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  1. Article ; Online: Crystal structure and Hirshfeld surface analysis of ethyl (4R,4aS)-2-methyl-5,8-dioxo-6-phenyl-4a,5,6,7,7a,8-hexahydro-4H-furo[2,3-f]isoindole-4-carboxylate

    Vladimir P. Zaytsev / Lala V. Chervyakova / Elena A. Sorokina / Kirill A. Vasilyev / Sevim Türktekin Çelikesir / Mehmet Akkurt / Ajaya Bhattarai

    Acta Crystallographica Section E: Crystallographic Communications, Vol 77, Iss 2, Pp 86-

    2021  Volume 90

    Abstract: In the title compound, C20H19NO5, the central six-membered ring has a slightly distorted half-chair conformation, with puckering parameters of QT = 0.3387 (11) Å, θ = 49.11 (19)° and φ = 167.3 (2)°. The conformation of the fused pyrrolidine ring is that ... ...

    Abstract In the title compound, C20H19NO5, the central six-membered ring has a slightly distorted half-chair conformation, with puckering parameters of QT = 0.3387 (11) Å, θ = 49.11 (19)° and φ = 167.3 (2)°. The conformation of the fused pyrrolidine ring is that of an envelope. Molecules are connected by intermolecular C—H.O hydrogen bonds, C—H.π interactions and π–π stacking interactions [centroid-to-centroid distance = 3.9536 (11) Å, with a slippage of 2.047 Å], forming a three-dimensional network. The most important contributions to the surface contacts are from H.H (46.3%), O.H/H.O (31.5%) and C.H/H.C (17.3%) interactions, as concluded from a Hirshfeld surface analysis.
    Keywords crystal structure ; six-membered ring ; pyrrolidine ring ; furan ring ; hirshfeld analysis ; imdav reaction ; Chemistry ; QD1-999
    Language English
    Publishing date 2021-02-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: On the Importance of Halogen Bonding Interactions in Two X-ray Structures Containing All Four (F, Cl, Br, I) Halogen Atoms

    Dmitriy F. Mertsalov / Rosa M. Gomila / Vladimir P. Zaytsev / Mikhail S. Grigoriev / Eugeniya V. Nikitina / Fedor I. Zubkov / Antonio Frontera

    Crystals, Vol 11, Iss 1406, p

    2021  Volume 1406

    Abstract: This manuscript reports the synthesis and X-ray characterization of two octahydro-1H-4,6-epoxycyclopenta[ c ]pyridin-1-one derivatives that contain the four most abundant halogen atoms (Ha) in the structure with the aim of studying the formation of Ha··· ... ...

    Abstract This manuscript reports the synthesis and X-ray characterization of two octahydro-1H-4,6-epoxycyclopenta[ c ]pyridin-1-one derivatives that contain the four most abundant halogen atoms (Ha) in the structure with the aim of studying the formation of Ha···Ha halogen bonding interactions. The anisotropy of electron density at the heavier halogen atoms provokes the formation of multiple Ha···Ha contacts in the solid state. That is, the heavier Ha-atoms exhibit a region of positive electrostatic potential (σ-hole) along the C–Ha bond and a belt of negative electrostatic potential (σ-lumps) around the atoms. The halogen bonding assemblies in both compounds were analyzed using density functional theory (DFT) calculations, molecular electrostatic potential (MEP) surfaces, the quantum theory of “atom-in-molecules” (QTAIM), the noncovalent interaction plot (NCIplot), and the electron localization function (ELF).
    Keywords halogen bonding ; crystal engineering ; supramolecular chemistry ; σ-hole ; Crystallography ; QD901-999
    Subject code 540 ; 541
    Language English
    Publishing date 2021-11-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Crystal structure of 3-benzyl-2-[(E)-2-(furan-2-yl)ethenyl]-2,3-dihydroquinazolin-4(1H)-one and 3-benzyl-2-[(E)-2-(thiophen-2-yl)ethenyl]-2,3-dihydroquinazolin-4(1H)-one from synchrotron X-ray diffraction

    Flavien A. A. Toze / Vladimir P. Zaytsev / Lala V. Chervyakova / Elisaveta A. Kvyatkovskaya / Pavel V. Dorovatovskii / Victor N. Khrustalev

    Acta Crystallographica Section E: Crystallographic Communications, Vol 74, Iss 1, Pp 10-

    2018  Volume 14

    Abstract: The chiral title compounds, C21H18N2O2, (I), and C21H18N2OS, (II) – products of the three-component reaction between benzylamine, isatoic anhydride and furyl- or thienyl-acrolein – are isostructural and form isomorphous racemic crystals. The ... ...

    Abstract The chiral title compounds, C21H18N2O2, (I), and C21H18N2OS, (II) – products of the three-component reaction between benzylamine, isatoic anhydride and furyl- or thienyl-acrolein – are isostructural and form isomorphous racemic crystals. The tetrahydropyrimidine ring in (I) and (II) adopts a sofa conformation. The amino N atom has a trigonal–pyramidal geometry [sum of the bond angles is 347.0° for both (I) and (II)], whereas the amido N atom is flat [sum of the bond angles is 359.3° for both (I) and (II)]. The furyl- and thienylethenyl substituents in (I) and (II) are planar and the conformation about the bridging C=C bond is E. These bulky fragments occupy the axial position at the quaternary C atom of the tetrahydropyrimidine ring, apparently, due to steric reasons. In the crystals, molecules of (I) and (II) form hydrogen-bonded helicoidal chains propagating along [010] by strong intermolecular N—H.O hydrogen bonds.
    Keywords crystal structure ; 2-ethenylquinazolines ; furyl-acrolein ; thienyl-acrolein ; three-component reaction ; synchrotron radiation ; Chemistry ; QD1-999
    Subject code 540
    Language English
    Publishing date 2018-01-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Interaction between maleic acid and N-R-furfurylamines

    Elisaveta A. Kvyatkovskaya / Vladimir P. Zaytsev / Fedor I. Zubkov / Pavel V. Dorovatovskii / Yan V. Zubavichus / Victor N. Khrustalev

    Acta Crystallographica Section E: Crystallographic Communications, Vol 73, Iss 4, Pp 515-

    crystal structure of 2-methyl-N-[(5-phenylfuran-2-yl)methyl]propan-2-aminium (2Z)-3-carboxyacrylate and N-[(5-iodofuran-2-yl)methyl]-2-methylpropan-2-aminium (2Z)-3-carboxyprop-2-enoate

    2017  Volume 519

    Abstract: The title molecular salts, C15H20NO+·C4H3O4−, (I), and C9H15INO+·C4H3O4−, (II), have very similar molecular geometries for both cation and anion. The anions of both (I) and (II) are practically planar (r.m.s. deviations = 0.062 and 0.072 Å, respectively) ...

    Abstract The title molecular salts, C15H20NO+·C4H3O4−, (I), and C9H15INO+·C4H3O4−, (II), have very similar molecular geometries for both cation and anion. The anions of both (I) and (II) are practically planar (r.m.s. deviations = 0.062 and 0.072 Å, respectively) and adopt a rare symmetrical geometry with the hydroxy H atom approximately equidistant from the two O atoms. In their crystals, the cations and anions in both (I) and (II) form tight ionic pairs via strong N—H.O hydrogen bonds, with a roughly perpendicular disposition of the anion to the furan ring of the cation. This ion-pair conformation appears to correlate with the lack of reactivity of these salts in [4 + 2] cycloaddition reactions. In the extended structures of (I) and (II), the ion pairs form hydrogen-bonded chains propagating along [010] and [001], respectively, via N—H.O hydrogen bonds.
    Keywords furans ; Diels–Alder reaction ; maleates ; crystal structure ; synchrotron radiation ; Chemistry ; QD1-999
    Subject code 540
    Language English
    Publishing date 2017-04-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Three-component reaction between isatoic anhydride, amine and methyl-substituted furylacrylaldehydes

    Vladimir P. Zaytsev / Elena A. Sorokina / Elisaveta A. Kvyatkovskaya / Flavien A. A. Toze / Shashank N. Mhaldar / Pavel V. Dorovatovskii / Victor N. Khrustalev

    Acta Crystallographica Section E: Crystallographic Communications, Vol 74, Iss 8, Pp 1101-

    crystal structures of 3-benzyl-2-[(E)-2-(5-methylfuran-2-yl)vinyl]-2,3-dihydroquinazolin-4(1H)-one, 3-benzyl-2-[(E)-2-(furan-2-yl)-1-methylvinyl]-2,3-dihydroquinazolin-4(1H)-one and 3-(furan-2-ylmethyl)-2-[(E)-2-(furan-2-yl)-1-methylvinyl]-2,3-dihydroquinazolin-4(1H)-one

    2018  Volume 1106

    Abstract: Compounds (I), C22H20N2O2, (II), C22H20N2O2 and (III), C20H18N2O3 are the products of three-component reactions between isatoic anhydride, the corresponding amine and 3-(5-methylfuran-2-yl)- or (furan-2-yl)-2-methylacrylaldehyde. Compound (I) ... ...

    Abstract Compounds (I), C22H20N2O2, (II), C22H20N2O2 and (III), C20H18N2O3 are the products of three-component reactions between isatoic anhydride, the corresponding amine and 3-(5-methylfuran-2-yl)- or (furan-2-yl)-2-methylacrylaldehyde. Compound (I) crystallizes in the monoclinic space group P21/n, while compounds (II) and (III) are isostructural and crystallize in the orthorhombic space group Pbca. The tetrahydropyrimidine ring in (I)–(III) adopts a sofa conformation. The NH nitrogen atom has a trigonal–pyramidal geometry, whereas the N(R) nitrogen atom is flattened. The furyl-vinyl substituents in (I)–(III) are practically planar and have an E configuration at the C=C double bond. In (I), this bulky fragment occupies the axial position at the quaternary carbon atom of the tetrahydropyrimidine ring, whereas in (II) and (III) it is equatorially disposed. In the crystal of (I), molecules form hydrogen-bonded chains propagating along [001] by strong intermolecular N—H.O hydrogen bonds. The chains are packed in stacks along the a-axis direction. In the crystals of (II) and (III), molecules also form hydrogen-bonded chains propagating along [100] by strong intermolecular N—H.O hydrogen bonds. However, despite the fact that compounds (II) and (III) are isostructural, steric differences between the phenyl and furyl substituents result in chains with different geometries. Thus in the crystal of (II) the chains have a zigzag-like structure, whereas in the crystal of (III), they are almost linear. In both (II) and (III), the hydrogen-bonded chains are further packed in stacks along the b-axis direction.
    Keywords furans ; quinazolinones ; acid anhydrides ; three-component reaction ; crystal structure ; synchrotron radiation ; Chemistry ; QD1-999
    Subject code 540
    Language English
    Publishing date 2018-08-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Crystal strucutre of rac-methyl (11aR*,12S*,13R*,15aS*,15bS*)-11-oxo-11,11a,12,13-tetrahydro-9H,15bH-13,15a-epoxyisoindolo[1,2-c]pyrrolo[1,2-a][1,4]benzodiazepine-12-carboxylate

    Vladimir P. Zaytsev / Daria N. Orlova / Atash V. Gurbanov / Fedor I. Zubkov / Victor N. Khrustalev

    Acta Crystallographica Section E, Vol 70, Iss 12, Pp o1225-o

    2014  Volume 1226

    Abstract: The title compound, C21H18N2O4, obtained as a racemate, contains a novel heterocyclic system, viz. isoindolo[1,2-c]pyrrolo[1,2-a][1,4]benzodiazepine. The central diazepane ring has a distorted boat conformation with two phenylene-fused and one methine C ... ...

    Abstract The title compound, C21H18N2O4, obtained as a racemate, contains a novel heterocyclic system, viz. isoindolo[1,2-c]pyrrolo[1,2-a][1,4]benzodiazepine. The central diazepane ring has a distorted boat conformation with two phenylene-fused and one methine C atom deviating by 0.931 (1), 0.887 (1) and 0.561 (1) Å, respectively, from the mean plane of the rest of the ring. The γ-lactone ring has an envelope conformation, with the C atom opposite to amide bond deviating by 0.355 (1) Å from its plane. In the crystal, molecules form centrosymmetric dimers through pairs of C—H.O hydrogen bonds.
    Keywords crystals structure ; isoindolylpyrroles ; benzodiazepines ; IMDAF reaction ; hydrogen bonds ; Chemistry ; QD1-999
    Language English
    Publishing date 2014-12-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article: First example of the cascade acylation/IMDAV/ene reaction sequence, leading to N-arylbenzo[f]isoindole-4-carboxylic acids possessing anti-viral activity

    Voronov, Alexander A / Kseniia A. Alekseeva / Elena A. Ryzhkova / Vladimir V. Zarubaev / Anastasia V. Galochkina / Vladimir P. Zaytsev / Mahesh S. Majik / Santosh G. Tilve / Atash V. Gurbanov / Fedor I. Zubkov

    Tetrahedron letters. 2018 Mar. 21, v. 59, no. 12

    2018  

    Abstract: The reaction between readily accessible N-aryl-3-phenylallylamines and maleic anhydride led to unexpected products – polysubstituted hydrogenated benzo[f]isoindole-4-carboxylic acids. This transformation proceeds through a previously unknown sequence of ... ...

    Abstract The reaction between readily accessible N-aryl-3-phenylallylamines and maleic anhydride led to unexpected products – polysubstituted hydrogenated benzo[f]isoindole-4-carboxylic acids. This transformation proceeds through a previously unknown sequence of steps: N-acylation of the allylamine with maleic anhydride, intramolecular Diels-Alder reaction of the vinylarene in the intermediate N-maleamide, and Alder-ene reaction of the products of the previous two steps. Selected benzo[f]isoindoles displayed antiviral activity.
    Keywords acylation ; antiviral properties ; carboxylic acids ; chemical structure ; maleic anhydrides
    Language English
    Dates of publication 2018-0321
    Size p. 1108-1111.
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 204287-3
    ISSN 1873-3581 ; 0040-4039
    ISSN (online) 1873-3581
    ISSN 0040-4039
    DOI 10.1016/j.tetlet.2018.02.015
    Database NAL-Catalogue (AGRICOLA)

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  8. Article ; Online: rac-Methyl (3aR*,4S*,5R*,7aR*)-5,7a-bis(acetyloxy)-3-oxo-2-phenyloctahydro-1H-isoindole-4-carboxylate

    Flavien A. A. Toze / Eugeniya V. Nikitina / Vladimir P. Zaytsev / Fedor I. Zubkov / Victor N. Khrustalev

    Acta Crystallographica Section E, Vol 69, Iss 10, Pp o1555-o

    2013  Volume 1555

    Abstract: The title molecule, C20H23NO7, the product of nucleophilic cleavage of the 3a,6-epoxy bridge in 1-oxo-2-phenyloctahydro-3a,6-epoxyisoindole-7-carboxylate, comprises a cis-fused bicyclic system containing a 2-pyrrolidinone ring in an envelope conformation ...

    Abstract The title molecule, C20H23NO7, the product of nucleophilic cleavage of the 3a,6-epoxy bridge in 1-oxo-2-phenyloctahydro-3a,6-epoxyisoindole-7-carboxylate, comprises a cis-fused bicyclic system containing a 2-pyrrolidinone ring in an envelope conformation (with the C atom bearing the carboxylate substituent as the flap) and a cyclohexane ring in a chair conformation. The carboxylate substituent occupies the equatorial position, whereas the two acetyloxy substituents are in axial positions. The N atom has a trigonal-planar geometry, the sum of the bond angles being 359.3 (3)°. The dihedral angle between the mean plane of the four planar atoms of the pyrrolidinone ring and the phenyl ring is 25.98 (6)°. In the crystal, molecules are linked into zigzag chains along the c-axis direction by C—H.O hydrogen bonds.
    Keywords Chemistry ; QD1-999
    Language English
    Publishing date 2013-10-01T00:00:00Z
    Publisher International Union of Crystallography
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article: The Intramolecular Diels-Alder Vinylthiophen (IMDAV) Reaction: an Easy Approach to Thieno[2,3-f]isoindole-4-carboxylic Acids

    Horak, Yuriy I / Roman Z. Lytvyn / Yevhen-Oleh V. Laba / Yuriy V. Homza / Vladimir P. Zaytsev / Maryana A. Nadirova / Tatiana V. Nikanorova / Fedor I. Zubkov / Alexey V. Varlamov / Mykola D. Obushak

    Tetrahedron letters. 2017,

    2017  

    Abstract: The reaction of readily accessible 3-(thien-2-yl)allylamines with maleic anhydride, followed by a domino sequence involving successive acylation / [4+2] cycloaddition steps, leads to the formation of the thieno[2,3-f]isoindole core. The key step, the ... ...

    Abstract The reaction of readily accessible 3-(thien-2-yl)allylamines with maleic anhydride, followed by a domino sequence involving successive acylation / [4+2] cycloaddition steps, leads to the formation of the thieno[2,3-f]isoindole core. The key step, the intramolecular Diels-Alder vinylaren (IMDAV) reaction, proceeds with high level of diastereoselectivity and with formation of a single diastereoisomer of the target product 4,4a,5,6,7,7a-hexahydro-3aH-thieno[2,3-f]isoindole-4-carboxylic acids in excellent yields. If the reaction is carried out at room temperature, it occurs in 2-3 days and the proton migration (H-shift) does not take place at the last stage. In boiling benzene, the reaction is complete after three hours, but in this case a slight impurity of byproducts bearing aromatic thiophene ring - 4a,5,6,7,7a,8-hexahydro-4H-thieno[2,3-f]isoindole-4-carboxylic acids is formed.
    Keywords acylation ; ambient temperature ; benzene ; boiling ; byproducts ; carboxylic acids ; chemical structure ; cycloaddition reactions ; maleic anhydrides ; thiophene
    Language English
    Size p. .
    Publishing place Elsevier Ltd
    Document type Article
    Note Pre-press version
    ZDB-ID 204287-3
    ISSN 1873-3581 ; 0040-4039
    ISSN (online) 1873-3581
    ISSN 0040-4039
    DOI 10.1016/j.tetlet.2017.09.038
    Database NAL-Catalogue (AGRICOLA)

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  10. Article: General synthetic approach towards annelated 3a,6-epoxyisoindoles by tandem acylation/IMDAF reaction of furylazaheterocycles. Scope and limitations

    Zubkov, Fedor I / Alexey V. Varlamov / Daria N. Orlova / Eugenia V. Nikitina / Roman A. Novikov / Timur R. Galeev / Victor N. Khrustalev / Vladimir P. Zaytsev

    Tetrahedron. 2014 Feb. 25, v. 70

    2014  

    Abstract: An efficient and versatile one-pot synthesis of 3,6a-epoxyisoindoles annelated with oxazine, oxazole, thiazine, thiazole, pyrimidine fragments and with their benzoannelated analogues is presented. The method is based on tandem N-acylation/intramolecular ... ...

    Abstract An efficient and versatile one-pot synthesis of 3,6a-epoxyisoindoles annelated with oxazine, oxazole, thiazine, thiazole, pyrimidine fragments and with their benzoannelated analogues is presented. The method is based on tandem N-acylation/intramolecular cycloaddition (the intramolecular Diels–Alder reaction of furan, IMDAF) reaction between α,β-unsaturated acid anhydrides and α-furyl substituted azaheterocycles. The latter can be easily prepared by condensation of diverse furfurals and 1,2- or 1,3-N,X-binucleophiles (aminoalcohols, aminothiols, diamines). The observed IMDAF reaction is stereoselective: exo-adducts are formed exclusively with large prevalence of one of the diastereoisomers. In most cases, the condensation/N-acylation/IMDAF reaction sequence may be carried out via a one-pot domino protocol. The scope and limitations of the proposed approach are thoroughly investigated. The obtained Diels–Alder adducts are attractive and useful substrates for further transformations. Fused isoindoles can be prepared from them in one-step by aromatization of the 7-oxabicyclo[2.2.1]heptene ring. Other transformations, including halogenation, ring cleavage, and Wagner–Meerwein skeletal rearrangement, are also demonstrated. The spatial structures of the obtained compounds have been established by X-ray diffraction analyses.
    Keywords acylation ; amino alcohols ; anhydrides ; cycloaddition reactions ; diamines ; diastereomers ; oxazoles ; stereochemistry ; synthesis ; thiazoles ; X-ray diffraction
    Language English
    Dates of publication 2014-0225
    Size p. 1659-1690.
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 204285-x
    ISSN 1464-5416 ; 0040-4020 ; 0563-2064
    ISSN (online) 1464-5416
    ISSN 0040-4020 ; 0563-2064
    DOI 10.1016/j.tet.2014.01.008
    Database NAL-Catalogue (AGRICOLA)

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