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  1. Article ; Online: Macroscopy of specimens from the genitourinary system.

    Varma, Murali / Dormer, John

    Journal of clinical pathology

    2024  Volume 77, Issue 3, Page(s) 177–183

    Abstract: Macroscopic specimen examination is often critical for accurate histopathology reporting but has generally received insufficient attention and may be delegated to inexperienced staff with limited guidance and supervision. This review discusses issues ... ...

    Abstract Macroscopic specimen examination is often critical for accurate histopathology reporting but has generally received insufficient attention and may be delegated to inexperienced staff with limited guidance and supervision. This review discusses issues around macroscopic examination of some common urological specimens; highlighting findings that are critical for patient management and others that are clinically irrelevant. Macroscopic findings are of limited value in completely submitted radical prostatectomy specimens but may be critical in orchidectomy specimens where identification of focal non-seminomatous components can significantly impact patient management. The maximum tumour dimension is often an important prognostic indicator, but specimen dimensions are generally of little clinical utility. Specimens should be carefully examined and judiciously sampled to identify clinically important focal abnormalities such as sarcomatoid change in a renal cell carcinoma and a minor non-seminomatous component in a predominant testicular seminoma. Meticulous macroscopic examination is key as less than 0.2% of the specimen (or macroscopically abnormal area) would be histologically examined even if the entire specimen/abnormal area is submitted for microscopic examination. Retroperitoneal pelvic lymph node dissection specimens for testicular cancer must be handled very differently from other lymph nodal block dissections. Current sampling protocols for transurethral resection of prostate specimens that are based on pre-MRI era data need to be reconsidered because they were specifically designed to detect occult prostate cancer, which would amount to histological cancer screening. Prostatic sampling of cystoprostatectomy specimens should be directed at accurately staging the known bladder cancer rather than detection of incidental prostate cancer.
    MeSH term(s) Male ; Humans ; Testicular Neoplasms/pathology ; Transurethral Resection of Prostate ; Prostatic Neoplasms/pathology ; Prostate/pathology ; Prostatectomy/methods ; Kidney Neoplasms/surgery
    Language English
    Publishing date 2024-02-19
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 80261-x
    ISSN 1472-4146 ; 0021-9746
    ISSN (online) 1472-4146
    ISSN 0021-9746
    DOI 10.1136/jcp-2023-208831
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Intraductal Carcinoma of the Prostate: A Guide for the Practicing Pathologist.

    Varma, Murali

    Advances in anatomic pathology

    2021  Volume 28, Issue 4, Page(s) 276–287

    Abstract: Intraductal carcinoma of the prostate gland (IDCP) is characterized by an expansile, architecturally, and cytologically atypical proliferation of prostatic epithelial cells within preexisting prostatic ducts and acini. There has been a wider recognition ... ...

    Abstract Intraductal carcinoma of the prostate gland (IDCP) is characterized by an expansile, architecturally, and cytologically atypical proliferation of prostatic epithelial cells within preexisting prostatic ducts and acini. There has been a wider recognition of IDCP by practicing pathologists since its recognition as a separate category in the World Health Organization (WHO) 2016 classification of tumours of the prostate gland. However, there is also a lack of clarity regarding the diagnosis and reporting of IDCP, which has been compounded by divergent expert recommendations regarding the grading of invasive prostate cancers associated with an intraductal component. The International Society of Urological Pathologists (ISUP) recommends that the IDCP component should be incorporated into the Gleason score, while the Genitourinary Pathology Society (GUPS) recommends excluding it when grading prostate cancer. This review seeks to clarify some of these issues and outline a pragmatic approach to reporting IDCP, particularly in needle biopsies. Diagnostic issues and terminology for lesions falling short of IDCP but exceeding that of high-grade prostatic intraepithelial neoplasia are discussed. The management of patients whose prostate biopsies show only IDCP without an associated invasive component is controversial. Some experts recommend radical therapy, while others recommend prompt repeat biopsy. An alternative clinicopathologic approach that takes into consideration the extent, histomorphology, and location (with respect to a radiologic abnormality) of IDCP, as well as radiologic features, is outlined.
    MeSH term(s) Carcinoma, Intraductal, Noninfiltrating/pathology ; Humans ; Male ; Neoplasm Grading ; Prostate/pathology ; Prostatic Neoplasms/pathology
    Language English
    Publishing date 2021-05-13
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 1212493-x
    ISSN 1533-4031 ; 1072-4109
    ISSN (online) 1533-4031
    ISSN 1072-4109
    DOI 10.1097/PAP.0000000000000303
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Demystifying PCR tests, challenges, alternatives, and future: A quick review focusing on COVID and fungal infections.

    Sajeer Paramabth, Muhammad / Varma, Manoj

    Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology

    2023  Volume 51, Issue 6, Page(s) 719–728

    Abstract: The polymerase chain reaction (PCR) technique is one of the most potent tools in molecular biology. It is extensively used for various applications ranging from medical diagnostics to forensic science and food quality testing. This technique has ... ...

    Abstract The polymerase chain reaction (PCR) technique is one of the most potent tools in molecular biology. It is extensively used for various applications ranging from medical diagnostics to forensic science and food quality testing. This technique has facilitated to survive COVID-19 pandemic by identifying the virus-infected individuals effortlessly and effectively. This review explores the principles, recent advancements, challenges, and alternatives of PCR technique in the context of COVID-19 and fungal infections. The introduction of PCR technique for anyone new to this field is the primary aim of this review and thereby equips them to understand the science of COVID-19 and related fungal infections in a simplistic manner.
    MeSH term(s) Humans ; COVID-19/epidemiology ; Pandemics ; Polymerase Chain Reaction/methods ; SARS-CoV-2/genetics ; Mycoses ; COVID-19 Testing
    Language English
    Publishing date 2023-07-24
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 2039717-3
    ISSN 1539-3429 ; 1470-8175
    ISSN (online) 1539-3429
    ISSN 1470-8175
    DOI 10.1002/bmb.21771
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Dealing with the honey trap: a case of hepatic melioidosis.

    Harsha, M / Praveen Kumar, T / Varma, M / Mukhopadhyay, C

    QJM : monthly journal of the Association of Physicians

    2023  Volume 116, Issue 11, Page(s) 940–941

    MeSH term(s) Humans ; Melioidosis/complications ; Melioidosis/diagnosis ; Melioidosis/drug therapy ; Honey ; Liver/diagnostic imaging ; Splenic Diseases ; Burkholderia pseudomallei
    Language English
    Publishing date 2023-07-18
    Publishing country England
    Document type Case Reports ; Journal Article
    ZDB-ID 1199985-8
    ISSN 1460-2393 ; 0033-5622 ; 1460-2725
    ISSN (online) 1460-2393
    ISSN 0033-5622 ; 1460-2725
    DOI 10.1093/qjmed/hcad175
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Intra-Abdominal Adhesions and Peritoneal Dialysis: A Challenge, Not a Contraindication.

    Hsu, Caroline M / Varma, Manish / Weiner, Daniel E

    Clinical journal of the American Society of Nephrology : CJASN

    2024  Volume 19, Issue 4, Page(s) 412–414

    MeSH term(s) Humans ; Contraindications ; Peritoneal Dialysis/adverse effects
    Language English
    Publishing date 2024-04-10
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2226665-3
    ISSN 1555-905X ; 1555-9041
    ISSN (online) 1555-905X
    ISSN 1555-9041
    DOI 10.2215/CJN.0000000000000447
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Diagnostic insights into disseminated histoplasmosis: a case report highlighting bone marrow analysis.

    Kaushik, Vaanya / Khanna, Ruchee / Khanna, Vinay / Varma, Muralidhar

    Iranian journal of microbiology

    2024  Volume 16, Issue 1, Page(s) 155–158

    Abstract: We present a case of a 43-year-old immunocompromised female patient diagnosed with disseminated histoplasmosis on bone marrow examination, at clinical laboratory of Kasturba Hospital, Manipal, Karnataka, India. The patient, presenting with symptoms like ... ...

    Abstract We present a case of a 43-year-old immunocompromised female patient diagnosed with disseminated histoplasmosis on bone marrow examination, at clinical laboratory of Kasturba Hospital, Manipal, Karnataka, India. The patient, presenting with symptoms like weight loss, appetite loss, and pancytopenia, underwent bone marrow aspiration and biopsy. The bone marrow studies revealed HIV-associated changes and the yeast form of
    Language English
    Publishing date 2024-04-26
    Publishing country Iran
    Document type Case Reports
    ZDB-ID 2652849-6
    ISSN 2008-4447 ; 2008-3289
    ISSN (online) 2008-4447
    ISSN 2008-3289
    DOI 10.18502/ijm.v16i1.14886
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Gleason Grading: There Is No Substitute for Judgment.

    Varma, Murali

    The American journal of surgical pathology

    2018  Volume 43, Issue 2, Page(s) 290–291

    MeSH term(s) Biopsy, Needle ; Humans ; Judgment ; Male ; Neoplasm Grading ; Neoplasms ; Prostatectomy
    Language English
    Publishing date 2018-11-16
    Publishing country United States
    Document type Letter ; Comment
    ZDB-ID 752964-8
    ISSN 1532-0979 ; 0147-5185
    ISSN (online) 1532-0979
    ISSN 0147-5185
    DOI 10.1097/PAS.0000000000001175
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Low risk cancer: recalibrate rather than just rename?

    Varma, Murali

    BMJ (Clinical research ed.)

    2018  Volume 363, Page(s) k4211

    MeSH term(s) Humans ; Neoplasms ; Risk
    Language English
    Publishing date 2018-10-09
    Publishing country England
    Document type Letter
    ZDB-ID 1362901-3
    ISSN 1756-1833 ; 0959-8154 ; 0959-8146 ; 0959-8138 ; 0959-535X ; 1759-2151
    ISSN (online) 1756-1833
    ISSN 0959-8154 ; 0959-8146 ; 0959-8138 ; 0959-535X ; 1759-2151
    DOI 10.1136/bmj.k4211
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Distribution of cholesterol in asymmetric membranes driven by composition and differential stress.

    Varma, Malavika / Deserno, Markus

    Biophysical journal

    2022  Volume 121, Issue 20, Page(s) 4001–4018

    Abstract: Many lipid membranes of eukaryotic cells are asymmetric, which means the two leaflets differ in at least one physical property, such as lipid composition or lateral stress. Maintaining this asymmetry is helped by the fact that ordinary phospholipids ... ...

    Abstract Many lipid membranes of eukaryotic cells are asymmetric, which means the two leaflets differ in at least one physical property, such as lipid composition or lateral stress. Maintaining this asymmetry is helped by the fact that ordinary phospholipids rarely transition between leaflets, but cholesterol is an exception: its flip-flop times are in the microsecond range, so that its distribution between leaflets is determined by a chemical equilibrium. In particular, preferential partitioning can draw cholesterol into a more saturated leaflet, and phospholipid number asymmetry can force it out of a compressed leaflet. Combining highly coarse-grained membrane simulations with theoretical modeling, we investigate how these two driving forces play against each other until cholesterol's chemical potential is equilibrated. The theory includes two coupled elastic sheets and a Flory-Huggins mixing free energy with a χ parameter. We obtain a relationship between χ and the interaction strength between cholesterol and lipids in either of the two leaflets, and we find that it depends, albeit weakly, on lipid number asymmetry. The differential stress measurements under various asymmetry conditions agree with our theoretical predictions. Using the two kinds of asymmetries in combination, we find that it is possible to counteract the phospholipid number bias, and the resultant stress in the membrane, via the control of cholesterol mixing in the leaflets.
    MeSH term(s) Lipid Bilayers/chemistry ; Cholesterol/chemistry ; Phospholipids/chemistry ; Entropy
    Chemical Substances Lipid Bilayers ; Cholesterol (97C5T2UQ7J) ; Phospholipids
    Language English
    Publishing date 2022-08-04
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 218078-9
    ISSN 1542-0086 ; 0006-3495
    ISSN (online) 1542-0086
    ISSN 0006-3495
    DOI 10.1016/j.bpj.2022.07.032
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Clinical utility of histopathology data: urological cancers.

    Varma, Murali / Williamson, Sean

    Journal of clinical pathology

    2022  Volume 75, Issue 8, Page(s) 506–513

    Abstract: Cancer datasets recommend standardised reporting of histopathological data items with elements categorised as either core (required) or non-core (recommended), irrespective of the clinical scenario. However, the clinical significance of a data item in an ...

    Abstract Cancer datasets recommend standardised reporting of histopathological data items with elements categorised as either core (required) or non-core (recommended), irrespective of the clinical scenario. However, the clinical significance of a data item in an individual case would depend on the clinicopathological setting as well as local management guidelines. A data item that is critical for patient management in one clinical scenario may be largely irrelevant in another patient. Pathologists must understand how their data are used in clinical practice so that they can focus their limited resources appropriately. We briefly review the use of histopathological data in the management of urological cancers, highlighting scenarios where a data item may be of limited clinical utility.
    MeSH term(s) Humans ; Pathologists ; Urologic Neoplasms/diagnosis ; Urologic Neoplasms/pathology
    Language English
    Publishing date 2022-07-19
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 80261-x
    ISSN 1472-4146 ; 0021-9746
    ISSN (online) 1472-4146
    ISSN 0021-9746
    DOI 10.1136/jclinpath-2022-208186
    Database MEDical Literature Analysis and Retrieval System OnLINE

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