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Article ; Online: Flexible alignment in 3D and its applications

Kalaszi A / Imre G / Vargyas M

Journal of Cheminformatics, Vol 3, Iss Suppl 1, p P

2011 Volume 30

Keywords	Information technology ; T58.5-58.64 ; Chemistry ; QD1-999
Language	English
Publishing date	2011-04-01T00:00:00Z
Publisher	BMC
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article: Novel treatment of conformational flexibility using interval analysis

Szabo / Vargyas / Johnson

Journal of chemical information and computer sciences

2000 Volume 40, Issue 2, Page(s) 339–346

Abstract: A revolutionary new flexible conformational search technique is presented together with its application to geometrical docking. The algorithm is guaranteed to find all (even an infinite number of) solutions in a continuous manner. Examples are given ... ...

Abstract	A revolutionary new flexible conformational search technique is presented together with its application to geometrical docking. The algorithm is guaranteed to find all (even an infinite number of) solutions in a continuous manner. Examples are given using 2-(4'-amidinophenyl)pyruvate (APPA) docked to trypsin. Other potential applications are briefly discussed.
Language	English
Publishing date	2000-03
Publishing country	United States
Document type	Journal Article
ZDB-ID	190019-5
ISSN	0095-2338
ISSN	0095-2338
DOI	10.1021/ci990105p
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Article ; Online: PBEQ-Solver for online visualization of electrostatic potential of biomolecules.

Jo, Sunhwan / Vargyas, Miklos / Vasko-Szedlar, Judit / Roux, Benoît / Im, Wonpil

Nucleic acids research

2008 Volume 36, Issue Web Server issue, Page(s) W270–5

Abstract: PBEQ-Solver provides a web-based graphical user interface to read biomolecular structures, solve the Poisson-Boltzmann (PB) equations and interactively visualize the electrostatic potential. PBEQ-Solver calculates (i) electrostatic potential and ... ...

Abstract	PBEQ-Solver provides a web-based graphical user interface to read biomolecular structures, solve the Poisson-Boltzmann (PB) equations and interactively visualize the electrostatic potential. PBEQ-Solver calculates (i) electrostatic potential and solvation free energy, (ii) protein-protein (DNA or RNA) electrostatic interaction energy and (iii) pKa of a selected titratable residue. All the calculations can be performed in both aqueous solvent and membrane environments (with a cylindrical pore in the case of membrane). PBEQ-Solver uses the PBEQ module in the biomolecular simulation program CHARMM to solve the finite-difference PB equation of molecules specified by users. Users can interactively inspect the calculated electrostatic potential on the solvent-accessible surface as well as iso-electrostatic potential contours using a novel online visualization tool based on MarvinSpace molecular visualization software, a Java applet integrated within CHARMM-GUI (http://www.charmm-gui.org). To reduce the computational time on the server, and to increase the efficiency in visualization, all the PB calculations are performed with coarse grid spacing (1.5 A before and 1 A after focusing). PBEQ-Solver suggests various physical parameters for PB calculations and users can modify them if necessary. PBEQ-Solver is available at http://www.charmm-gui.org/input/pbeqsolver.
MeSH term(s)	Cell Membrane/chemistry ; Computer Graphics ; DNA/chemistry ; Databases, Protein ; Internet ; Mathematical Computing ; Models, Molecular ; Proteins/chemistry ; RNA/chemistry ; Software ; Static Electricity
Chemical Substances	Proteins ; RNA (63231-63-0) ; DNA (9007-49-2)
Language	English
Publishing date	2008-05-28
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
ZDB-ID	186809-3
ISSN	1362-4962 ; 1362-4954 ; 0301-5610 ; 0305-1048
ISSN (online)	1362-4962 ; 1362-4954
ISSN	0301-5610 ; 0305-1048
DOI	10.1093/nar/gkn314
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Article: Making "real" molecules in virtual space.

Pirok, György / Maté, Nóra / Varga, Jeno / Szegezdi, József / Vargyas, Miklós / Dórant, Szilard / Csizmadia, Ferenc

Journal of chemical information and modeling

2006 Volume 46, Issue 2, Page(s) 563–568

Abstract: Predicting "realistic" compounds of given chemical reactions with virtual synthesis tools usually requires the manual intervention of experienced chemists in the enumeration phase for the selection of appropriate reactants, assignment of the ... ...

Abstract	Predicting "realistic" compounds of given chemical reactions with virtual synthesis tools usually requires the manual intervention of experienced chemists in the enumeration phase for the selection of appropriate reactants, assignment of the corresponding reaction sites, and removal of the unlikely products. To automate the virtual synthesis process, we have moved the expertise intensive parts from the compound library design phase to the reaction library design phase. ChemAxon is building an in silico reaction library containing important preparative transformations, where each reaction definition contains a generic transformation scheme and additional rules to handle the various starting compounds according to the corresponding chemo-, regio-, and stereoselectivity issues. Having well designed reaction definitions in hand, our software tool is able to generate synthetically feasible compound libraries with minimal effort in the enumeration phase.
MeSH term(s)	Combinatorial Chemistry Techniques ; Computer Simulation ; Models, Chemical ; Models, Molecular ; Molecular Structure ; Software
Language	English
Publishing date	2006-03
Publishing country	United States
Document type	Journal Article
ZDB-ID	190019-5
ISSN	1549-9596 ; 0095-2338
ISSN	1549-9596 ; 0095-2338
DOI	10.1021/ci050373p
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Article ; Online: Measurement of Direct-Photon Cross Section and Double-Helicity Asymmetry at sqrt[s]=510 GeV in p[over →]+p[over →] Collisions.

Abdulameer, N J / Acharya, U / Adare, A / Aidala, C / Ajitanand, N N / Akiba, Y / Akimoto, R / Alfred, M / Apadula, N / Aramaki, Y / Asano, H / Atomssa, E T / Awes, T C / Azmoun, B / Babintsev, V / Bai, M / Bandara, N S / Bannier, B / Barish, K N /

Bathe, S / Bazilevsky, A / Beaumier, M / Beckman, S / Belmont, R / Berdnikov, A / Berdnikov, Y / Bichon, L / Black, D / Blankenship, B / Bok, J S / Borisov, V / Boyle, K / Brooks, M L / Bryslawskyj, J / Buesching, H / Bumazhnov, V / Campbell, S / Canoa Roman, V / Chen, C-H / Chiu, M / Chi, C Y / Choi, I J / Choi, J B / Chujo, T / Citron, Z / Connors, M / Corliss, R / Corrales Morales, Y / Csanád, M / Csörgő, T / Datta, A / Daugherity, M S / David, G / Dean, C T / DeBlasio, K / Dehmelt, K / Denisov, A / Deshpande, A / Desmond, E J / Ding, L / Dion, A / Doomra, V / Do, J H / Drees, A / Drees, K A / Durham, J M / Durum, A / En'yo, H / Enokizono, A / Esha, R / Fadem, B / Fan, W / Feege, N / Fields, D E / Finger, M / Firak, D / Fitzgerald, D / Fokin, S L / Frantz, J E / Franz, A / Frawley, A D / Gallus, P / Gal, C / Garg, P / Ge, H / Giles, M / Giordano, F / Glenn, A / Goto, Y / Grau, N / Greene, S V / Grosse Perdekamp, M / Gunji, T / Guragain, H / Gu, Y / Hachiya, T / Haggerty, J S / Hahn, K I / Hamagaki, H / Hanks, J / Han, S Y / Harvey, M / Hasegawa, S / Hemmick, T K / He, X / Hill, J C / Hodges, A / Hollis, R S / Homma, K / Hong, B / Hoshino, T / Huang, J / Ikeda, Y / Imai, K / Imazu, Y / Inaba, M / Iordanova, A / Isenhower, D / Ivanishchev, D / Jacak, B V / Jeon, S J / Jezghani, M / Jiang, X / Ji, Z / Johnson, B M / Joo, E / Joo, K S / Jouan, D / Jumper, D S / Kang, J H / Kang, J S / Kawall, D / Kazantsev, A V / Key, J A / Khachatryan, V / Khanzadeev, A / Khatiwada, A / Kihara, K / Kim, C / Kim, D H / Kim, D J / Kim, E-J / Kim, H-J / Kim, M / Kim, T / Kim, Y K / Kincses, D / Kingan, A / Kistenev, E / Klatsky, J / Kleinjan, D / Kline, P / Koblesky, T / Kofarago, M / Koster, J / Kotov, D / Kovacs, L / Kurgyis, B / Kurita, K / Kurosawa, M / Kwon, Y / Lajoie, J G / Larionova, D / Lebedev, A / Lee, K B / Lee, S H / Leitch, M J / Leitgab, M / Lewis, N A / Lim, S H / Liu, M X / Li, X / Loomis, D A / Lynch, D / Lökös, S / Majoros, T / Makdisi, Y I / Makek, M / Manion, A / Manko, V I / Mannel, E / McCumber, M / McGaughey, P L / McGlinchey, D / McKinney, C / Meles, A / Mendoza, M / Meredith, B / Miake, Y / Mignerey, A C / Miller, A J / Milov, A / Mishra, D K / Mitchell, J T / Mitrankova, M / Mitrankov, Iu / Miyasaka, S / Mizuno, S / Mondal, M M / Montuenga, P / Moon, T / Morrison, D P / Moukhanova, T V / Muhammad, A / Mulilo, B / Murakami, T / Murata, J / Mwai, A / Nagamiya, S / Nagle, J L / Nagy, M I / Nakagawa, I / Nakagomi, H / Nakano, K / Nattrass, C / Nelson, S / Netrakanti, P K / Nihashi, M / Niida, T / Nouicer, R / Novitzky, N / Nukazuka, G / Nyanin, A S / O'Brien, E / Ogilvie, C A / Oh, J / Orjuela Koop, J D / Orosz, M / Osborn, J D / Oskarsson, A / Ozawa, K / Pak, R / Pantuev, V / Papavassiliou, V / Park, J S / Park, S / Patel, L / Patel, M / Pate, S F / Peng, J-C / Peng, W / Perepelitsa, D V / Perera, G D N / Peressounko, D Yu / PerezLara, C E / Perry, J / Petti, R / Pinkenburg, C / Pinson, R / Pisani, R P / Potekhin, M / Pun, A / Purschke, M L / Radzevich, P V / Rak, J / Ramasubramanian, N / Ravinovich, I / Read, K F / Reynolds, D / Riabov, V / Riabov, Y / Richford, D / Riveli, N / Roach, D / Rolnick, S D / Rosati, M / Rowan, Z / Rubin, J G / Runchey, J / Saito, N / Sakaguchi, T / Sako, H / Samsonov, V / Sarsour, M / Sato, S / Sawada, S / Schaefer, B / Schmoll, B K / Sedgwick, K / Seele, J / Seidl, R / Sen, A / Seto, R / Sett, P / Sexton, A / Sharma, D / Shein, I / Shibata, M / Shibata, T-A / Shigaki, K / Shimomura, M / Shi, Z / Shukla, P / Sickles, A / Silva, C L / Silvermyr, D / Singh, B K / Singh, C P / Singh, V / Slunečka, M / Smith, K L / Soltz, R A / Sondheim, W E / Sorensen, S P / Sourikova, I V / Stankus, P W / Stepanov, M / Stoll, S P / Sugitate, T / Sukhanov, A / Sumita, T / Sun, J / Sun, Z / Sziklai, J / Takahama, R / Takahara, A / Taketani, A / Tanida, K / Tannenbaum, M J / Tarafdar, S / Taranenko, A / Timilsina, A / Todoroki, T / Tomášek, M / Torii, H / Towell, M / Towell, R / Towell, R S / Tserruya, I / Ueda, Y / Ujvari, B / van Hecke, H W / Vargyas, M / Velkovska, J / Virius, M / Vrba, V / Vznuzdaev, E / Wang, X R / Wang, Z / Watanabe, D / Watanabe, Y / Watanabe, Y S / Wei, F / Whitaker, S / Wolin, S / Wong, C P / Woody, C L / Wysocki, M / Xia, B / Xue, L / Yalcin, S / Yamaguchi, Y L / Yanovich, A / Yoon, I / Younus, I / Yushmanov, I E / Zajc, W A / Zelenski, A / Zou, L

Physical review letters

2023 Volume 130, Issue 25, Page(s) 251901

Abstract: We present measurements of the cross section and double-helicity asymmetry A_{LL} of direct-photon production in p[over →]+p[over →] collisions at sqrt[s]=510 GeV. The measurements have been performed at midrapidity (|η|<0.25) with the PHENIX detector ... ...

Abstract	We present measurements of the cross section and double-helicity asymmetry A_{LL} of direct-photon production in p[over →]+p[over →] collisions at sqrt[s]=510 GeV. The measurements have been performed at midrapidity (\|η\|<0.25) with the PHENIX detector at the Relativistic Heavy Ion Collider. At relativistic energies, direct photons are dominantly produced from the initial quark-gluon hard scattering and do not interact via the strong force at leading order. Therefore, at sqrt[s]=510 GeV, where leading-order-effects dominate, these measurements provide clean and direct access to the gluon helicity in the polarized proton in the gluon-momentum-fraction range 0.02<x<0.08, with direct sensitivity to the sign of the gluon contribution.<br />
MeSH term(s)	Photons ; Food ; Motion
Language	English
Publishing date	2023-07-07
Publishing country	United States
Document type	Journal Article
ZDB-ID	208853-8
ISSN	1079-7114 ; 0031-9007
ISSN (online)	1079-7114
ISSN	0031-9007
DOI	10.1103/PhysRevLett.130.251901
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Article ; Online: Erratum: Evolution of π^{0} Suppression in Au+Au Collisions from sqrt[s_{NN}]=39 to 200 GeV [Phys. Rev. Lett. 109, 152301 (2012)].

Adare, A / Afanasiev, S / Aidala, C / Ajitanand, N N / Akiba, Y / Akimoto, R / Al-Ta'ani, H / Alexander, J / Angerami, A / Aoki, K / Apadula, N / Aramaki, Y / Asano, H / Aschenauer, E C / Atomssa, E T / Awes, T C / Azmoun, B / Babintsev, V / Bai, M /

Bannier, B / Barish, K N / Bassalleck, B / Bathe, S / Baublis, V / Baumgart, S / Bazilevsky, A / Belmont, R / Berdnikov, A / Berdnikov, Y / Bing, X / Blau, D S / Boyle, K / Brooks, M L / Buesching, H / Bumazhnov, V / Butsyk, S / Campbell, S / Castera, P / Chen, C-H / Chi, C Y / Chiu, M / Choi, I J / Choi, J B / Choi, S / Choudhury, R K / Christiansen, P / Chujo, T / Chvala, O / Cianciolo, V / Citron, Z / Cole, B A / Connors, M / Csanád, M / Csörgő, T / Dairaku, S / Datta, A / Daugherity, M S / David, G / Denisov, A / Deshpande, A / Desmond, E J / Dharmawardane, K V / Dietzsch, O / Ding, L / Dion, A / Donadelli, M / Drapier, O / Drees, A / Drees, K A / Durham, J M / Durum, A / D'Orazio, L / Edwards, S / Efremenko, Y V / Engelmore, T / Enokizono, A / Esumi, S / Eyser, K O / Fadem, B / Fields, D E / Finger, M / Fleuret, F / Fokin, S L / Frantz, J E / Franz, A / Frawley, A D / Fukao, Y / Fusayasu, T / Gainey, K / Gal, C / Garishvili, A / Garishvili, I / Glenn, A / Gong, X / Gonin, M / Goto, Y / Granier de Cassagnac, R / Grau, N / Greene, S V / Grosse Perdekamp, M / Gunji, T / Guo, L / Gustafsson, H-Å / Hachiya, T / Haggerty, J S / Hahn, K I / Hamagaki, H / Hanks, J / Hashimoto, K / Haslum, E / Hayano, R / He, X / Hemmick, T K / Hester, T / Hill, J C / Hollis, R S / Homma, K / Hong, B / Horaguchi, T / Hori, Y / Huang, S / Ichihara, T / Iinuma, H / Ikeda, Y / Imrek, J / Inaba, M / Iordanova, A / Isenhower, D / Issah, M / Isupov, A / Ivanischev, D / Jacak, B V / Javani, M / Jia, J / Jiang, X / Johnson, B M / Joo, K S / Jouan, D / Kamin, J / Kaneti, S / Kang, B H / Kang, J H / Kang, J S / Kapustinsky, J / Karatsu, K / Kasai, M / Kawall, D / Kazantsev, A V / Kempel, T / Khanzadeev, A / Kijima, K M / Kim, B I / Kim, C / Kim, D J / Kim, E-J / Kim, H J / Kim, K-B / Kim, Y-J / Kim, Y K / Kinney, E / Kiss, Á / Kistenev, E / Klatsky, J / Kleinjan, D / Kline, P / Komatsu, Y / Komkov, B / Koster, J / Kotchetkov, D / Kotov, D / Král, A / Krizek, F / Kunde, G J / Kurita, K / Kurosawa, M / Kwon, Y / Kyle, G S / Lacey, R / Lai, Y S / Lajoie, J G / Lebedev, A / Lee, B / Lee, D M / Lee, J / Lee, K B / Lee, K S / Lee, S H / Lee, S R / Leitch, M J / Leite, M A L / Leitgab, M / Lewis, B / Lim, S H / Linden Levy, L A / Litvinenko, A / Liu, M X / Love, B / Maguire, C F / Makdisi, Y I / Makek, M / Malakhov, A / Manion, A / Manko, V I / Mannel, E / Masumoto, S / McCumber, M / McGaughey, P L / McGlinchey, D / McKinney, C / Mendoza, M / Meredith, B / Miake, Y / Mibe, T / Mignerey, A C / Milov, A / Mishra, D K / Mitchell, J T / Miyachi, Y / Miyasaka, S / Mohanty, A K / Moon, H J / Morrison, D P / Motschwiller, S / Moukhanova, T V / Murakami, T / Murata, J / Nagae, T / Nagamiya, S / Nagle, J L / Nagy, M I / Nakagawa, I / Nakamiya, Y / Nakamura, K R / Nakamura, T / Nakano, K / Nattrass, C / Nederlof, A / Nihashi, M / Nouicer, R / Novitzky, N / Nyanin, A S / O'Brien, E / Ogilvie, C A / Okada, K / Oskarsson, A / Ouchida, M / Ozawa, K / Pak, R / Pantuev, V / Papavassiliou, V / Park, B H / Park, I H / Park, S K / Pate, S F / Patel, L / Pei, H / Peng, J-C / Pereira, H / Peresedov, V / Peressounko, D Yu / Petti, R / Pinkenburg, C / Pisani, R P / Proissl, M / Purschke, M L / Qu, H / Rak, J / Ravinovich, I / Read, K F / Reynolds, R / Riabov, V / Riabov, Y / Richardson, E / Roach, D / Roche, G / Rolnick, S D / Rosati, M / Rukoyatkin, P / Sahlmueller, B / Saito, N / Sakaguchi, T / Samsonov, V / Sano, M / Sarsour, M / Sawada, S / Sedgwick, K / Seidl, R / Sen, A / Seto, R / Sharma, D / Shein, I / Shibata, T-A / Shigaki, K / Shimomura, M / Shoji, K / Shukla, P / Sickles, A / Silva, C L / Silvermyr, D / Sim, K S / Singh, B K / Singh, C P / Singh, V / Slunečka, M / Soltz, R A / Sondheim, W E / Sorensen, S P / Soumya, M / Sourikova, I V / Stankus, P W / Stenlund, E / Stepanov, M / Ster, A / Stoll, S P / Sugitate, T / Sukhanov, A / Sun, J / Sziklai, J / Takagui, E M / Takahara, A / Taketani, A / Tanaka, Y / Taneja, S / Tanida, K / Tannenbaum, M J / Tarafdar, S / Taranenko, A / Tennant, E / Themann, H / Todoroki, T / Tomášek, L / Tomášek, M / Torii, H / Towell, R S / Tserruya, I / Tsuchimoto, Y / Tsuji, T / Vale, C / van Hecke, H W / Vargyas, M / Vazquez-Zambrano, E / Veicht, A / Velkovska, J / Vértesi, R / Virius, M / Vossen, A / Vrba, V / Vznuzdaev, E / Wang, X R / Watanabe, D / Watanabe, K / Watanabe, Y / Watanabe, Y S / Wei, F / Wei, R / White, S N / Winter, D / Wolin, S / Woody, C L / Wysocki, M / Yamaguchi, Y L / Yang, R / Yanovich, A / Ying, J / Yokkaichi, S / You, Z / Younus, I / Yushmanov, I E / Zajc, W A / Zelenski, A / Zolin, L

Physical review letters

2020 Volume 125, Issue 4, Page(s) 49901

Abstract: This corrects the article DOI: 10.1103/PhysRevLett.109.152301. ...

Abstract	This corrects the article DOI: 10.1103/PhysRevLett.109.152301.
Language	English
Publishing date	2020-08-14
Publishing country	United States
Document type	Published Erratum
ZDB-ID	208853-8
ISSN	1079-7114 ; 0031-9007
ISSN (online)	1079-7114
ISSN	0031-9007
DOI	10.1103/PhysRevLett.125.049901
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Book ; Online: Production of $\pi^0$ and $\eta$ mesons in U$+$U collisions at $\sqrt{s_{_{NN}}}=192$ GeV

Acharya, U. / Aidala, C. / Ajitanand, N. N. / Akiba, Y. / Akimoto, R. / Alexander, J. / Aoki, K. / Apadula, N. / Asano, H. / Atomssa, E. T. / Awes, T. C. / Azmoun, B. / Babintsev, V. / Bai, M. / Bai, X. / Bannier, B. / Barish, K. N. / Bathe, S. / Baublis, V. /

Baumann, C. / Baumgart, S. / Bazilevsky, A. / Beaumier, M. / Belmont, R. / Berdnikov, A. / Berdnikov, Y. / Bichon, L. / Black, D. / Blankenship, B. / Blau, D. S. / Bok, J. S. / Borisov, V. / Boyle, K. / Brooks, M. L. / Bryslawskyj, J. / Buesching, H. / Bumazhnov, V. / Butsyk, S. / Campbell, S. / Roman, V. Canoa / Chen, C. -H. / Chi, C. Y. / Chiu, M. / Choi, I. J. / Choi, J. B. / Choi, S. / Christiansen, P. / Chujo, T. / Cianciolo, V. / Cole, B. A. / Connors, M. / Cronin, N. / Crossette, N. / Csanád, M. / Csörgő, T. / Datta, A. / Daugherity, M. S. / David, G. / DeBlasio, K. / Dehmelt, K. / Denisov, A. / Deshpande, A. / Desmond, E. J. / Ding, L. / Do, J. H. / D'Orazio, L. / Drapier, O. / Drees, A. / Drees, K. A. / Durham, J. M. / Durum, A. / Engelmore, T. / Enokizono, A. / Esha, R. / Esumi, S. / Eyser, K. O. / Fadem, B. / Fan, W. / Fields, D. E. / Finger, M. / Finger, Jr., M. / Firak, D. / Fitzgerald, D. / Fleuret, F. / Fokin, S. L. / Frantz, J. E. / Franz, A. / Frawley, A. 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2020

Abstract: The PHENIX experiment at the Relativistic Heavy Ion Collider measured $\pi^0$ and $\eta$ mesons at midrapidity in U$+$U collisions at $\sqrt{s_{_{NN}}}=192$ GeV in a wide transverse momentum range. Measurements were performed in the $\pi^0(\eta)\ ... ...

Abstract	The PHENIX experiment at the Relativistic Heavy Ion Collider measured $\pi^0$ and $\eta$ mesons at midrapidity in U$+$U collisions at $\sqrt{s_{_{NN}}}=192$ GeV in a wide transverse momentum range. Measurements were performed in the $\pi^0(\eta)\rightarrow\gamma\gamma$ decay modes. A strong suppression of $\pi^0$ and $\eta$ meson production at high transverse momentum was observed in central U$+$U collisions relative to binary scaled $p$$+$$p$ results. Yields of $\pi^0$ and $\eta$ mesons measured in U$+$U collisions show similar suppression pattern to the ones measured in Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV for similar numbers of participant nucleons. The $\eta$/$\pi^0$ ratios do not show dependence on centrality or transverse momentum, and are consistent with previously measured values in hadron-hadron, hadron-nucleus, nucleus-nucleus, and $e^+e^-$ collisions. Comment: 403 authors from 72 institutions, 13 pages, 6 figures, 7 tables, 2012 data. v2 is version accepted by Physical Review C. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be) publicly available at http://www.phenix.bnl.gov/papers.html
Keywords	High Energy Physics - Experiment ; Nuclear Experiment
Subject code	551
Publishing date	2020-05-29
Publishing country	us
Document type	Book ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Scattering Studies with Low-Energy Kaon-Proton Femtoscopy in Proton-Proton Collisions at the LHC.

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Rogalev, R / Rogochaya, E / Rohr, D / Röhrich, D / Rokita, P S / Ronchetti, F / Rosas, E D / Roslon, K / Rosnet, P / Rossi, A / Rotondi, A / Roukoutakis, F / Roy, A / Roy, P / Rueda, O V / Rui, R / Rumyantsev, B / Rustamov, A / Ryabinkin, E / Ryabov, Y / Rybicki, A / Rytkonen, H / Saarinen, S / Sadhu, S / Sadovsky, S / Šafařík, K / Saha, S K / Sahoo, B / Sahoo, P / Sahoo, R / Sahoo, S / Sahu, P K / Saini, J / Sakai, S / Sambyal, S / Samsonov, V / Sandoval, A / Sarkar, A / Sarkar, D / Sarkar, N / Sarma, P / Sarti, V M / Sas, M H P / Scapparone, E / Schaefer, B / Schambach, J / Scheid, H S / Schiaua, C / Schicker, R / Schmah, A / Schmidt, C / Schmidt, H R / Schmidt, M O / Schmidt, M / Schmidt, N V / Schmier, A R / Schukraft, J / Schutz, Y / Schwarz, K / Schweda, K / Scioli, G / Scomparin, E / Šefčík, M / Seger, J E / Sekiguchi, Y / Sekihata, D / Selyuzhenkov, I / Senyukov, S / Serradilla, E / Sett, P / Sevcenco, A / Shabanov, A / Shabetai, A / Shahoyan, R / Shaikh, W / Shangaraev, A / Sharma, A / Sharma, M / Sharma, N / Sheikh, A I / Shigaki, K / Shimomura, M / Shirinkin, S / Shou, Q / Sibiriak, Y / Siddhanta, S / Siemiarczuk, T / Silvermyr, D / Simatovic, G / Simonetti, G / Singh, R / Singh, V K / Singhal, V / Sinha, T / Sitar, B / Sitta, M / Skaali, T B / Slupecki, M / Smirnov, N / Snellings, R J M / Snellman, T W / Sochan, J / Soncco, C / Song, J / Songmoolnak, A / Soramel, F / Sorensen, S / Sputowska, I / Stachel, J / Stan, I / Stankus, P / Steffanic, P J / Stenlund, E / Stocco, D / Storetvedt, M M / Strmen, P / Suaide, A A P / Sugitate, T / Suire, C / Suleymanov, M / Suljic, M / Sultanov, R / Šumbera, M / Sumowidagdo, S / Suzuki, K / Swain, S / Szabo, A / Szarka, I / Tabassam, U / Taillepied, G / Takahashi, J / Tambave, G J / Tang, S / Tarhini, M / Tarzila, M G / Tauro, A / Tejeda Muñoz, G / Telesca, A / Terrevoli, C / Thakur, D / Thakur, S / Thomas, D / Thoresen, F / Tieulent, R / Tikhonov, A / Timmins, A R / Toia, A / Topilskaya, N / Toppi, M / Torales-Acosta, F / Torres, S R / Tripathy, S / Tripathy, T / Trogolo, S / Trombetta, G / Tropp, L / Trubnikov, V / Trzaska, W H / Trzcinski, T P / Trzeciak, B A / Tsuji, T / Tumkin, A / Turrisi, R / Tveter, T S / Ullaland, K / Umaka, E N / Uras, A / Usai, G L / Utrobicic, A / Vala, M / Valle, N / Vallero, S / van der Kolk, N / van Doremalen, L V R / van Leeuwen, M / Vande Vyvre, P / Varga, D / Varga-Kofarago, M / Vargas, A / Vargyas, M / Varma, R / Vasileiou, M / Vasiliev, A / Vázquez Doce, O / Vechernin, V / Veen, A M / Vercellin, E / Vergara Limón, S / Vermunt, L / Vernet, R / Vértesi, R / Vickovic, L / Viinikainen, J / Vilakazi, Z / Villalobos Baillie, O / Villatoro Tello, A / Vino, G / Vinogradov, A / Virgili, T / Vislavicius, V / Vodopyanov, A / Volkel, B / Völkl, M A / Voloshin, K / Voloshin, S A / Volpe, G / von Haller, B / Vorobyev, I / Voscek, D / Vrláková, J / Wagner, B / Watanabe, Y / Weber, M / Weber, S G / Wegrzynek, A / Weiser, D F / Wenzel, S C / Wessels, J P / Westerhoff, U / Whitehead, A M / Widmann, E / Wiechula, J / Wikne, J / Wilk, G / Wilkinson, J / Willems, G A / Willsher, E / Windelband, B / Witt, W E / Wu, Y / Xu, R / Yalcin, S / Yamakawa, K / Yang, S / Yano, S / Yin, Z / Yokoyama, H / Yoo, I-K / Yoon, J H / Yuan, S / Yuncu, A / Yurchenko, V / Zaccolo, V / Zaman, A / Zampolli, C / Zanoli, H J C / Zardoshti, N / Zarochentsev, A / Závada, P / Zaviyalov, N / Zbroszczyk, H / Zhalov, M / Zhang, X / Zhang, Z / Zhao, C / Zherebchevskii, V / Zhigareva, N / Zhou, D / Zhou, Y / Zhou, Z / Zhu, J / Zhu, Y / Zichichi, A / Zimmermann, M B / Zinovjev, G / Zurlo, N

Physical review letters

2020 Volume 124, Issue 9, Page(s) 92301

Abstract: The study of the strength and behavior of the antikaon-nucleon (K[over ¯]N) interaction constitutes one of the key focuses of the strangeness sector in low-energy quantum chromodynamics (QCD). In this Letter a unique high-precision measurement of the ... ...

Abstract	The study of the strength and behavior of the antikaon-nucleon (K[over ¯]N) interaction constitutes one of the key focuses of the strangeness sector in low-energy quantum chromodynamics (QCD). In this Letter a unique high-precision measurement of the strong interaction between kaons and protons, close and above the kinematic threshold, is presented. The femtoscopic measurements of the correlation function at low pair-frame relative momentum of (K^{+}p⊕K^{-}p[over ¯]) and (K^{-}p⊕K^{+}p[over ¯]) pairs measured in pp collisions at sqrt[s]=5, 7, and 13 TeV are reported. A structure observed around a relative momentum of 58 MeV/c in the measured correlation function of (K^{-}p⊕K^{+}p[over ¯]) with a significance of 4.4σ constitutes the first experimental evidence for the opening of the (K[over ¯]^{0}n⊕K^{0}n[over ¯]) isospin breaking channel due to the mass difference between charged and neutral kaons. The measured correlation functions have been compared to Jülich and Kyoto models in addition to the Coulomb potential. The high-precision data at low relative momenta presented in this work prove femtoscopy to be a powerful complementary tool to scattering experiments and provide new constraints above the K[over ¯]N threshold for low-energy QCD chiral models.
Language	English
Publishing date	2020-03-23
Publishing country	United States
Document type	Journal Article
ZDB-ID	208853-8
ISSN	1079-7114 ; 0031-9007
ISSN (online)	1079-7114
ISSN	0031-9007
DOI	10.1103/PhysRevLett.124.092301
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Article ; Online: Evolution of π(0) suppression in Au+Au collisions from √(s(NN))=39 to 200 GeV.

Bannier, B / Barish, K N / Bassalleck, B / Bathe, S / Baublis, V / Baumgart, S / Bazilevsky, A / Belmont, R / Berdnikov, A / Berdnikov, Y / Bing, X / Blau, D S / Boyle, K / Brooks, M L / Buesching, H / Bumazhnov, V / Butsyk, S / Campbell, S / Castera, P / Chen, C-H / Chi, C Y / Chiu, M / Choi, I J / Choi, J B / Choi, S / Choudhury, R K / Christiansen, P / Chujo, T / Chvala, O / Cianciolo, V / Citron, Z / Cole, B A / Connors, M / Csanád, M / Csörgő, T / Dairaku, S / Datta, A / Daugherity, M S / David, G / Denisov, A / Deshpande, A / Desmond, E J / Dharmawardane, K V / Dietzsch, O / Ding, L / Dion, A / Donadelli, M / Drapier, O / Drees, A / Drees, K A / Durham, J M / Durum, A / D'Orazio, L / Edwards, S / Efremenko, Y V / Engelmore, T / Enokizono, A / Esumi, S / Eyser, K O / Fadem, B / Fields, D E / Finger, M / Fleuret, F / Fokin, S L / Frantz, J E / Franz, A / Frawley, A D / Fukao, Y / Fusayasu, T / Gainey, K / Gal, C / Garishvili, A / Garishvili, I / Glenn, A / Gong, X / Gonin, M / Goto, Y / Granier de Cassagnac, R / Grau, N / Greene, S V / Grosse Perdekamp, M / Gunji, T / Guo, L / Gustafsson, H-Å / Hachiya, T / Haggerty, J S / Hahn, K I / Hamagaki, H / Hanks, J / Hashimoto, K / Haslum, E / Hayano, R / He, X / Hemmick, T K / Hester, T / Hill, J C / Hollis, R S / Homma, K / Hong, B / Horaguchi, T / Hori, Y / Huang, S / Ichihara, T / Iinuma, H / Ikeda, Y / Imrek, J / Inaba, M / Iordanova, A / Isenhower, D / Issah, M / Isupov, A / Ivanischev, D / Jacak, B V / Javani, M / Jia, J / Jiang, X / Johnson, B M / Joo, K S / Jouan, D / Kamin, J / Kaneti, S / Kang, B H / Kang, J H / Kang, J S / Kapustinsky, J / Karatsu, K / Kasai, M / Kawall, D / Kazantsev, A V / Kempel, T / Khanzadeev, A / Kijima, K M / Kim, B I / Kim, C / Kim, D J / Kim, E-J / Kim, H J / Kim, K-B / Kim, Y-J / Kim, Y K / Kinney, E / Kiss, A / Kistenev, E / Klatsky, J / Kleinjan, D / Kline, P / Komatsu, Y / Komkov, B / Koster, J / Kotchetkov, D / Kotov, D / Král, A / Krizek, F / Kunde, G J / Kurita, K / Kurosawa, M / Kwon, Y / Kyle, G S / Lacey, R / Lai, Y S / Lajoie, J G / Lebedev, A / Lee, B / Lee, D M / Lee, J / Lee, K B / Lee, K S / Lee, S H / Lee, S R / Leitch, M J / Leite, M A L / Leitgab, M / Lewis, B / Lim, S H / Linden Levy, L A / Litvinenko, A / Liu, M X / Love, B / Maguire, C F / Makdisi, Y I / Makek, M / Malakhov, A / Manion, A / Manko, V I / Mannel, E / Masumoto, S / McCumber, M / McGaughey, P L / McGlinchey, D / McKinney, C / Mendoza, M / Meredith, B / Miake, Y / Mibe, T / Mignerey, A C / Milov, A / Mishra, D K / Mitchell, J T / Miyachi, Y / Miyasaka, S / Mohanty, A K / Moon, H J / Morrison, D P / Motschwiller, S / Moukhanova, T V / Murakami, T / Murata, J / Nagae, T / Nagamiya, S / Nagle, J L / Nagy, M I / Nakagawa, I / Nakamiya, Y / Nakamura, K R / Nakamura, T / Nakano, K / Nattrass, C / Nederlof, A / Nihashi, M / Nouicer, R / Novitzky, N / Nyanin, A S / O'Brien, E / Ogilvie, C A / Okada, K / Oskarsson, A / Ouchida, M / Ozawa, K / Pak, R / Pantuev, V / Papavassiliou, V / Park, B H / Park, I H / Park, S K / Pate, S F / Patel, L / Pei, H / Peng, J-C / Pereira, H / Peresedov, V / Peressounko, D Yu / Petti, R / Pinkenburg, C / Pisani, R P / Proissl, M / Purschke, M L / Qu, H / Rak, J / Ravinovich, I / Read, K F / Reynolds, R / Riabov, V / Riabov, Y / Richardson, E / Roach, D / Roche, G / Rolnick, S D / Rosati, M / Rukoyatkin, P / Sahlmueller, B / Saito, N / Sakaguchi, T / Samsonov, V / Sano, M / Sarsour, M / Sawada, S / Sedgwick, K / Seidl, R / Sen, A / Seto, R / Sharma, D / Shein, I / Shibata, T-A / Shigaki, K / Shimomura, M / Shoji, K / Shukla, P / Sickles, A / Silva, C L / Silvermyr, D / Sim, K S / Singh, B K / Singh, C P / Singh, V / Slunečka, M / Soltz, R A / Sondheim, W E / Sorensen, S P / Soumya, M / Sourikova, I V / Stankus, P W / Stenlund, E / Stepanov, M / Ster, A / Stoll, S P / Sugitate, T / Sukhanov, A / Sun, J / Sziklai, J / Takagui, E M / Takahara, A / Taketani, A / Tanaka, Y / Taneja, S / Tanida, K / Tannenbaum, M J / Tarafdar, S / Taranenko, A / Tennant, E / Themann, H / Todoroki, T / Tomášek, L / Tomášek, M / Torii, H / Towell, R S / Tserruya, I / Tsuchimoto, Y / Tsuji, T / Vale, C / van Hecke, H W / Vargyas, M / Vazquez-Zambrano, E / Veicht, A / Velkovska, J / Vértesi, R / Virius, M / Vossen, A / Vrba, V / Vznuzdaev, E / Wang, X R / Watanabe, D / Watanabe, K / Watanabe, Y / Watanabe, Y S / Wei, F / Wei, R / White, S N / Winter, D / Wolin, S / Woody, C L / Wysocki, M / Yamaguchi, Y L / Yang, R / Yanovich, A / Ying, J / Yokkaichi, S / You, Z / Younus, I / Yushmanov, I E / Zajc, W A / Zelenski, A / Zolin, L

Physical review letters

2012 Volume 109, Issue 15, Page(s) 152301

Abstract: Neutral-pion π(0) spectra were measured at midrapidity (|y|<0.35) in Au+Au collisions at √(s(NN))=39 and 62.4 GeV and compared with earlier measurements at 200 GeV in a transverse-momentum range of 1

Abstract	Neutral-pion π(0) spectra were measured at midrapidity (\|y\|<0.35) in Au+Au collisions at √(s(NN))=39 and 62.4 GeV and compared with earlier measurements at 200 GeV in a transverse-momentum range of 1<p(T)<10 GeV/c. The high-p(T) tail is well described by a power law in all cases, and the powers decrease significantly with decreasing center-of-mass energy. The change of powers is very similar to that observed in the corresponding spectra for p+p collisions. The nuclear modification factors (R(AA)) show significant suppression, with a distinct energy, centrality, and p(T) dependence. Above p(T)=7 GeV/c, R(AA) is similar for √(s(NN))=62.4 and 200 GeV at all centralities. Perturbative-quantum-chromodynamics calculations that describe R(AA) well at 200 GeV fail to describe the 39 GeV data, raising the possibility that, for the same p(T) region, the relative importance of initial-state effects and soft processes increases at lower energies. The p(T) range where π(0) spectra in central Au+Au collisions have the same power as in p+p collisions is ≈5 and 7 GeV/c for √(s(NN))=200 and 62.4 GeV, respectively. For the √(s(NN))=39 GeV data, it is not clear whether such a region is reached, and the x(T) dependence of the x(T)-scaling power-law exponent is very different from that observed in the √(s(NN))=62 and 200 GeV data, providing further evidence that initial-state effects and soft processes mask the in-medium suppression of hard-scattered partons to higher p(T) as the collision energy decreases.<br />
Language	English
Publishing date	2012-10-09
Publishing country	United States
Document type	Journal Article
ZDB-ID	208853-8
ISSN	1079-7114 ; 0031-9007
ISSN (online)	1079-7114
ISSN	0031-9007
DOI	10.1103/PhysRevLett.109.152301
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Article ; Online: First Observation of an Attractive Interaction between a Proton and a Cascade Baryon.

Physical review letters

2019 Volume 123, Issue 11, Page(s) 112002

Abstract: This Letter presents the first experimental observation of the attractive strong interaction between a proton and a multistrange baryon (hyperon) Ξ^{-}. The result is extracted from two-particle correlations of combined p-Ξ^{-}⊕p[over ¯]-Ξ[over ¯]^{+} ... ...

Abstract	This Letter presents the first experimental observation of the attractive strong interaction between a proton and a multistrange baryon (hyperon) Ξ^{-}. The result is extracted from two-particle correlations of combined p-Ξ^{-}⊕p[over ¯]-Ξ[over ¯]^{+} pairs measured in p-Pb collisions at sqrt[s_{NN}]=5.02 TeV at the LHC with ALICE. The measured correlation function is compared with the prediction obtained assuming only an attractive Coulomb interaction and a standard deviation in the range [3.6, 5.3] is found. Since the measured p-Ξ^{-}⊕p[over ¯]-Ξ[over ¯]^{+} correlation is significantly enhanced with respect to the Coulomb prediction, the presence of an additional, strong, attractive interaction is evident. The data are compatible with recent lattice calculations by the HAL-QCD Collaboration, with a standard deviation in the range [1.8, 3.7]. The lattice potential predicts a shallow repulsive Ξ^{-} interaction within pure neutron matter and this implies stiffer equations of state for neutron-rich matter including hyperons. Implications of the strong interaction for the modeling of neutron stars are discussed.
Language	English
Publishing date	2019-09-12
Publishing country	United States
Document type	Journal Article
ZDB-ID	208853-8
ISSN	1079-7114 ; 0031-9007
ISSN (online)	1079-7114
ISSN	0031-9007
DOI	10.1103/PhysRevLett.123.112002
Database	MEDical Literature Analysis and Retrieval System OnLINE

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