas

    Organic letters

    2021  Volume 23, Issue 14, Page(s) 5480–5484

    Abstract: DNA-encoded libraries designed around heterocyclic scaffolds have proven highly productive in target-based screening. Here, we show the synthesis of imidazopyridines on a controlled pore glass-coupled DNA oligonucleotide for solid phase-initiated encoded ...

    Abstract DNA-encoded libraries designed around heterocyclic scaffolds have proven highly productive in target-based screening. Here, we show the synthesis of imidazopyridines on a controlled pore glass-coupled DNA oligonucleotide for solid phase-initiated encoded library synthesis. The target compounds were synthesized by a variant of the A3 coupling reaction from aminopyridines, alkynes, and aldehydes promoted by copper(I/II) and furnished diverse substituted scaffolds with functionalities for library design. Although proceeding under forcing conditions, it produced minimal DNA damage.
    MeSH term(s) Alkynes/chemistry ; Biochemical Phenomena ; Copper/chemistry ; Gene Library ; Imidazoles/chemical synthesis ; Imidazoles/chemistry ; Molecular Structure ; Oligonucleotides/chemistry ; Pyridines/chemical synthesis ; Pyridines/chemistry ; Solid-Phase Synthesis Techniques
    Chemical Substances Alkynes ; Imidazoles ; Oligonucleotides ; Pyridines ; imidazopyridine ; Copper (789U1901C5)
    Language English
    Publishing date 2021-06-28
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1523-7052
    ISSN (online) 1523-7052
    DOI 10.1021/acs.orglett.1c01834
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Chemically Stabilized DNA Barcodes for DNA-Encoded Chemistry.

    Potowski, Marco / Kunig, Verena B K / Eberlein, Lukas / Vakalopoulos, Alexandros / Kast, Stefan M / Brunschweiger, Andreas

    Angewandte Chemie (International ed. in English)

    2021  Volume 60, Issue 36, Page(s) 19744–19749

    Abstract: DNA-encoded compound libraries are a widely used small molecule screening technology. One important aim in library design is the coverage of chemical space through structurally diverse molecules. Yet, the chemical reactivity of native DNA barcodes limits ...

    Abstract DNA-encoded compound libraries are a widely used small molecule screening technology. One important aim in library design is the coverage of chemical space through structurally diverse molecules. Yet, the chemical reactivity of native DNA barcodes limits the toolbox of reactions for library design. Substituting the chemically vulnerable purines by 7-deazaadenine, which exhibits tautomerization stability similar to natural adenine with respect to the formation of stable Watson-Crick pairs, yielded ligation-competent, amplifiable, and readable DNA barcodes for encoded chemistry with enhanced stability against protic acid- and metal ion-promoted depurination. The barcode stability allowed for straightforward translation of 16 exemplary reactions that included isocyanide multicomponent reactions, acid-promoted Pictet-Spengler and Biginelli reactions, and metal-promoted pyrazole syntheses on controlled pore glass-coupled barcodes for diverse DEL design. The Boc protective group of reaction products offered a convenient handle for encoded compound purification.
    Language English
    Publishing date 2021-08-03
    Publishing country Germany
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2011836-3
    ISSN 1521-3773 ; 1433-7851
    ISSN (online) 1521-3773
    ISSN 1433-7851
    DOI 10.1002/anie.202104348
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Soluble guanylate cyclase stimulators and their potential use: a patent review.

    Sandner, Peter / Vakalopoulos, Alexandros / Hahn, Michael G / Stasch, Johannes-Peter / Follmann, Markus

    Expert opinion on therapeutic patents

    2021  Volume 31, Issue 3, Page(s) 203–222

    Abstract: ... ...

    Abstract Introduction
    MeSH term(s) Animals ; Cardiovascular Diseases/drug therapy ; Cardiovascular Diseases/enzymology ; Drug Development ; Enzyme Activators/chemistry ; Enzyme Activators/pharmacology ; Guanylyl Cyclase C Agonists/chemistry ; Guanylyl Cyclase C Agonists/pharmacology ; Humans ; Patents as Topic ; Soluble Guanylyl Cyclase/drug effects ; Soluble Guanylyl Cyclase/metabolism
    Chemical Substances Enzyme Activators ; Guanylyl Cyclase C Agonists ; Soluble Guanylyl Cyclase (EC 4.6.1.2)
    Language English
    Publishing date 2021-01-04
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1186201-4
    ISSN 1744-7674 ; 0962-2594 ; 1354-3776
    ISSN (online) 1744-7674
    ISSN 0962-2594 ; 1354-3776
    DOI 10.1080/13543776.2021.1866538
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Investigations Into Chemically Stabilized Four-Letter DNA for DNA-Encoded Chemistry.

    Potowski, Marco / Kunig, Verena B K / Eberlein, Lukas / Škopić, Mateja Klika / Vakalopoulos, Alexandros / Kast, Stefan M / Brunschweiger, Andreas

    Frontiers in chemistry

    2022  Volume 10, Page(s) 894563

    Abstract: DNA-encoded libraries are a prime technology for target-based small molecule screening. Native DNA used as genetic compound barcode is chemically vulnerable under many reaction conditions. DNA barcodes that are composed of pyrimidine nucleobases, 7- ... ...

    Abstract DNA-encoded libraries are a prime technology for target-based small molecule screening. Native DNA used as genetic compound barcode is chemically vulnerable under many reaction conditions. DNA barcodes that are composed of pyrimidine nucleobases, 7-deazaadenine, and 7-deaza-8-azaguanine have been investigated for their suitability for encoded chemistry both experimentally and computationally. These four-letter barcodes were readily ligated by T4 ligation, amplifiable by Taq polymerase, and the resultant amplicons were correctly sequenced. Chemical stability profiling showed a superior chemical stability compared to native DNA, though higher susceptibility to depurination than a three-letter code based on pyrimidine DNA and 7-deazaadenine.
    Language English
    Publishing date 2022-06-09
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2711776-5
    ISSN 2296-2646
    ISSN 2296-2646
    DOI 10.3389/fchem.2022.894563
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Identification and characterization of the new generation soluble guanylate cyclase stimulator BAY-747 designed for the treatment of resistant hypertension.

    Wunder, Frank / Stasch, Johannes-Peter / Knorr, Andreas / Mondritzki, Thomas / Brockschnieder, Damian / Becker-Pelster, Eva-Maria / Sandner, Peter / Tinel, Hanna / Redlich, Gorden / Hartung, Ingo V / Vakalopoulos, Alexandros / Follmann, Markus

    British journal of pharmacology

    2023  Volume 180, Issue 19, Page(s) 2500–2513

    Abstract: Background and purpose: First-generation soluble guanylate cyclase (sGC) stimulators have shown clinical benefit in pulmonary hypertension (riociguat) and chronic heart failure (vericiguat). However, given the broad therapeutic opportunities for sGC ... ...

    Abstract Background and purpose: First-generation soluble guanylate cyclase (sGC) stimulators have shown clinical benefit in pulmonary hypertension (riociguat) and chronic heart failure (vericiguat). However, given the broad therapeutic opportunities for sGC stimulators, tailored molecules for distinct indications are required.
    Experimental approach: We report the high-throughput screening (HTS)-based discovery of a second generation of sGC stimulators from a novel imidazo[1,2-a]pyridine lead series. An intense medicinal chemistry programme resulted in the discovery of the sGC stimulator BAY 1165747 (BAY-747). The pharmacokinetic profile of BAY-747 was determined in different species, and it was broadly characterized in pharmacological model systems relevant for vasodilatation and hypertension.
    Key results: BAY-747 is a highly potent sGC stimulator in vitro. In addition, BAY-747 showed an excellent pharmacokinetic profile with long half-life and low peak-to-trough ratio. BAY-747 was investigated in experimental in vivo models of malignant and resistant hypertension (rHT). In spontaneously hypertensive (SH) rats, BAY-747 caused a dose-related and long-lasting decrease in mean arterial blood pressure (MAP). Oral treatment over 12 days resulted in a persistent decrease. BAY-747 provided additional benefit when dosed on top of losartan, amlodipine or spironolactone and even on top of triple combinations of frequently used antihypertensive drugs. In a new canine model of rHT, BAY-747 caused a dose-related and long-lasting (>6 h) MAP decrease.
    Conclusion and implications: BAY-747 is a potent, orally available sGC stimulator. BAY-747 shows long-acting pharmacodynamic effects with a very low peak-to-trough ratio. BAY-747 could be a treatment alternative for patients with hypertension, especially those not responding to standard-of-care therapy.
    MeSH term(s) Rats ; Animals ; Dogs ; Soluble Guanylyl Cyclase ; Hypertension/drug therapy ; Hypertension, Pulmonary/drug therapy ; Heart Failure/drug therapy ; Vasodilator Agents/therapeutic use
    Chemical Substances Soluble Guanylyl Cyclase (EC 4.6.1.2) ; 2-(2-Chloro-4-(methylsulfonyl)-3-((2,2,2-trifluoroethoxy)methyl)benzoyl)-1,3-cyclohexanedione (BAY 747) ; Vasodilator Agents
    Language English
    Publishing date 2023-06-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 80081-8
    ISSN 1476-5381 ; 0007-1188
    ISSN (online) 1476-5381
    ISSN 0007-1188
    DOI 10.1111/bph.16142
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Book ; Online ; Thesis: Asymmetrische Fragmentsynthesen des Bryostatins (C1-C16 und C19-C27), Pederins (C10-C17), Leucascandrolids (C1-C9), Hennoxazols (C2-C8) und Macrolactins (C11-C17)

    Vakalopoulos, Alexandros

    neuartige Entschützungsmethoden von SEM-Ethern und Dithianen

    2000  

    Abstract: Bryostatins, synthesis of natural products and analogues, deprotection ... ...

    Author's details von Alexandros Vakalopoulos
    Abstract Bryostatins, synthesis of natural products and analogues, deprotection methods
    Language German
    Size Online-Ressource
    Edition [Elektronische Ressource]
    Publisher Universitätsbibliothek u. Technische Informationsbibliothek
    Publishing place Hannover
    Document type Book ; Online ; Thesis
    Thesis / German Habilitation thesis Univ., Diss.--Hannover, 2000
    Database Former special subject collection: coastal and deep sea fishing

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  8. Book ; Online ; Thesis: Asymmetrische Fragmentsynthesen des Bryostatins (C1 - C16 und C19 - C27), Pederins (C10 - C17), Leucascandrolids (C1 - C9), Hennoxazols (C2 - C8) und Macrolactins (C11 - C17)

    Vakalopoulos, Alexandros

    neuartige Entschützungsmethoden von SEM-Ethern und Dithianen

    2000  

    Author's details von Alexandros Vakalopoulos
    Keywords Asymmetrische Synthese ; Partialstruktur ; Schutzgruppe ; Naturstoff ; Bryostatine
    Language German
    Size Online-Ressource
    Edition [Elektronische Ressource]
    Document type Book ; Online ; Thesis
    Thesis / German Habilitation thesis Univ., Diss--Hannover, 2000
    Database Former special subject collection: coastal and deep sea fishing

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  9. Book ; Online ; Thesis: Asymmetrische Fragmentsynthesen des Bryostatins (C1-C16 und C19-C27), Pederins (C10-C17), Leucascandrolids (C1-C9), Hennoxazols (C2-C8) und Macrolactins (C11-C17)

    Vakalopoulos, Alexandros

    neuartige Entschützungsmethoden von SEM-Ethern und Dithianen

    2000  

    Abstract: Bryostatins, synthesis of natural products and analogues, deprotection ... ...

    Author's details von Alexandros Vakalopoulos
    Abstract Bryostatins, synthesis of natural products and analogues, deprotection methods
    Language German
    Size Online-Ressource
    Edition [Elektronische Ressource]
    Publisher Universitätsbibliothek u. Technische Informationsbibliothek
    Publishing place Hannover
    Document type Book ; Online ; Thesis
    Thesis / German Habilitation thesis Univ., Diss.--Hannover, 2000
    Database Library catalogue of the German National Library of Science and Technology (TIB), Hannover

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  10. Article ; Online: Assessing the Use of the sGC Stimulator BAY-747, as a Potential Treatment for Duchenne Muscular Dystrophy.

    Krishnan, Shalini Murali / Nordlohne, Johannes / Dietz, Lisa / Vakalopoulos, Alexandros / Haning, Petra / Hartmann, Elke / Seifert, Roland / Hüser, Jörg / Mathar, Ilka / Sandner, Peter

    International journal of molecular sciences

    2021  Volume 22, Issue 15

    Abstract: Duchenne muscular dystrophy (DMD) is a severe and progressive muscle wasting disorder, affecting one in 3500 to 5000 boys worldwide. The NO-sGC-cGMP pathway plays an important role in skeletal muscle function, primarily by improving blood flow and oxygen ...

    Abstract Duchenne muscular dystrophy (DMD) is a severe and progressive muscle wasting disorder, affecting one in 3500 to 5000 boys worldwide. The NO-sGC-cGMP pathway plays an important role in skeletal muscle function, primarily by improving blood flow and oxygen supply to the muscles during exercise. In fact, PDE5 inhibitors have previously been investigated as a potential therapy for DMD, however, a large-scale Phase III clinical trial did not meet its primary endpoint. Since the efficacy of PDE5i is dependent on sufficient endogenous NO production, which might be impaired in DMD, we investigated if NO-independent sGC stimulators, could have therapeutic benefits in a mouse model of DMD. Male mdx/mTR
    MeSH term(s) Animals ; Enzyme Activators/pharmacology ; Mice ; Mice, Inbred mdx ; Mice, Transgenic ; Muscle, Skeletal/enzymology ; Muscle, Skeletal/pathology ; Muscular Dystrophy, Duchenne/drug therapy ; Muscular Dystrophy, Duchenne/enzymology ; Muscular Dystrophy, Duchenne/genetics ; Muscular Dystrophy, Duchenne/pathology ; Soluble Guanylyl Cyclase/metabolism
    Chemical Substances Enzyme Activators ; Soluble Guanylyl Cyclase (EC 4.6.1.2)
    Language English
    Publishing date 2021-07-27
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms22158016
    Database MEDical Literature Analysis and Retrieval System OnLINE

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