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  1. AU="Viswanathan, Thiruselvam"
  2. AU="Rexach, Irene"
  3. AU="CUI Yongchun"

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  1. Artikel ; Online: The ArsQ permease and transport of the antibiotic arsinothricin.

    Paul, Ngozi P / Viswanathan, Thiruselvam / Chen, Jian / Yoshinaga, Masafumi / Rosen, Barry P

    Molecular microbiology

    2023  Band 119, Heft 4, Seite(n) 505–514

    Abstract: The pentavalent organoarsenical arsinothricin (AST) is a natural product synthesized by the rhizosphere bacterium Burkholderia gladioli GSRB05. AST is a broad-spectrum antibiotic effective against human pathogens such as carbapenem-resistant Enterobacter ...

    Abstract The pentavalent organoarsenical arsinothricin (AST) is a natural product synthesized by the rhizosphere bacterium Burkholderia gladioli GSRB05. AST is a broad-spectrum antibiotic effective against human pathogens such as carbapenem-resistant Enterobacter cloacae. It is a non-proteogenic amino acid and glutamate mimetic that inhibits bacterial glutamine synthetase. The AST biosynthetic pathway is composed of a three-gene cluster, arsQML. ArsL catalyzes synthesis of reduced trivalent hydroxyarsinothricin (R-AST-OH), which is methylated by ArsM to the reduced trivalent form of AST (R-AST). In the culture medium of B. gladioli, both trivalent species appear as the corresponding pentavalent arsenicals, likely due to oxidation in air. ArsQ is an efflux permease that is proposed to transport AST or related species out of the cells, but the chemical nature of the actual transport substrate is unclear. In this study, B. gladioli arsQ was expressed in Escherichia coli and shown to confer resistance to AST and its derivatives. Cells of E. coli accumulate R-AST, and exponentially growing cells expressing arsQ take up less R-AST. The cells exhibit little transport of their pentavalent forms. Transport was independent of cellular energy and appears to be equilibrative. A homology model of ArsQ suggests that Ser320 is in the substrate binding site. A S320A mutant exhibits reduced R-AST-OH transport, suggesting that it plays a role in ArsQ function. The ArsQ permease is proposed to be an energy-independent uniporter responsible for downhill transport of the trivalent form of AST out of cells, which is oxidized extracellularly to the active form of the antibiotic.
    Mesh-Begriff(e) Humans ; Membrane Transport Proteins/metabolism ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/metabolism ; Escherichia coli/metabolism ; Arsenicals/metabolism ; Escherichia coli Proteins/metabolism ; Symporters/metabolism ; Biological Transport, Active
    Chemische Substanzen Membrane Transport Proteins ; arsinothricin ; Anti-Bacterial Agents ; Arsenicals ; Escherichia coli Proteins ; Symporters
    Sprache Englisch
    Erscheinungsdatum 2023-02-24
    Erscheinungsland England
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 619315-8
    ISSN 1365-2958 ; 0950-382X
    ISSN (online) 1365-2958
    ISSN 0950-382X
    DOI 10.1111/mmi.15045
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  2. Artikel ; Online: Editorial: Developing therapeutics for antimicrobial resistant pathogens.

    Veerapandian, Raja / Abdul Azees, Parveez Ahamed / Viswanathan, Thiruselvam / Amaechi, Bennett Tochukwu / Vediyappan, Govindsamy

    Frontiers in cellular and infection microbiology

    2022  Band 12, Seite(n) 1083501

    Sprache Englisch
    Erscheinungsdatum 2022-11-24
    Erscheinungsland Switzerland
    Dokumenttyp Editorial
    ZDB-ID 2619676-1
    ISSN 2235-2988 ; 2235-2988
    ISSN (online) 2235-2988
    ISSN 2235-2988
    DOI 10.3389/fcimb.2022.1083501
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  3. Artikel ; Online: Selective Methylation by an ArsM

    Chen, Jian / Galván, Adriana E / Viswanathan, Thiruselvam / Yoshinaga, Masafumi / Rosen, Barry P

    Environmental science & technology

    2022  Band 56, Heft 19, Seite(n) 13858–13866

    Abstract: Arsenic methylation contributes to the formation and diversity of environmental organoarsenicals, an important process in the arsenic biogeochemical cycle. ... ...

    Abstract Arsenic methylation contributes to the formation and diversity of environmental organoarsenicals, an important process in the arsenic biogeochemical cycle. The
    Mesh-Begriff(e) Anti-Bacterial Agents ; Arsenic/metabolism ; Arsenicals/metabolism ; Arsenites/metabolism ; Burkholderia gladioli/metabolism ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Methylation ; Methyltransferases/chemistry ; Methyltransferases/genetics ; Methyltransferases/metabolism ; S-Adenosylmethionine/metabolism
    Chemische Substanzen Anti-Bacterial Agents ; Arsenicals ; Arsenites ; arsinothricin ; S-Adenosylmethionine (7LP2MPO46S) ; Methyltransferases (EC 2.1.1.-) ; Arsenic (N712M78A8G)
    Sprache Englisch
    Erscheinungsdatum 2022-09-16
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, N.I.H., Extramural
    ISSN 1520-5851
    ISSN (online) 1520-5851
    DOI 10.1021/acs.est.2c04324
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  4. Artikel ; Online: A metal ion orients SARS-CoV-2 mRNA to ensure accurate 2'-O methylation of its first nucleotide.

    Viswanathan, Thiruselvam / Misra, Anurag / Chan, Siu-Hong / Qi, Shan / Dai, Nan / Arya, Shailee / Martinez-Sobrido, Luis / Gupta, Yogesh K

    Nature communications

    2021  Band 12, Heft 1, Seite(n) 3287

    Abstract: The SARS-CoV-2 nsp16/nsp10 enzyme complex modifies the 2'-OH of the first transcribed nucleotide of the viral mRNA by covalently attaching a methyl group to it. The 2'-O methylation of the first nucleotide converts the status of mRNA cap from Cap-0 to ... ...

    Abstract The SARS-CoV-2 nsp16/nsp10 enzyme complex modifies the 2'-OH of the first transcribed nucleotide of the viral mRNA by covalently attaching a methyl group to it. The 2'-O methylation of the first nucleotide converts the status of mRNA cap from Cap-0 to Cap-1, and thus, helps the virus evade immune surveillance in host cells. Here, we report two structures of nsp16/nsp10 representing pre- and post-release states of the RNA product (Cap-1). We observe overall widening of the enzyme upon product formation, and an inward twisting motion in the substrate binding region upon product release. These conformational changes reset the enzyme for the next round of catalysis. The structures also identify a unique binding mode and the importance of a divalent metal ion for 2'-O methylation. We also describe underlying structural basis for the perturbed enzymatic activity of a clinical variant of SARS-CoV-2, and a previous SARS-CoV outbreak strain.
    Mesh-Begriff(e) Amino Acid Sequence ; Binding Sites ; Biocatalysis ; Cloning, Molecular ; Crystallography, X-Ray ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Gene Expression Regulation, Viral ; Humans ; Magnesium/chemistry ; Magnesium/metabolism ; Methylation ; Methyltransferases ; Models, Molecular ; Protein Binding ; Protein Conformation, alpha-Helical ; Protein Conformation, beta-Strand ; Protein Interaction Domains and Motifs ; RNA Caps/chemistry ; RNA Caps/genetics ; RNA Caps/metabolism ; RNA, Viral/chemistry ; RNA, Viral/genetics ; RNA, Viral/metabolism ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Recombinant Proteins/metabolism ; S-Adenosylmethionine/chemistry ; S-Adenosylmethionine/metabolism ; SARS-CoV-2/enzymology ; SARS-CoV-2/genetics ; SARS-CoV-2/ultrastructure ; Sequence Alignment ; Sequence Homology, Amino Acid ; Substrate Specificity ; Viral Nonstructural Proteins/chemistry ; Viral Nonstructural Proteins/genetics ; Viral Nonstructural Proteins/metabolism ; Viral Regulatory and Accessory Proteins/chemistry ; Viral Regulatory and Accessory Proteins/genetics ; Viral Regulatory and Accessory Proteins/metabolism
    Chemische Substanzen NSP10 protein, SARS-CoV-2 ; NSP16 protein, SARS-CoV-2 ; RNA Caps ; RNA, Viral ; Recombinant Proteins ; Viral Nonstructural Proteins ; Viral Regulatory and Accessory Proteins ; S-Adenosylmethionine (7LP2MPO46S) ; Methyltransferases (EC 2.1.1.-) ; Magnesium (I38ZP9992A)
    Sprache Englisch
    Erscheinungsdatum 2021-06-02
    Erscheinungsland England
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-021-23594-y
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  5. Artikel: A metal ion orients mRNA to ensure accurate 2'-

    Viswanathan, Thiruselvam / Misra, Anurag / Chan, Siu-Hong / Qi, Shan / Dai, Nan / Arya, Shailee / Martinez-Sobrido, Luis / Gupta, Yogesh K

    bioRxiv : the preprint server for biology

    2021  

    Abstract: The SARS-CoV-2 nsp16/nsp10 enzyme complex modifies the 2'-OH of the first transcribed nucleotide of the viral mRNA by covalently attaching a methyl group to it. The 2'- ...

    Abstract The SARS-CoV-2 nsp16/nsp10 enzyme complex modifies the 2'-OH of the first transcribed nucleotide of the viral mRNA by covalently attaching a methyl group to it. The 2'-
    Sprache Englisch
    Erscheinungsdatum 2021-03-12
    Erscheinungsland United States
    Dokumenttyp Preprint
    DOI 10.1101/2021.03.12.435174
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  6. Artikel ; Online: Functional and structural characterization of AntR, an Sb(III) responsive transcriptional repressor.

    Viswanathan, Thiruselvam / Chen, Jian / Wu, Minghan / An, Lijin / Kandavelu, Palani / Sankaran, Banumathi / Radhakrishnan, Manohar / Li, Mingshun / Rosen, Barry P

    Molecular microbiology

    2021  Band 116, Heft 2, Seite(n) 427–437

    Abstract: The ant operon of the antimony-mining bacterium Comamonas testosterone JL40 confers resistance to Sb(III). The operon is transcriptionally regulated by the product of the first gene in the operon, antR. AntR is a member of ArsR/SmtB family of metal/ ... ...

    Abstract The ant operon of the antimony-mining bacterium Comamonas testosterone JL40 confers resistance to Sb(III). The operon is transcriptionally regulated by the product of the first gene in the operon, antR. AntR is a member of ArsR/SmtB family of metal/metalloid-responsive repressors resistance. We purified and characterized C. testosterone AntR and demonstrated that it responds to metalloids in the order Sb(III) = methylarsenite (MAs(III) >> As(III)). The protein was crystallized, and the structure was solved at 2.1 Å resolution. The homodimeric structure of AntR adopts a classical ArsR/SmtB topology architecture. The protein has five cysteine residues, of which Cys103
    Mesh-Begriff(e) Amino Acid Sequence ; Antimony/pharmacology ; Arsenic/pharmacology ; Arsenicals/pharmacology ; Binding Sites ; Comamonas testosteroni/drug effects ; Comamonas testosteroni/genetics ; Comamonas testosteroni/metabolism ; Gene Expression Regulation, Bacterial/drug effects ; Gene Expression Regulation, Bacterial/genetics ; Protein Conformation ; Repressor Proteins/drug effects ; Repressor Proteins/metabolism ; Transcription Factors/drug effects ; Transcription Factors/genetics ; Transcription, Genetic/drug effects ; Transcription, Genetic/genetics
    Chemische Substanzen Arsenicals ; Repressor Proteins ; Transcription Factors ; methylarsine ; Antimony (9IT35J3UV3) ; Arsenic (N712M78A8G)
    Sprache Englisch
    Erscheinungsdatum 2021-04-16
    Erscheinungsland England
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 619315-8
    ISSN 1365-2958 ; 0950-382X
    ISSN (online) 1365-2958
    ISSN 0950-382X
    DOI 10.1111/mmi.14721
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  7. Artikel ; Online: A metal ion orients mRNA to ensure accurate 2′-O ribosyl methylation of the first nucleotide of the SARS-CoV-2 genome

    Viswanathan, Thiruselvam / Misra, Anurag / Chan, Siu-Hong / Qi, Shan / Dai, Nan / Arya, Shailee / Martinez-Sobrido, Luis / Gupta, Yogesh K.

    bioRxiv

    Abstract: The SARS-CoV-2 nsp16/nsp10 enzyme complex modifies the 2′-OH of the first transcribed nucleotide of the viral mRNA by covalently attaching a methyl group to it. The 2′-O methylation of the first nucleotide converts the status of mRNA cap from Cap-0 to ... ...

    Abstract The SARS-CoV-2 nsp16/nsp10 enzyme complex modifies the 2′-OH of the first transcribed nucleotide of the viral mRNA by covalently attaching a methyl group to it. The 2′-O methylation of the first nucleotide converts the status of mRNA cap from Cap-0 to Cap-1, and thus, helps the virus evade immune surveillance in the host cell. Here, we report two structures of nsp16/nsp10 representing pre- and post-release states of the RNA product (Cap-1). We observe overall widening of the enzyme upon product formation, and an inward twisting motion in the substrate binding region upon product release. These conformational changes reset the enzyme for the next round of catalysis. The structures also identify a unique binding mode and the importance of a divalent metal ion for 2′-O methylation. We also describe underlying structural basis for the perturbed enzymatic activity of a clinical variant of SARS-CoV-2, and a previous SARS-CoV outbreak strain.
    Schlagwörter covid19
    Sprache Englisch
    Erscheinungsdatum 2021-03-12
    Verlag Cold Spring Harbor Laboratory
    Dokumenttyp Artikel ; Online
    DOI 10.1101/2021.03.12.435174
    Datenquelle COVID19

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  8. Artikel: Structural Basis of RNA Cap Modification by SARS-CoV-2 Coronavirus.

    Viswanathan, Thiruselvam / Arya, Shailee / Chan, Siu-Hong / Qi, Shan / Dai, Nan / Hromas, Robert A / Park, Jun-Gyu / Oladunni, Fatai / Martinez-Sobrido, Luis / Gupta, Yogesh K

    bioRxiv : the preprint server for biology

    2020  

    Abstract: The novel severe acute respiratory syndrome coronoavirus-2 (SARS-CoV-2), the causative agent of COVID-19 illness, has caused over 2 million infections worldwide in four months. In SARS coronaviruses, the non-structural protein 16 (nsp16) methylates the 5' ...

    Abstract The novel severe acute respiratory syndrome coronoavirus-2 (SARS-CoV-2), the causative agent of COVID-19 illness, has caused over 2 million infections worldwide in four months. In SARS coronaviruses, the non-structural protein 16 (nsp16) methylates the 5'-end of virally encoded mRNAs to mimic cellular mRNAs, thus protecting the virus from host innate immune restriction. We report here the high-resolution structure of a ternary complex of full-length nsp16 and nsp10 of SARS-CoV-2 in the presence of cognate RNA substrate and a methyl donor, S-adenosyl methionine. The nsp16/nsp10 heterodimer was captured in the act of 2'-O methylation of the ribose sugar of the first nucleotide of SARS-CoV-2 mRNA. We reveal large conformational changes associated with substrate binding as the enzyme transitions from a binary to a ternary state. This structure provides new mechanistic insights into the 2'-O methylation of the viral mRNA cap. We also discovered a distantly located ligand-binding site unique to SARS-CoV-2 that may serve as an alternative target site for antiviral development.
    Schlagwörter covid19
    Sprache Englisch
    Erscheinungsdatum 2020-04-26
    Erscheinungsland United States
    Dokumenttyp Preprint
    DOI 10.1101/2020.04.26.061705
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  9. Artikel ; Online: Structural basis of RNA cap modification by SARS-CoV-2.

    Viswanathan, Thiruselvam / Arya, Shailee / Chan, Siu-Hong / Qi, Shan / Dai, Nan / Misra, Anurag / Park, Jun-Gyu / Oladunni, Fatai / Kovalskyy, Dmytro / Hromas, Robert A / Martinez-Sobrido, Luis / Gupta, Yogesh K

    Nature communications

    2020  Band 11, Heft 1, Seite(n) 3718

    Abstract: The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), the causative agent of COVID-19 illness, has caused millions of infections worldwide. In SARS coronaviruses, the non-structural protein 16 (nsp16), in conjunction with nsp10, methylates ... ...

    Abstract The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), the causative agent of COVID-19 illness, has caused millions of infections worldwide. In SARS coronaviruses, the non-structural protein 16 (nsp16), in conjunction with nsp10, methylates the 5'-end of virally encoded mRNAs to mimic cellular mRNAs, thus protecting the virus from host innate immune restriction. We report here the high-resolution structure of a ternary complex of SARS-CoV-2 nsp16 and nsp10 in the presence of cognate RNA substrate analogue and methyl donor, S-adenosyl methionine (SAM). The nsp16/nsp10 heterodimer is captured in the act of 2'-O methylation of the ribose sugar of the first nucleotide of SARS-CoV-2 mRNA. We observe large conformational changes associated with substrate binding as the enzyme transitions from a binary to a ternary state. This induced fit model provides mechanistic insights into the 2'-O methylation of the viral mRNA cap. We also discover a distant (25 Å) ligand-binding site unique to SARS-CoV-2, which can alternatively be targeted, in addition to RNA cap and SAM pockets, for antiviral development.
    Mesh-Begriff(e) Betacoronavirus ; COVID-19 ; Coronavirus Infections/virology ; Humans ; Methyltransferases/chemistry ; Methyltransferases/metabolism ; Models, Chemical ; Models, Molecular ; Pandemics ; Pneumonia, Viral/virology ; RNA Caps/metabolism ; RNA, Viral/metabolism ; S-Adenosylmethionine/metabolism ; SARS-CoV-2 ; Viral Nonstructural Proteins/chemistry ; Viral Nonstructural Proteins/metabolism ; Viral Regulatory and Accessory Proteins/chemistry ; Viral Regulatory and Accessory Proteins/metabolism ; X-Ray Diffraction
    Chemische Substanzen NSP10 protein, SARS-CoV-2 ; NSP16 protein, SARS-CoV-2 ; RNA Caps ; RNA, Viral ; Viral Nonstructural Proteins ; Viral Regulatory and Accessory Proteins ; S-Adenosylmethionine (7LP2MPO46S) ; Methyltransferases (EC 2.1.1.-) ; RNA 2'-O-methyltransferase (EC 2.1.1.-)
    Schlagwörter covid19
    Sprache Englisch
    Erscheinungsdatum 2020-07-24
    Erscheinungsland England
    Dokumenttyp Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-020-17496-8
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  10. Artikel ; Online: cis-Chlorido(ethylamine)bis(propane-1,3-diamine)cobalt(III) dichloride

    Mondikalipudur Nanjappa Gounder Ponnuswamy / Krishnamoorthy Anbalagan / Munisamy Manjunathan / Viswanathan Thiruselvam / Velusamy Maheshwaran

    Acta Crystallographica Section E, Vol 69, Iss 3, Pp m170-m

    2013  Band 171

    Abstract: In the title compound, [CoCl(C2H7N)(C3H10N2)2]Cl2, the CoIII ion has a distorted octahedral coordination environment and is surrounded by four N atoms in the equatorial plane, with the other N and Cl atoms occupying the axial positions. The crystal ... ...

    Abstract In the title compound, [CoCl(C2H7N)(C3H10N2)2]Cl2, the CoIII ion has a distorted octahedral coordination environment and is surrounded by four N atoms in the equatorial plane, with the other N and Cl atoms occupying the axial positions. The crystal packing is stabilized by N—H.Cl hydrogen bonds, forming a layered arrangement parallel to (1-10).
    Schlagwörter Chemistry ; QD1-999
    Sprache Englisch
    Erscheinungsdatum 2013-03-01T00:00:00Z
    Verlag International Union of Crystallography
    Dokumenttyp Artikel ; Online
    Datenquelle BASE - Bielefeld Academic Search Engine (Lebenswissenschaftliche Auswahl)

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