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  1. Article ; Online: Motor imagery classification using sparse representations

    José Antonio Alves de Menezes / Juliana Carneiro Gomes / Vitor de Carvalho Hazin / Júlio César Sousa Dantas / Marcelo Cairrão Araújo Rodrigues / Wellington Pinheiro dos Santos

    Scientific Reports, Vol 13, Iss 1, Pp 1-

    an exploratory study

    2023  Volume 24

    Abstract: Abstract The non-stationary nature of the EEG signal poses challenges for the classification of motor imagery. sparse representation classification (SRC) appears as an alternative for classification of untrained conditions and, therefore, useful in motor ...

    Abstract Abstract The non-stationary nature of the EEG signal poses challenges for the classification of motor imagery. sparse representation classification (SRC) appears as an alternative for classification of untrained conditions and, therefore, useful in motor imagery. Empirical mode decomposition (EMD) deals with signals of this nature and appears at the rear of the classification, supporting the generation of features. In this work we evaluate the combination of these methods in a multiclass classification problem, comparing them with a conventional method in order to determine if their performance is regular. For comparison with SRC we use multilayer perceptron (MLP). We also evaluated a hybrid approach for classification of sparse representations with MLP (RSMLP). For comparison with EMD we used filtering by frequency bands. Feature selection methods were used to select the most significant ones, specifically Random Forest and Particle Swarm Optimization. Finally, we used data augmentation to get a more voluminous base. Regarding the first dataset, we observed that the classifiers that use sparse representation have results equivalent to each other, but they outperform the conventional MLP model. SRC and SRMLP achieve an average accuracy of $$75.95\%$$ 75.95 % and $$82.51\%$$ 82.51 % respectively while the MLP is $$72.38\%$$ 72.38 % , representing a gain between $$4.93\%$$ 4.93 % and $$14\%$$ 14 % . The use of EMD in relation to other feature processing techniques is not superior. However, EMD does not influence negatively, there is an opportunity for improvement. Finally, the use of data augmentation proved to be important to obtain relevant results. In the second dataset, we did not observe the same results. Models based on sparse representation (SRC, SRMLP, etc.) have on average a performance close to other conventional models, but without surpassing them. The best sparse models achieve an average accuracy of $$95.43\%$$ 95.43 % among the subjects in the base, while other model reach $$98.33\%$$ 98.33 % . The ...
    Keywords Medicine ; R ; Science ; Q
    Subject code 004
    Language English
    Publishing date 2023-09-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Image Segmentation Techniques for Healthcare Systems

    Orazio Gambino / Vincenzo Conti / Sergio Galdino / Cesare Fabio Valenti / Wellington Pinheiro dos Santos

    Journal of Healthcare Engineering, Vol

    2019  Volume 2019

    Keywords Medicine (General) ; R5-920 ; Medical technology ; R855-855.5
    Language English
    Publishing date 2019-01-01T00:00:00Z
    Publisher Hindawi Limited
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: MEWAR

    Aisha Aldosery / Anwar Musah / Georgiana Birjovanu / Giselle Moreno / Andrei Boscor / Livia Dutra / George Santos / Vania Nunes / Rossandra Oliveira / Tercio Ambrizzi / Tiago Massoni / Wellington Pinheiro dos Santos / Patty Kostkova

    Frontiers in Public Health, Vol

    Development of a Cross-Platform Mobile Application and Web Dashboard System for Real-Time Mosquito Surveillance in Northeast Brazil

    2021  Volume 9

    Abstract: Mosquito surveillance is a crucial process for understanding the population dynamics of mosquitoes, as well as implementing interventional programs for controlling and preventing the spread of mosquito-borne diseases. Environmental surveillance agents ... ...

    Abstract Mosquito surveillance is a crucial process for understanding the population dynamics of mosquitoes, as well as implementing interventional programs for controlling and preventing the spread of mosquito-borne diseases. Environmental surveillance agents who performing routine entomological surveys at properties in areas where mosquito-borne diseases are endemic play a critical role in vector surveillance by searching and destroying mosquito hotspots as well as collate information on locations with increased infestation. Currently, the process of recording information on paper-based forms is time-consuming and painstaking due to manual effort. The introduction of mobile surveillance applications will therefore improve the process of data collection, timely reporting, and field worker performance. Digital-based surveillance is critical in reporting real-time data; indeed, the real-time capture of data with phones could be used for predictive analytical models to predict mosquito population dynamics, enabling early warning detection of hotspots and thus alerting fieldworker agents into immediate action. This paper describes the development of a cross-platform digital system for improving mosquito surveillance in Brazil. It comprises of two components: a dashboard for managers and a mobile application for health agents. The former enables managers to assign properties to health workers who then survey them for mosquitoes and to monitor the progress of inspection visits in real-time. The latter, which is primarily designed as a data collection tool, enables the environmental surveillance agents to act on their assigned tasks of recording the details of the properties at inspections by filling out digital forms built into the mobile application, as well as details relating to mosquito infestation. The system presented in this paper was co-developed with significant input with environmental agents in two Brazilian cities where it is currently being piloted.
    Keywords mobile technology ; real-time ; surveillance ; mosquito ; environmental surveillance agents ; environmental health agents ; Public aspects of medicine ; RA1-1270
    Subject code 333
    Language English
    Publishing date 2021-10-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Temporal and Spatiotemporal Arboviruses Forecasting by Machine Learning

    Clarisse Lins de Lima / Ana Clara Gomes da Silva / Giselle Machado Magalhães Moreno / Cecilia Cordeiro da Silva / Anwar Musah / Aisha Aldosery / Livia Dutra / Tercio Ambrizzi / Iuri V. G. Borges / Merve Tunali / Selma Basibuyuk / Orhan Yenigün / Tiago Lima Massoni / Ella Browning / Kate Jones / Luiza Campos / Patty Kostkova / Abel Guilhermino da Silva Filho / Wellington Pinheiro dos Santos

    Frontiers in Public Health, Vol

    A Systematic Review

    2022  Volume 10

    Abstract: Arboviruses are a group of diseases that are transmitted by an arthropod vector. Since they are part of the Neglected Tropical Diseases that pose several public health challenges for countries around the world. The arboviruses' dynamics are governed by a ...

    Abstract Arboviruses are a group of diseases that are transmitted by an arthropod vector. Since they are part of the Neglected Tropical Diseases that pose several public health challenges for countries around the world. The arboviruses' dynamics are governed by a combination of climatic, environmental, and human mobility factors. Arboviruses prediction models can be a support tool for decision-making by public health agents. In this study, we propose a systematic literature review to identify arboviruses prediction models, as well as models for their transmitter vector dynamics. To carry out this review, we searched reputable scientific bases such as IEE Xplore, PubMed, Science Direct, Springer Link, and Scopus. We search for studies published between the years 2015 and 2020, using a search string. A total of 429 articles were returned, however, after filtering by exclusion and inclusion criteria, 139 were included. Through this systematic review, it was possible to identify the challenges present in the construction of arboviruses prediction models, as well as the existing gap in the construction of spatiotemporal models.
    Keywords digital epidemiology ; computational intelligence ; arboviruses forecast ; machine learning ; systematic review ; dengue ; Public aspects of medicine ; RA1-1270
    Subject code 306
    Language English
    Publishing date 2022-06-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: An Evaluation of the OpenWeatherMap API versus INMET Using Weather Data from Two Brazilian Cities

    Anwar Musah / Livia Màrcia Mosso Dutra / Aisha Aldosery / Ella Browning / Tercio Ambrizzi / Iuri Valerio Graciano Borges / Merve Tunali / Selma Başibüyük / Orhan Yenigün / Giselle Machado Magalhaes Moreno / Ana Clara Gomes da Silva / Wellington Pinheiro dos Santos / Clarisse Lins de Lima / Tiago Massoni / Kate Elizabeth Jones / Luiza Cintra Campos / Patty Kostkova

    Data, Vol 7, Iss 8, p

    Recife and Campina Grande

    2022  Volume 106

    Abstract: Certain weather conditions are inadvertently related to increased population of various mosquitoes. In order to predict the burden of mosquito populations in the Global South, it is imperative to integrate weather-related risk factors into such ... ...

    Abstract Certain weather conditions are inadvertently related to increased population of various mosquitoes. In order to predict the burden of mosquito populations in the Global South, it is imperative to integrate weather-related risk factors into such predictive models. There are a lot of online open-source weather platforms that provide historical, current and future weather forecasts which can be utilised for general predictions, and these electronic sources serve as an alternate option for weather data when physical weather stations are inaccessible (or inactive). Before using data from such online source, it is important to assess the accuracy against some baseline measure. In this paper, we therefore evaluated the accuracy and suitability of weather forecasts of two parameters namely temperature and humidity from the OpenWeatherMap API (an online weather platform) and compared them with actual measurements collected from the Brazilian weather stations (INMET). The evaluation was focused on two Brazilian cites, namely, Recife and Campina Grande. The intention is to prepare an early warning model which will harness data from OpenWeatherMap API for mosquito prediction.
    Keywords weather ; meteorological parameters ; data sources ; OpenWeatherMap ; application programming interfaces ; Bibliography. Library science. Information resources ; Z
    Subject code 333
    Language English
    Publishing date 2022-07-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Covid-19 diagnosis by combining RT-PCR and pseudo-convolutional machines to characterize virus sequences

    Juliana Carneiro Gomes / Aras Ismael Masood / Leandro Honorato de S. Silva / Janderson Romário B. da Cruz Ferreira / Agostinho Antônio Freire Júnior / Allana Laís dos Santos Rocha / Letícia Castro Portela de Oliveira / Nathália Regina Cauás da Silva / Bruno José Torres Fernandes / Wellington Pinheiro dos Santos

    Scientific Reports, Vol 11, Iss 1, Pp 1-

    2021  Volume 28

    Abstract: Abstract The Covid-19 pandemic, a disease transmitted by the SARS-CoV-2 virus, has already caused the infection of more than 120 million people, of which 70 million have been recovered, while 3 million people have died. The high speed of infection has ... ...

    Abstract Abstract The Covid-19 pandemic, a disease transmitted by the SARS-CoV-2 virus, has already caused the infection of more than 120 million people, of which 70 million have been recovered, while 3 million people have died. The high speed of infection has led to the rapid depletion of public health resources in most countries. RT-PCR is Covid-19’s reference diagnostic method. In this work we propose a new technique for representing DNA sequences: they are divided into smaller sequences with overlap in a pseudo-convolutional approach and represented by co-occurrence matrices. This technique eliminates multiple sequence alignment. Through the proposed method, it is possible to identify virus sequences from a large database: 347,363 virus DNA sequences from 24 virus families and SARS-CoV-2. When comparing SARS-CoV-2 with virus families with similar symptoms, we obtained $$0.97 \pm 0.03$$ 0.97 ± 0.03 for sensitivity and $$0.9919 \pm 0.0005$$ 0.9919 ± 0.0005 for specificity with MLP classifier and 30% overlap. When SARS-CoV-2 is compared to other coronaviruses and healthy human DNA sequences, we obtained $$0.99 \pm 0.01$$ 0.99 ± 0.01 for sensitivity and $$0.9986 \pm 0.0002$$ 0.9986 ± 0.0002 for specificity with MLP and 50% overlap. Therefore, the molecular diagnosis of Covid-19 can be optimized by combining RT-PCR and our pseudo-convolutional method to identify DNA sequences for SARS-CoV-2 with greater specificity and sensitivity.
    Keywords Medicine ; R ; Science ; Q
    Subject code 612
    Language English
    Publishing date 2021-06-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: Covid-19 Dynamic Monitoring and Real-Time Spatio-Temporal Forecasting

    Cecilia Cordeiro da Silva / Clarisse Lins de Lima / Ana Clara Gomes da Silva / Eduardo Luiz Silva / Gabriel Souza Marques / Lucas Job Brito de Araújo / Luiz Antônio Albuquerque Júnior / Samuel Barbosa Jatobá de Souza / Maíra Araújo de Santana / Juliana Carneiro Gomes / Valter Augusto de Freitas Barbosa / Anwar Musah / Patty Kostkova / Wellington Pinheiro dos Santos / Abel Guilhermino da Silva Filho

    Frontiers in Public Health, Vol

    2021  Volume 9

    Abstract: Background: Periodically, humanity is often faced with new and emerging viruses that can be a significant global threat. It has already been over a century post—the Spanish Flu pandemic, and we are witnessing a new type of coronavirus, the SARS-CoV-2, ... ...

    Abstract Background: Periodically, humanity is often faced with new and emerging viruses that can be a significant global threat. It has already been over a century post—the Spanish Flu pandemic, and we are witnessing a new type of coronavirus, the SARS-CoV-2, which is responsible for Covid-19. It emerged from the city of Wuhan (China) in December 2019, and within a few months, the virus propagated itself globally now resulting more than 50 million cases with over 1 million deaths. The high infection rates coupled with dynamic population movement demands for tools, especially within a Brazilian context, that will support health managers to develop policies for controlling and combating the new virus.Methods: In this work, we propose a tool for real-time spatio-temporal analysis using a machine learning approach. The COVID-SGIS system brings together routinely collected health data on Covid-19 distributed across public health systems in Brazil, as well as taking to under consideration the geographic and time-dependent features of Covid-19 so as to make spatio-temporal predictions. The data are sub-divided by federative unit and municipality. In our case study, we made spatio-temporal predictions of the distribution of cases and deaths in Brazil and in each federative unit. Four regression methods were investigated: linear regression, support vector machines (polynomial kernels and RBF), multilayer perceptrons, and random forests. We use the percentage RMSE and the correlation coefficient as quality metrics.Results: For qualitative evaluation, we made spatio-temporal predictions for the period from 25 to 27 May 2020. Considering qualitatively and quantitatively the case of the State of Pernambuco and Brazil as a whole, linear regression presented the best prediction results (thematic maps with good data distribution, correlation coefficient >0.99 and RMSE (%) <4% for Pernambuco and around 5% for Brazil) with low training time: [0.00; 0.04 ms], CI 95%.Conclusion: Spatio-temporal analysis provided a broader assessment ...
    Keywords COVID-19 ; SARS-CoV-2 ; Covid-19 pandemics forecasting ; spatio-temporal analysis ; spatio-temporal forecasting ; digital epidemiology ; Public aspects of medicine ; RA1-1270
    Language English
    Publishing date 2021-04-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: COVID-SGIS

    Clarisse Lins de Lima / Cecilia Cordeiro da Silva / Ana Clara Gomes da Silva / Eduardo Luiz Silva / Gabriel Souza Marques / Lucas Job Brito de Araújo / Luiz Antônio Albuquerque Júnior / Samuel Barbosa Jatobá de Souza / Maíra Araújo de Santana / Juliana Carneiro Gomes / Valter Augusto de Freitas Barbosa / Anwar Musah / Patty Kostkova / Wellington Pinheiro dos Santos / Abel Guilhermino da Silva Filho

    Frontiers in Public Health, Vol

    A Smart Tool for Dynamic Monitoring and Temporal Forecasting of Covid-19

    2020  Volume 8

    Abstract: Background: The global burden of the new coronavirus SARS-CoV-2 is increasing at an unprecedented rate. The current spread of Covid-19 in Brazil is problematic causing a huge public health burden to its population and national health-care service. To ... ...

    Abstract Background: The global burden of the new coronavirus SARS-CoV-2 is increasing at an unprecedented rate. The current spread of Covid-19 in Brazil is problematic causing a huge public health burden to its population and national health-care service. To evaluate strategies for alleviating such problems, it is necessary to forecast the number of cases and deaths in order to aid the stakeholders in the process of making decisions against the disease. We propose a novel system for real-time forecast of the cumulative cases of Covid-19 in Brazil.Methods: We developed the novel COVID-SGIS application for the real-time surveillance, forecast and spatial visualization of Covid-19 for Brazil. This system captures routinely reported Covid-19 information from 27 federative units from the Brazil.io database. It utilizes all Covid-19 confirmed case data that have been notified through the National Notification System, from March to May 2020. Time series ARIMA models were integrated for the forecast of cumulative number of Covid-19 cases and deaths. These include 6-days forecasts as graphical outputs for each federative unit in Brazil, separately, with its corresponding 95% CI for statistical significance. In addition, a worst and best scenarios are presented.Results: The following federative units (out of 27) were flagged by our ARIMA models showing statistically significant increasing temporal patterns of Covid-19 cases during the specified day-to-day period: Bahia, Maranhão, Piauí, Rio Grande do Norte, Amapá, Rondônia, where their day-to-day forecasts were within the 95% CI limits. Equally, the same findings were observed for Espírito Santo, Minas Gerais, Paraná, and Santa Catarina. The overall percentage error between the forecasted values and the actual values varied between 2.56 and 6.50%. For the days when the forecasts fell outside the forecast interval, the percentage errors in relation to the worst case scenario were below 5%.Conclusion: The proposed method for dynamic forecasting may be used to guide social policies ...
    Keywords SARS-CoV-2 spread forecast ; intelligent forecasting systems ; infectious diseases ; dynamic forecasting systems ; Covid-19 forecasting ; Public aspects of medicine ; RA1-1270
    Language English
    Publishing date 2020-11-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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