Article ; Online: Passenger Gene Coamplifications Create Collateral Therapeutic Vulnerabilities in Cancer.
2024 Volume 14, Issue 3, Page(s) 492–507
Abstract: DNA amplifications in cancer do not only harbor oncogenes. We sought to determine whether passenger coamplifications could create collateral therapeutic vulnerabilities. Through an analysis of >3,000 cancer genomes followed by the interrogation of CRISPR- ...
Abstract | DNA amplifications in cancer do not only harbor oncogenes. We sought to determine whether passenger coamplifications could create collateral therapeutic vulnerabilities. Through an analysis of >3,000 cancer genomes followed by the interrogation of CRISPR-Cas9 loss-of-function screens across >700 cancer cell lines, we determined that passenger coamplifications are accompanied by distinct dependency profiles. In a proof-of-principle study, we demonstrate that the coamplification of the bona fide passenger gene DEAD-Box Helicase 1 (DDX1) creates an increased dependency on the mTOR pathway. Interaction proteomics identified tricarboxylic acid (TCA) cycle components as previously unrecognized DDX1 interaction partners. Live-cell metabolomics highlighted that this interaction could impair TCA activity, which in turn resulted in enhanced mTORC1 activity. Consequently, genetic and pharmacologic disruption of mTORC1 resulted in pronounced cell death in vitro and in vivo. Thus, structurally linked coamplification of a passenger gene and an oncogene can result in collateral vulnerabilities. Significance: We demonstrate that coamplification of passenger genes, which were largely neglected in cancer biology in the past, can create distinct cancer dependencies. Because passenger coamplifications are frequent in cancer, this principle has the potential to expand target discovery in oncology. This article is featured in Selected Articles from This Issue, p. 384. |
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MeSH term(s) | Humans ; Oncogenes ; Neoplasms/genetics ; Medical Oncology ; Cell Death ; Mechanistic Target of Rapamycin Complex 1/genetics |
Chemical Substances | Mechanistic Target of Rapamycin Complex 1 (EC 2.7.11.1) |
Language | English |
Publishing date | 2024-01-10 |
Publishing country | United States |
Document type | Journal Article |
ZDB-ID | 2625242-9 |
ISSN | 2159-8290 ; 2159-8274 |
ISSN (online) | 2159-8290 |
ISSN | 2159-8274 |
DOI | 10.1158/2159-8290.CD-23-1189 |
Database | MEDical Literature Analysis and Retrieval System OnLINE |
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