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  1. Article ; Online: Gender-biased evaluation or actual differences? Fairness in the evaluation of faculty teaching.

    Valencia, Edgar

    Higher education

    2021  Volume 83, Issue 6, Page(s) 1315–1333

    Abstract: How do we know if a faculty teaching evaluation is biased? ...

    Abstract How do we know if a faculty teaching evaluation is biased?
    Language English
    Publishing date 2021-08-13
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2015566-9
    ISSN 1573-174X ; 0018-1560
    ISSN (online) 1573-174X
    ISSN 0018-1560
    DOI 10.1007/s10734-021-00744-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Ventricular Assist Devices: Improving the Lives of Children With Heart Failure.

    Valencia, Eleonore / Nasr, Viviane G

    Journal of cardiothoracic and vascular anesthesia

    2022  Volume 36, Issue 6, Page(s) 1509–1510

    MeSH term(s) Child ; Heart Failure/surgery ; Heart Transplantation ; Heart Ventricles ; Heart-Assist Devices ; Humans
    Language English
    Publishing date 2022-01-23
    Publishing country United States
    Document type Editorial ; Research Support, Non-U.S. Gov't
    ZDB-ID 1067317-9
    ISSN 1532-8422 ; 1053-0770
    ISSN (online) 1532-8422
    ISSN 1053-0770
    DOI 10.1053/j.jvca.2022.01.023
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Mock community taxonomic classification performance of publicly available shotgun metagenomics pipelines.

    Valencia, E Michael / Maki, Katherine A / Dootz, Jennifer N / Barb, Jennifer J

    Scientific data

    2024  Volume 11, Issue 1, Page(s) 81

    Abstract: Shotgun metagenomic sequencing comprehensively samples the DNA of a microbial sample. Choosing the best bioinformatics processing package can be daunting due to the wide variety of tools available. Here, we assessed publicly available shotgun ... ...

    Abstract Shotgun metagenomic sequencing comprehensively samples the DNA of a microbial sample. Choosing the best bioinformatics processing package can be daunting due to the wide variety of tools available. Here, we assessed publicly available shotgun metagenomics processing packages/pipelines including bioBakery, Just a Microbiology System (JAMS), Whole metaGenome Sequence Assembly V2 (WGSA2), and Woltka using 19 publicly available mock community samples and a set of five constructed pathogenic gut microbiome samples. Also included is a workflow for labelling bacterial scientific names with NCBI taxonomy identifiers for better resolution in assessing results. The Aitchison distance, a sensitivity metric, and total False Positive Relative Abundance were used for accuracy assessments for all pipelines and mock samples. Overall, bioBakery4 performed the best with most of the accuracy metrics, while JAMS and WGSA2, had the highest sensitivities. Furthermore, bioBakery is commonly used and only requires a basic knowledge of command line usage. This work provides an unbiased assessment of shotgun metagenomics packages and presents results assessing the performance of the packages using mock community sequence data.
    MeSH term(s) Bacteria/genetics ; Gastrointestinal Microbiome ; Metagenome ; Metagenomics/methods ; Sequence Analysis, DNA/methods
    Language English
    Publishing date 2024-01-17
    Publishing country England
    Document type Dataset ; Journal Article
    ZDB-ID 2775191-0
    ISSN 2052-4463 ; 2052-4463
    ISSN (online) 2052-4463
    ISSN 2052-4463
    DOI 10.1038/s41597-023-02877-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Inpatient Resource Utilization for Hypoplastic Left Heart Syndrome from Birth Through Fontan.

    Kuntz, Michael / Valencia, Eleonore / Staffa, Steven / Nasr, Viviane

    Pediatric cardiology

    2023  Volume 45, Issue 3, Page(s) 623–631

    Abstract: Completing 3-stage palliation for hypoplastic left heart syndrome requires significant resources. An analysis of recent data has not been performed. We aimed to determine total charges necessary to complete all 3 stages of single-ventricle palliation, ... ...

    Abstract Completing 3-stage palliation for hypoplastic left heart syndrome requires significant resources. An analysis of recent data has not been performed. We aimed to determine total charges necessary to complete all 3 stages of single-ventricle palliation, including interstage encounters. We also aimed to determine overall resource utilization, including hospital days, interstage admissions, and interstage procedures. We performed a retrospective cohort study using data from the Pediatric Health Information System database between 2016 and 2021, including all patients who completed 3-stage palliation for hypoplastic left heart syndrome. We identified 199 patients who underwent 3-stage palliation of hypoplastic left heart syndrome between 2016 and 2021. Median total adjusted charges (interquartile range, IQR) over the course of 3-stage palliation were $1,475,800 ($1,028,900-2,191,700). Median adjusted charges (IQR) for stage 1, 2, and 3 hospitalizations were $604,300 ($419,000-891,400), $234,000 ($164,300-370,800), and $256,260 ($178,300-345,900), respectively. Median hospital length of stay (IQR) for stages 1, 2, and 3 was 36 (26,53), 9 (6,17), and 10 (7,14) days, respectively. Pulmonary artery stenosis was the most common admitting diagnosis for interstage hospitalizations (3.4% of hospitalizations). Cardiac catheterization (24.1% of procedures) and feeding tube placement (10.0% of procedures) were the most common principal procedures during interstage hospitalizations. Total inpatient charges incurred throughout 3-stage palliation of hypoplastic left heart syndrome are substantial and have risen since prior studies. Gastrointestinal comorbidities and feeding optimization contribute considerably to this resource utilization.
    MeSH term(s) Humans ; Child ; Infant ; Retrospective Studies ; Inpatients ; Hypoplastic Left Heart Syndrome/surgery ; Hypoplastic Left Heart Syndrome/diagnosis ; Length of Stay ; Hospitalization ; Palliative Care/methods ; Treatment Outcome ; Norwood Procedures/methods
    Language English
    Publishing date 2023-12-30
    Publishing country United States
    Document type Journal Article
    ZDB-ID 800857-7
    ISSN 1432-1971 ; 0172-0643
    ISSN (online) 1432-1971
    ISSN 0172-0643
    DOI 10.1007/s00246-023-03372-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: N

    Li, Chengyi / Valencia, Enrique / Shi, Yan / Zhou, Guiyao / Li, Xilai

    Frontiers in microbiology

    2023  Volume 14, Page(s) 1240634

    Abstract: Introduction: Soil bacteria play a crucial role in the terrestrial nitrogen (N) cycle by fixing atmospheric N: Methods: We conducted an N addition field experiment at three levels (2, 5, and 10 g N·m: Results: There were significant differences in ...

    Abstract Introduction: Soil bacteria play a crucial role in the terrestrial nitrogen (N) cycle by fixing atmospheric N
    Methods: We conducted an N addition field experiment at three levels (2, 5, and 10 g N·m
    Results: There were significant differences in the dominant bacterial species between the two slopes. The Chao1 index, species richness, and beta diversity of NFB did not differ significantly between slopes, but the Shannon index did. Interestingly, N addition had no effect on the diversity of NFB or the abundance of dominant bacteria. However, we did observe a significant change in some low-abundance NFB. The community composition and diversity of NFB were significantly positively correlated with slope and soil physicochemical properties (e.g., total potassium, pH, and total nitrogen).
    Conclusions: Our study highlights the variation in NFB communities among different slopes in degraded alpine meadows and their resilience to exogenous N addition. Our results also underscore the importance of considering the effects of micro-topography on soil microbial communities in future studies of alpine ecosystems.
    Language English
    Publishing date 2023-09-15
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2023.1240634
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Autism attenuates the perception of the mind-body divide.

    Berent, Iris / Theodore, Rachel M / Valencia, Erick

    Proceedings of the National Academy of Sciences of the United States of America

    2022  Volume 119, Issue 49, Page(s) e2211628119

    Abstract: People are intuitive Dualists-they tacitly consider the mind as ethereal, distinct from the body. Here we ask whether Dualism emerges naturally from the conflicting core principles that guide reasoning about objects, on the one hand, and about the minds ... ...

    Abstract People are intuitive Dualists-they tacitly consider the mind as ethereal, distinct from the body. Here we ask whether Dualism emerges naturally from the conflicting core principles that guide reasoning about objects, on the one hand, and about the minds of agents (theory of mind, ToM), on the other. To address this question, we explore Dualist reasoning in autism spectrum disorder (ASD)-a congenital disorder known to compromise ToM. If Dualism arises from ToM, then ASD ought to attenuate Dualism and promote Physicalism. In line with this prediction, Experiment 1 shows that, compared to controls, people with ASD are more likely to view psychological traits as embodied-as likely to manifest in a replica of one's body. Experiment 2 demonstrates that, unlike controls, people with ASD do not consider thoughts as disembodied-as persistent in the afterlife (upon the body's demise). If ASD promotes the perception of the psyche as embodied, and if (per Essentialism) embodiment suggests innateness, then ASD should further promote Nativism-this bias is shown in Experiment 3. Finally, Experiment 4 demonstrates that, in neurotypical (NT) participants, difficulties with ToM correlate with Physicalism. These results are the first to show that ASD attenuates Dualist reasoning and to link Dualism to ToM. These conclusions suggest that the mind-body distinction might be natural for people to entertain.
    MeSH term(s) Humans ; Autistic Disorder ; Autism Spectrum Disorder ; Problem Solving ; Anesthetics, General ; Perception
    Chemical Substances Anesthetics, General
    Language English
    Publishing date 2022-11-30
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 209104-5
    ISSN 1091-6490 ; 0027-8424
    ISSN (online) 1091-6490
    ISSN 0027-8424
    DOI 10.1073/pnas.2211628119
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Conference proceedings ; Online: Systems approach to scaling

    Woltering, Lennart / Valencia, Eva

    2022  

    Keywords resilience ; agriculture ; research ; scaling up
    Language English
    Publishing date 2022-12-08T13:44:58Z
    Publisher CGIAR System Organization
    Publishing country fr
    Document type Conference proceedings ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Is Methadone an Opioid Sparing Strategy?

    Valencia, Eleonore / Nasr, Viviane G

    Journal of cardiothoracic and vascular anesthesia

    2019  Volume 34, Issue 2, Page(s) 342–343

    MeSH term(s) Analgesics, Opioid ; Cohort Studies ; Humans ; Methadone ; Opioid-Related Disorders
    Chemical Substances Analgesics, Opioid ; Methadone (UC6VBE7V1Z)
    Language English
    Publishing date 2019-11-16
    Publishing country United States
    Document type Editorial ; Comment
    ZDB-ID 1067317-9
    ISSN 1532-8422 ; 1053-0770
    ISSN (online) 1532-8422
    ISSN 1053-0770
    DOI 10.1053/j.jvca.2019.11.016
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Updates in Pediatric Extracorporeal Membrane Oxygenation.

    Valencia, Eleonore / Nasr, Viviane G

    Journal of cardiothoracic and vascular anesthesia

    2019  Volume 34, Issue 5, Page(s) 1309–1323

    Abstract: Extracorporeal membrane oxygenation is an increasingly used mode of life support for patients with cardiac and/or respiratory failure refractory to conventional therapy. This review provides a synopsis of the evolution of extracorporeal life support in ... ...

    Abstract Extracorporeal membrane oxygenation is an increasingly used mode of life support for patients with cardiac and/or respiratory failure refractory to conventional therapy. This review provides a synopsis of the evolution of extracorporeal life support in neonates, infants, and children and offers a framework for areas in need of research. Specific aspects addressed are the changing epidemiology; technologic advancements in extracorporeal membrane oxygenation circuitry; the current status and future direction of anticoagulation management; sedative and analgesic strategies; and outcomes, with special attention to the lessons learned from neonatal survivors.
    MeSH term(s) Blood Coagulation ; Child ; Extracorporeal Membrane Oxygenation/adverse effects ; Humans ; Infant ; Infant, Newborn ; Respiratory Insufficiency/therapy
    Language English
    Publishing date 2019-09-12
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 1067317-9
    ISSN 1532-8422 ; 1053-0770
    ISSN (online) 1532-8422
    ISSN 1053-0770
    DOI 10.1053/j.jvca.2019.09.006
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Energetic Demands Regulate Sleep-Wake Rhythm Circuit Development.

    Poe, Amy R / Zhu, Lucy / Tang, Si Hao / Valencia, Ella / Kayser, Matthew S

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Sleep and feeding patterns lack a clear daily rhythm during early life. As diurnal animals mature, feeding is consolidated to the day and sleep to the night. Circadian sleep patterns begin with formation of a circuit connecting the central clock to ... ...

    Abstract Sleep and feeding patterns lack a clear daily rhythm during early life. As diurnal animals mature, feeding is consolidated to the day and sleep to the night. Circadian sleep patterns begin with formation of a circuit connecting the central clock to arousal output neurons; emergence of circadian sleep also enables long-term memory (LTM). However, the cues that trigger the development of this clock-arousal circuit are unknown. Here, we identify a role for nutritional status in driving sleep-wake rhythm development in
    Language English
    Publishing date 2023-09-22
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.09.19.558472
    Database MEDical Literature Analysis and Retrieval System OnLINE

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