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  1. Article ; Online: Viral load of SARS-CoV-2 in surgical smoke in minimally invasive and open surgery: a single-center prospective clinical trial.

    Cizmic, Amila / Eichel, Vanessa M / Weidner, Niklas M / Wise, Philipp A / Müller, Felix / Rompen, Ingmar F / Bartenschlager, Ralf / Schnitzler, Paul / Nickel, Felix / Müller-Stich, Beat P

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 20299

    Abstract: At the beginning of the COVID-19 pandemic, it was assumed that SARS-CoV-2 could be transmitted through surgical smoke generated by electrocauterization. Minimally invasive surgery (MIS) was targeted due to potentially higher concentrations of the SARS- ... ...

    Abstract At the beginning of the COVID-19 pandemic, it was assumed that SARS-CoV-2 could be transmitted through surgical smoke generated by electrocauterization. Minimally invasive surgery (MIS) was targeted due to potentially higher concentrations of the SARS-CoV-2 particles in the pneumoperitoneum. Some surgical societies even recommended open surgery instead of MIS to prevent the potential spread of SARS-CoV-2 from the pneumoperitoneum. This study aimed to detect SARS-CoV-2 in surgical smoke during open and MIS. Patients with SARS-CoV-2 infection who underwent open surgery or MIS at Heidelberg University Hospital were included in the study. A control group of patients without SARS-CoV-2 infection undergoing MIS or open surgery was included for comparison. The trial was approved by the Ethics Committee of Heidelberg University Medical School (S-098/2021). The following samples were collected: nasopharyngeal and intraabdominal swabs, blood, urine, surgical smoke, and air samples from the operating room. An SKC BioSampler was used to sample the surgical smoke from the pneumoperitoneum during MIS and the approximate surgical field during open surgery in 15 ml of sterilized phosphate-buffered saline. An RT-PCR test was performed on all collected samples to detect SARS-CoV-2 viral particles. Twelve patients with proven SARS-CoV-2 infection underwent open abdominal surgery. Two SARS-CoV-2-positive patients underwent an MIS procedure. The control group included 24 patients: 12 underwent open surgery and 12 MIS. One intraabdominal swab in a patient with SARS-CoV-2 infection was positive for SARS-CoV-2. However, during both open surgery and MIS, none of the surgical smoke samples showed any detectable viral particles of SARS-CoV-2. The air samples collected at the end of the surgical procedure showed no viral particles of SARS-CoV-2. Major complications (CD ≥ IIIa) were more often observed in SARS-CoV-2 positive patients (10 vs. 4, p = 0.001). This study showed no detectable viral particles of SARS-CoV-2 in surgical smoke sampled during MIS and open surgery. Thus, the discussed risk of transmission of SARS-CoV-2 via surgical smoke could not be confirmed in the present study.
    MeSH term(s) Humans ; COVID-19 ; Pandemics/prevention & control ; Pneumoperitoneum ; Prospective Studies ; SARS-CoV-2 ; Smoke ; Viral Load
    Chemical Substances Smoke
    Language English
    Publishing date 2023-11-20
    Publishing country England
    Document type Clinical Trial ; Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-47058-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Scalable RT-LAMP-based SARS-CoV-2 testing for infection surveillance with applications in pandemic preparedness.

    Lou, Dan / Meurer, Matthias / Ovchinnikova, Svetlana / Burk, Robin / Denzler, Anna / Herbst, Konrad / Papaioannou, Ioannis A / Duan, Yuanqiang / Jacobs, Max L / Witte, Victoria / Ürge, Daniel / Kirrmaier, Daniel / Krogemann, Michelle / Gubicza, Krisztina / Boerner, Kathleen / Bundschuh, Christian / Weidner, Niklas M / Merle, Uta / Knorr, Britta /
    Welker, Andreas / Denkinger, Claudia M / Schnitzler, Paul / Kräusslich, Hans-Georg / Dao Thi, Viet Loan / De Allegri, Manuela / Nguyen, Hoa Thi / Deckert, Andreas / Anders, Simon / Knop, Michael

    EMBO reports

    2023  Volume 24, Issue 5, Page(s) e57162

    Abstract: Throughout the SARS-CoV-2 pandemic, limited diagnostic capacities prevented sentinel testing, demonstrating the need for novel testing infrastructures. Here, we describe the setup of a cost-effective platform that can be employed in a high-throughput ... ...

    Abstract Throughout the SARS-CoV-2 pandemic, limited diagnostic capacities prevented sentinel testing, demonstrating the need for novel testing infrastructures. Here, we describe the setup of a cost-effective platform that can be employed in a high-throughput manner, which allows surveillance testing as an acute pandemic control and preparedness tool, exemplified by SARS-CoV-2 diagnostics in an academic environment. The strategy involves self-sampling based on gargling saline, pseudonymized sample handling, automated RNA extraction, and viral RNA detection using a semiquantitative multiplexed colorimetric reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay with an analytical sensitivity comparable with RT-qPCR. We provide standard operating procedures and an integrated software solution for all workflows, including sample logistics, analysis by colorimetry or sequencing, and communication of results. We evaluated factors affecting the viral load and the stability of gargling samples as well as the diagnostic sensitivity of the RT-LAMP assay. In parallel, we estimated the economic costs of setting up and running the test station. We performed > 35,000 tests, with an average turnover time of < 6 h from sample arrival to result announcement. Altogether, our work provides a blueprint for fast, sensitive, scalable, cost- and labor-efficient RT-LAMP diagnostics, which is independent of potentially limiting clinical diagnostics supply chains.
    MeSH term(s) Humans ; SARS-CoV-2/genetics ; COVID-19/diagnosis ; COVID-19/epidemiology ; COVID-19 Testing ; Clinical Laboratory Techniques/methods ; Pandemics/prevention & control ; Sensitivity and Specificity ; RNA, Viral/genetics
    Chemical Substances RNA, Viral
    Language English
    Publishing date 2023-03-23
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2020896-0
    ISSN 1469-3178 ; 1469-221X
    ISSN (online) 1469-3178
    ISSN 1469-221X
    DOI 10.15252/embr.202357162
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Scalable RT-LAMP-based SARS-CoV-2 testing for infection surveillance with applications in pandemic control

    Lou, Dan / Meurer, Matthias / Ovchinnikova, Svetlana / Burk, Robin / Denzler, Anna / Herbst, Konrad / Papaioannou, Ioannis A. / Duan, Yuanqiang / Jacobs, Max L. / Witte, Victoria / Uerge, Daniel / Kirrmaier, Daniel / Krogemann, Michelle / Gubicza, Krisztina / Boerner, Kathleen / Bundschuh, Christian / Weidner, Niklas M. / Merle, Uta / Knorr, Britta /
    Welker, Andreas / Denkinger, Claudia M. / Schnitzler, Paul / Kraeusslich, Hans-Georg / Thi, Viet Loan Dao / Deckert, Andreas / Anders, Simon / Knop, Michael

    medRxiv

    Abstract: Throughout the current SARS-CoV-2 pandemic, limited diagnostic testing capacity prevented sentinel testing of the population, demonstrating the need for novel testing strategies and infrastructures. Here, we describe the set-up of an alternative testing ... ...

    Abstract Throughout the current SARS-CoV-2 pandemic, limited diagnostic testing capacity prevented sentinel testing of the population, demonstrating the need for novel testing strategies and infrastructures. Here, we describe the set-up of an alternative testing platform, which allows scalable surveillance testing as an acute pandemic response tool and for pandemic preparedness purposes, exemplified by SARS-CoV-2 diagnostics in an academic environment. The testing strategy involves self-sampling based on gargling saline, pseudonymized sample handling, automated 96-well plate-based RNA extraction, and viral RNA detection using a semi-quantitative multiplexed colorimetric reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay with an analytical sensitivity comparable to RT-quantitative polymerase chain reaction (RT-qPCR). We provide standard operating procedures and an integrated software solution for all workflows, including sample logistics, LAMP assay analysis by colorimetry or by sequencing (LAMP-seq), and communication of results to participants and the health authorities. Using large sample sets including longitudinal sample series we evaluated factors affecting the viral load and the stability of gargling samples as well as the diagnostic sensitivity of the RT-LAMP assay. We performed >35,000 tests during the pandemic, with an average turnover time of fewer than 6 hours from sample arrival at the test station to result announcement. Altogether, our work provides a blueprint for fast, sensitive, scalable, cost- and labor-efficient RT-LAMP diagnostics. As RT-LAMP-based testing requires advanced, but non-specialized laboratory equipment, it is independent of potentially limiting clinical diagnostics supply chains.
    Keywords covid19
    Language English
    Publishing date 2022-06-27
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2022.06.27.22276704
    Database COVID19

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