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  1. Article ; Online: Developing indicators to detect the use of fish-aggregating devices

    Widodo, Agustinus Anung / Wilcox, Chris / Sadiyah, Lilis / Satria, Fayakun / Wudianto / Ford, Jessica / Hardesty, Britta Denise

    Marine and Freshwater Research. 2023, v. 74, no. 6 p.535-543

    2023  

    Abstract: Context The growing demand for global food security has resulted in rising fishing intensity, sometimes leading to overexploitation of fish resources, including tuna. Increasingly, fishers are using anchored fish aggregating devices (aFADs) to improve ... ...

    Abstract Context The growing demand for global food security has resulted in rising fishing intensity, sometimes leading to overexploitation of fish resources, including tuna. Increasingly, fishers are using anchored fish aggregating devices (aFADs) to improve efficiencies and reduce costs. Aims To identify locations and use patterns of FADs and characterise aFAD usage in Indonesia and beyond. Methods We identified general patterns of aFAD usage by tuna purse-seine, pole and line, hand-line and troll-line vessels operating in Indonesian waters through reviewing relevant literature and focal-group discussions. Key results aFADs usage can be characterised by gear type and fishing strategy; vessel behaviour; equipment and spare parts for aFADs installation; association with light; trip duration, catch per unit effort (CPUE), ratio of live bait to catch, fuel consumption; existence of aFAD floats on board vessels and by-catch composition. Conclusions aFAD usage has been widely adopted by both industrial and small-scale tuna fishers to efficiency. However, this efficiency comes at the cost of significant increases in catches of juveniles and non-target species, which raises sustainability concerns for Indonesian officials. Implications Ultimately, quantifying the numbers, types and locations of aFADs is key to fisheries management to avoid overfishing, overcrowding and limit by-catch and fishing-associated waste.
    Keywords bycatch ; energy use and consumption ; equipment ; food security ; freshwater ; nontarget organisms ; research ; tuna ; wastes ; Indonesia ; aFAD ; anchored fish-aggregating device ; fisheries management ; hand-line ; pole and line ; purse seine ; sustainable fisheries ; troll line
    Language English
    Size p. 535-543.
    Publishing place CSIRO Publishing
    Document type Article ; Online
    ZDB-ID 1283028-8
    ISSN 1323-1650
    ISSN 1323-1650
    DOI 10.1071/MF22055
    Database NAL-Catalogue (AGRICOLA)

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  2. Article: Antiviral screening on

    Zubair, Muhammad Sulaiman / Khairunisa, Siti Qamariyah / Widodo, Agustinus / Nasronudin / Pitopang, Ramadanil

    Heliyon

    2021  Volume 7, Issue 4, Page(s) e06710

    Abstract: ... Alpinia ... ...

    Abstract Alpinia eremochlamys
    Language English
    Publishing date 2021-04-08
    Publishing country England
    Document type Journal Article
    ZDB-ID 2835763-2
    ISSN 2405-8440
    ISSN 2405-8440
    DOI 10.1016/j.heliyon.2021.e06710
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Antioxidant and antiviral potency of

    Zubair, Muhammad Sulaiman / Khairunisa, Siti Qamariyah / Sulastri, Evi / Ihwan / Widodo, Agustinus / Nasronudin / Pitopang, Ramadanil

    Journal of basic and clinical physiology and pharmacology

    2021  Volume 32, Issue 4, Page(s) 845–851

    Abstract: Objectives: This study aims to evaluate the antioxidant and antiviral potency of : Methods: Assays for antioxidant and antiviral activity (HIV-1) were carried out on MT-4 cells infected with HIV using the DPPH method and the determination of the ... ...

    Abstract Objectives: This study aims to evaluate the antioxidant and antiviral potency of
    Methods: Assays for antioxidant and antiviral activity (HIV-1) were carried out on MT-4 cells infected with HIV using the DPPH method and the determination of the cytopathic effect. Meanwhile, GC-MS was used to identify the chemical compounds.
    Results: The determination of antioxidants showed that all fractions possessed potent activity with the IC
    Conclusions: Therefore, this study supports the application of
    Language English
    Publishing date 2021-06-25
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1071737-7
    ISSN 2191-0286 ; 0792-6855 ; 0334-1534
    ISSN (online) 2191-0286
    ISSN 0792-6855 ; 0334-1534
    DOI 10.1515/jbcpp-2020-0476
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: GC-MS, LC-MS/MS, Docking and Molecular Dynamics Approaches to Identify Potential SARS-CoV-2 3-Chymotrypsin-Like Protease Inhibitors from

    Zubair, Muhammad Sulaiman / Maulana, Saipul / Widodo, Agustinus / Pitopang, Ramadanil / Arba, Muhammad / Hariono, Maywan

    Molecules (Basel, Switzerland)

    2021  Volume 26, Issue 17

    Abstract: This study aims to identify and isolate the secondary metabolites ... ...

    Abstract This study aims to identify and isolate the secondary metabolites of
    MeSH term(s) Coronavirus 3C Proteases/antagonists & inhibitors ; Coronavirus 3C Proteases/metabolism ; Coronavirus 3C Proteases/ultrastructure ; Coronavirus Protease Inhibitors/chemistry ; Coronavirus Protease Inhibitors/isolation & purification ; Coronavirus Protease Inhibitors/pharmacology ; Coronavirus Protease Inhibitors/therapeutic use ; Crystallography, X-Ray ; Enzyme Assays ; Gas Chromatography-Mass Spectrometry ; Zingiber officinale/chemistry ; Humans ; Magnetic Resonance Spectroscopy ; Molecular Docking Simulation ; Molecular Dynamics Simulation ; Plant Extracts/chemistry ; Plant Extracts/isolation & purification ; Plant Extracts/pharmacology ; Plant Extracts/therapeutic use ; Pyrrolidines/pharmacology ; SARS-CoV-2/drug effects ; SARS-CoV-2/enzymology ; Structure-Activity Relationship ; Sulfonic Acids/pharmacology ; COVID-19 Drug Treatment
    Chemical Substances Coronavirus Protease Inhibitors ; Plant Extracts ; Pyrrolidines ; Sulfonic Acids ; 3C-like proteinase, SARS-CoV-2 (EC 3.4.22.-) ; Coronavirus 3C Proteases (EC 3.4.22.28) ; GC376 (H1NMJ5XDG5)
    Language English
    Publishing date 2021-08-28
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 1413402-0
    ISSN 1420-3049 ; 1431-5165 ; 1420-3049
    ISSN (online) 1420-3049
    ISSN 1431-5165 ; 1420-3049
    DOI 10.3390/molecules26175230
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: ANTIVIRAL ACTIVITY OF

    Widodo, Agustinus / Widiyanti, Prihartini / Prajogo, Bambang

    African journal of infectious diseases

    2018  Volume 12, Issue 1 Suppl, Page(s) 36–43

    Abstract: Backgrounds: Justicia gendarussa: Materials and methods: In the activity test, the effect of incubation time on the antiviral activity of : Results: The incubation time influences the CC: Conclusion: Fractionated-70% ethanol extract ... ...

    Abstract Backgrounds: Justicia gendarussa
    Materials and methods: In the activity test, the effect of incubation time on the antiviral activity of
    Results: The incubation time influences the CC
    Conclusion: Fractionated-70% ethanol extract of
    Language English
    Publishing date 2018-03-07
    Publishing country Nigeria
    Document type Journal Article
    ISSN 2006-0165
    ISSN 2006-0165
    DOI 10.2101/Ajid.12v1S.4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: EFFECT OF VARYING INCUBATION PERIODS ON CYTOTOXICITY AND VIRUCIDAL ACTIVITIES OF

    Widiyanti, Prihartini / Prajogo, Bambang / Widodo, Agustinus

    African journal of infectious diseases

    2018  Volume 12, Issue 1 Suppl, Page(s) 133–139

    Abstract: Backgrounds: Justicia gendarussa: Materials and methods: The cytotoxicity assay was evaluated by using the WST-1 test with incubation periods of 3 days and 5 days. The virucidal activity test was determined by measuring the inhibitory activities on ... ...

    Abstract Backgrounds: Justicia gendarussa
    Materials and methods: The cytotoxicity assay was evaluated by using the WST-1 test with incubation periods of 3 days and 5 days. The virucidal activity test was determined by measuring the inhibitory activities on the syncytium formation.
    Results: The cytotoxicity assay showed the value of CC
    Conclusion: 70% ethanol extract, fractionated-70% ethanol extract, and water extract of
    Language English
    Publishing date 2018-03-07
    Publishing country Nigeria
    Document type Journal Article
    ISSN 2006-0165
    ISSN 2006-0165
    DOI 10.2101/Ajid.12v1S.20
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Comparison of handline tuna catches in Indian Ocean and Banda Sea waters

    Tri Hargiyatno Ignatius / Fiji Anggawangsa Regi / Natsir Moh. / Gede Bayu Sedana I. / Anung Widodo Agustinus / Wudianto

    E3S Web of Conferences, Vol 322, p

    2021  Volume 03004

    Abstract: There are two essential landing sites for handline tuna in Indonesia: Palabuhanratu (in the Indian Ocean) and Kendari (in the Banda Sea). This paper analyzes handline catches from the Indian Ocean and Banda Sea waters as the main fishing ground. The ... ...

    Abstract There are two essential landing sites for handline tuna in Indonesia: Palabuhanratu (in the Indian Ocean) and Kendari (in the Banda Sea). This paper analyzes handline catches from the Indian Ocean and Banda Sea waters as the main fishing ground. The catch composition of the handline tuna landed in Kendari is more varied than Palabuhanratu. Several species commonly caught are yellowfin tuna (Thunnus albacares), skipjack tuna (Katsuwonus pelamis), bigeye tuna (Thunnus obesus) as a target species, and some billfish species as bycatch. Mean CPUE for handline tuna landed in Palabuhanratu is lower than Kendari. A significant difference is based on the monthly mean CPUE variation between Palabuhanratu and Kendari landing sites (p < 0.001). Handline catches in Palabuhanratu had a more comprehensive range of length sizes than Kendari, using a two-sample K-S test showed significant differences (p < 0.001). The fish size landed in Kendari is relatively smaller than Palabuhanratu. The average length of fish caught by handline is smaller than the length at first maturity (Lm) value in both landing sites. The use of large size hook for hand lines is recommended for catching tunas in this area.
    Keywords Environmental sciences ; GE1-350
    Subject code 551
    Language English
    Publishing date 2021-01-01T00:00:00Z
    Publisher EDP Sciences
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Vulnerability level of target and by-catch species on tuna hand line (HL-TR) fishery in Indonesian Fisheries Management Area I-FMA 573 based at Sadeng Fishing Port

    Anggawangsa Regi Fiji / Widodo Agustinus Anung / Wudianto / Tri Hargiyatno Ignatius / Sadiyah Lilis / Mahiswara / Satria Fayakun

    E3S Web of Conferences, Vol 322, p

    2021  Volume 03001

    Abstract: Tuna hand line-trolling line (HL-TR) fisheries have an essential role in Indonesia’s tuna fisheries, including Indonesia Fisheries Management Areas (I-FMAs) 572 and 573. The catch of tuna line in I-FMA 572 and 573 reached ~30.4% of the total catch 189, ... ...

    Abstract Tuna hand line-trolling line (HL-TR) fisheries have an essential role in Indonesia’s tuna fisheries, including Indonesia Fisheries Management Areas (I-FMAs) 572 and 573. The catch of tuna line in I-FMA 572 and 573 reached ~30.4% of the total catch 189,022 tonnes in 2019. Limited data and scientific advice for developing adequate management remain a challenge for tuna HL-TR fisheries in I-FMA 573 waters. Center for Fisheries Research (CFR) has conducted an assessment using the PSA method to obtain information of vulnerability level both of target and bycatch species on tuna HL-TR in 2020. Data used in the analysis were grouped into operational fishing, productivity, and susceptibility data. The operational fishing data were obtained from Sadeng Fishing Port in2019. The productivity and susceptibility data were obtained from literature review and expert consultation through a Focus Group Discussion (FGD) and expert consultative workshop. The result showed that both target and by-catch species included in the analysis have low to moderate vulnerability level scores. The results of this research are used to help managers at a national level to determine necessary management measures with high precautionary. While for by-catch species, in particular white tip sharks, its management measures must comply with agreed IOTC regulations.
    Keywords Environmental sciences ; GE1-350
    Subject code 333
    Language English
    Publishing date 2021-01-01T00:00:00Z
    Publisher EDP Sciences
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article: Docking Study on Anti-HIV-1 Activity of Secondary Metabolites from Zingiberaceae Plants.

    Zubair, Muhammad Sulaiman / Maulana, Saipul / Widodo, Agustinus / Mukaddas, Alwiyah / Pitopang, Ramadanil

    Journal of pharmacy & bioallied sciences

    2020  Volume 12, Issue Suppl 2, Page(s) S763–S767

    Abstract: Introduction: Human immunodeficiency virus type-1 (HIV-1) that causes acquired immunodeficiency syndrome (AIDS) has become a worldwide health problem today. There are approximately 30 anti-HIV-1 drugs that have been used in the treatment of AIDS. ... ...

    Abstract Introduction: Human immunodeficiency virus type-1 (HIV-1) that causes acquired immunodeficiency syndrome (AIDS) has become a worldwide health problem today. There are approximately 30 anti-HIV-1 drugs that have been used in the treatment of AIDS. However, effective anti HIV-1 agents with less side affect and high inhibition potency are still in demand.
    Objective: The objective of this study was to identify the potential compounds from Zingiberaceae plants that might be active as anti-HIV-1 by molecular docking.
    Materials and methods: Molecular docking simulation was performed by using AutoDock 4.2 on Linux operation system. Docking protocol was validated by using root mean square deviation (RMSD) value using redocking and cross-docking methods. The reported metabolites from Zingiberaceae plants were docked on HIV-1 protease, integrase, and reverse transcriptase protein enzymes.
    Results: The docking result showed that the genera of
    Conclusion: The docking molecular study has identified the possible potential compounds from Zingiberaceae plants that might be used for anti-HIV-1 treatment. So, this study suggested further isolation and purification of the predicted compounds.
    Language English
    Publishing date 2020-11-05
    Publishing country India
    Document type Journal Article
    ZDB-ID 2573569-X
    ISSN 0975-7406 ; 0976-4879
    ISSN (online) 0975-7406
    ISSN 0976-4879
    DOI 10.4103/jpbs.JPBS_261_19
    Database MEDical Literature Analysis and Retrieval System OnLINE

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