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  1. Article: Deletion of Gas2l3 in mice leads to specific defects in cardiomyocyte cytokinesis during development

    Wolf, Elmar / von Eyss, Bjoern

    Proceedings of the National Academy of Sciences of the United States of America, 114(30):8029-8034

    2017  

    Abstract: GAS2L3 is a recently identified cytoskeleton-associated protein that interacts with actin filaments and tubulin. The in vivo function of GAS2L3 in mammals remains unknown. Here, we show that mice deficient in GAS2L3 die shortly after birth because of ... ...

    Institution Leibniz-Institut für Alternsforschung
    Abstract GAS2L3 is a recently identified cytoskeleton-associated protein that interacts with actin filaments and tubulin. The in vivo function of GAS2L3 in mammals remains unknown. Here, we show that mice deficient in GAS2L3 die shortly after birth because of heart failure. Mammalian cardiomyocytes lose the ability to proliferate shortly after birth, and further increase in cardiac mass is achieved by hypertrophy. The proliferation arrest of cardiomyocytes is accompanied by binucleation through incomplete cytokinesis. We observed that GAS2L3 deficiency leads to inhibition of cardiomyocyte proliferation and to cardiomyocyte hypertrophy during embryonic development. Cardiomyocyte-specific deletion of GAS2L3 confirmed that the phenotype results from the loss of GAS2L3 in cardiomyocytes. Cardiomyocytes from Gas2l3-deficient mice exhibit increased expression of a p53-transcriptional program including the cell cycle inhibitor p21. Furthermore, loss of GAS2L3 results in premature binucleation of cardiomyocytes accompanied by unresolved midbody structures. Together these results suggest that GAS2L3 plays a specific role in cardiomyocyte cytokinesis and proliferation during heart development.
    Keywords GAS2L3 ; cardiomyocytes ; cytokinesis ; binucleation
    Language English
    Document type Article
    Database Repository for Life Sciences

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  2. Book ; Online ; Thesis: Molecular Mechanisms of MYC’s impact on Transcription Elongation

    Baluapuri, Apoorva [Verfasser] / Wolf, Elmar [Gutachter]

    2021  

    Author's details Apoorva Baluapuri ; Gutachter: Elmar Wolf
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universität Würzburg
    Publishing place Würzburg
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  3. Article ; Online: Generation of auxin inducible degron (AID) knock-in cell lines for targeted protein degradation in mammalian cells.

    Adhikari, Bikash / Narain, Ashwin / Wolf, Elmar

    STAR protocols

    2021  Volume 2, Issue 4, Page(s) 100949

    Abstract: Targeted protein degradation using degrons, such as the mini-Auxin-inducible degron (mAID), has an advantage over genetic silencing/knockout. However, the efficiency of sgRNA, homologous recombination, tedious expansion, and screening single clones makes ...

    Abstract Targeted protein degradation using degrons, such as the mini-Auxin-inducible degron (mAID), has an advantage over genetic silencing/knockout. However, the efficiency of sgRNA, homologous recombination, tedious expansion, and screening single clones makes the process of tagging endogenous proteins long and laborious. This protocol describes a practical and economical way to obtain AID-tagged endogenous proteins using CRISPR/Cas9-mediated homology-directed repair (HDR). We use the generation of endogenously AID-tagged SPT6 in U2OS cells as an example but provide sufficient details for usage in other cell types. For complete details on the use and execution of this protocol, please refer to Narain et al. (2021).
    MeSH term(s) Animals ; CRISPR-Cas Systems/genetics ; Cell Line, Tumor ; Cloning, Molecular/methods ; Gene Knock-In Techniques/methods ; Humans ; Plant Proteins/genetics ; Proteolysis ; RNA, Guide, CRISPR-Cas Systems/genetics ; Transfection
    Chemical Substances Plant Proteins ; RNA, Guide, CRISPR-Cas Systems
    Language English
    Publishing date 2021-11-19
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 2666-1667
    ISSN (online) 2666-1667
    DOI 10.1016/j.xpro.2021.100949
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Target gene-independent functions of MYC oncoproteins.

    Baluapuri, Apoorva / Wolf, Elmar / Eilers, Martin

    Nature reviews. Molecular cell biology

    2020  Volume 21, Issue 5, Page(s) 255–267

    Abstract: Oncoproteins of the MYC family are major drivers of human tumorigenesis. Since a large body of evidence indicates that MYC proteins are transcription factors, studying their function has focused on the biology of their target genes. Detailed studies of ... ...

    Abstract Oncoproteins of the MYC family are major drivers of human tumorigenesis. Since a large body of evidence indicates that MYC proteins are transcription factors, studying their function has focused on the biology of their target genes. Detailed studies of MYC-dependent changes in RNA levels have provided contrasting models of the oncogenic activity of MYC proteins through either enhancing or repressing the expression of specific target genes, or as global amplifiers of transcription. In this Review, we first summarize the biochemistry of MYC proteins and what is known (or is unclear) about the MYC target genes. We then discuss recent progress in defining the interactomes of MYC and MYCN and how this information affects central concepts of MYC biology, focusing on mechanisms by which MYC proteins modulate transcription. MYC proteins promote transcription termination upon stalling of RNA polymerase II, and we propose that this mechanism enhances the stress resilience of basal transcription. Furthermore, MYC proteins coordinate transcription elongation with DNA replication and cell cycle progression. Finally, we argue that the mechanism by which MYC proteins regulate the transcription machinery is likely to promote tumorigenesis independently of global or relative changes in the expression of their target genes.
    MeSH term(s) Carcinogenesis/genetics ; Cell Cycle/genetics ; Cell Proliferation/genetics ; DNA Replication/genetics ; Humans ; N-Myc Proto-Oncogene Protein/genetics ; Neoplasms/genetics ; Oncogene Proteins/genetics ; Proto-Oncogene Proteins c-myc/genetics ; Transcription Factors ; Transcription, Genetic
    Chemical Substances MYC protein, human ; MYCN protein, human ; N-Myc Proto-Oncogene Protein ; Oncogene Proteins ; Proto-Oncogene Proteins c-myc ; Transcription Factors
    Language English
    Publishing date 2020-02-18
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2031313-5
    ISSN 1471-0080 ; 1471-0072
    ISSN (online) 1471-0080
    ISSN 1471-0072
    DOI 10.1038/s41580-020-0215-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Spt5 interacts genetically with Myc and is limiting for brain tumor growth in

    Hofstetter, Julia / Ogunleye, Ayoola / Kutschke, André / Buchholz, Lisa Marie / Wolf, Elmar / Raabe, Thomas / Gallant, Peter

    Life science alliance

    2023  Volume 7, Issue 1

    Abstract: The transcription factor SPT5 physically interacts with MYC oncoproteins and is essential for efficient transcriptional activation of MYC targets in cultured cells. Here, we ... ...

    Abstract The transcription factor SPT5 physically interacts with MYC oncoproteins and is essential for efficient transcriptional activation of MYC targets in cultured cells. Here, we use
    MeSH term(s) Animals ; Humans ; Brain/metabolism ; Brain Neoplasms/genetics ; Drosophila/genetics ; Drosophila/metabolism ; Nuclear Proteins/genetics ; Nuclear Proteins/metabolism ; Transcriptional Elongation Factors/metabolism
    Chemical Substances Nuclear Proteins ; Transcriptional Elongation Factors ; SPT5 transcriptional elongation factor (138673-72-0) ; Myc protein, Drosophila
    Language English
    Publishing date 2023-11-07
    Publishing country United States
    Document type Journal Article
    ISSN 2575-1077
    ISSN (online) 2575-1077
    DOI 10.26508/lsa.202302130
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Book ; Online ; Thesis: Changes in chromatin accessibility by oncogenic YAP and its relevance for regulation of cell cycle gene expression and cell migration

    Fetiva Mora, Maria Camila [Verfasser] / Gaubatz, Stefan [Gutachter] / Meierjorhann, Svenja [Gutachter] / Wolf, Elmar [Gutachter]

    2023  

    Author's details Maria Camila Fetiva Mora ; Gutachter: Stefan Gaubatz, Svenja Meierjorhann, Elmar Wolf
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universität Würzburg
    Publishing place Würzburg
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  7. Book ; Online ; Thesis: Genome-wide reporter screens identify transcriptional regulators of ribosome biogenesis

    Schwarz, Jessica Denise [Verfasser] / Wolf, Elmar [Gutachter] / Eilers, Martin [Gutachter] / von Eyß, Björn [Gutachter] / Winterpacht, Andreas [Gutachter]

    2023  

    Author's details Jessica Denise Schwarz ; Gutachter: Elmar Wolf, Martin Eilers, Björn von Eyß, Andreas Winterpacht
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universität Würzburg
    Publishing place Würzburg
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  8. Article ; Online: Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data.

    Berg, Kevin / Lodha, Manivel / Delazer, Isabel / Bartosik, Karolina / Garcia, Yilliam Cruz / Hennig, Thomas / Wolf, Elmar / Dölken, Lars / Lusser, Alexandra / Prusty, Bhupesh K / Erhard, Florian

    Nucleic acids research

    2024  Volume 52, Issue 7, Page(s) e35

    Abstract: Nucleoside analogues like 4-thiouridine (4sU) are used to metabolically label newly synthesized RNA. Chemical conversion of 4sU before sequencing induces T-to-C mismatches in reads sequenced from labelled RNA, allowing to obtain total and labelled RNA ... ...

    Abstract Nucleoside analogues like 4-thiouridine (4sU) are used to metabolically label newly synthesized RNA. Chemical conversion of 4sU before sequencing induces T-to-C mismatches in reads sequenced from labelled RNA, allowing to obtain total and labelled RNA expression profiles from a single sequencing library. Cytotoxicity due to extended periods of labelling or high 4sU concentrations has been described, but the effects of extensive 4sU labelling on expression estimates from nucleotide conversion RNA-seq have not been studied. Here, we performed nucleotide conversion RNA-seq with escalating doses of 4sU with short-term labelling (1h) and over a progressive time course (up to 2h) in different cell lines. With high concentrations or at later time points, expression estimates were biased in an RNA half-life dependent manner. We show that bias arose by a combination of reduced mappability of reads carrying multiple conversions, and a global, unspecific underrepresentation of labelled RNA emerging during library preparation and potentially global reduction of RNA synthesis. We developed a computational tool to rescue unmappable reads, which performed favourably compared to previous read mappers, and a statistical method, which could fully remove remaining bias. All methods developed here are freely available as part of our GRAND-SLAM pipeline and grandR package.
    MeSH term(s) Thiouridine/metabolism ; Thiouridine/chemistry ; RNA-Seq/methods ; Humans ; RNA/genetics ; Sequence Analysis, RNA/methods ; Nucleotides/genetics
    Chemical Substances Thiouridine (13957-31-8) ; RNA (63231-63-0) ; Nucleotides
    Language English
    Publishing date 2024-02-21
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 186809-3
    ISSN 1362-4962 ; 1362-4954 ; 0301-5610 ; 0305-1048
    ISSN (online) 1362-4962 ; 1362-4954
    ISSN 0301-5610 ; 0305-1048
    DOI 10.1093/nar/gkae120
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: The glycolytic enzyme ALDOA and the exon junction complex protein RBM8A are regulators of ribosomal biogenesis.

    Schwarz, Jessica Denise / Lukassen, Sören / Bhandare, Pranjali / Eing, Lorenz / Snaebjörnsson, Marteinn Thor / García, Yiliam Cruz / Kisker, Jan Philipp / Schulze, Almut / Wolf, Elmar

    Frontiers in cell and developmental biology

    2022  Volume 10, Page(s) 954358

    Abstract: Cellular growth is a fundamental process of life and must be precisely controlled in multicellular organisms. Growth is crucially controlled by the number of functional ribosomes available in cells. The production of new ribosomes depends critically on ... ...

    Abstract Cellular growth is a fundamental process of life and must be precisely controlled in multicellular organisms. Growth is crucially controlled by the number of functional ribosomes available in cells. The production of new ribosomes depends critically on the activity of RNA polymerase (RNAP) II in addition to the activity of RNAP I and III, which produce ribosomal RNAs. Indeed, the expression of both, ribosomal proteins and proteins required for ribosome assembly (ribosomal biogenesis factors), is considered rate-limiting for ribosome synthesis. Here, we used genetic screening to identify novel transcriptional regulators of cell growth genes by fusing promoters from a ribosomal protein gene (
    Language English
    Publishing date 2022-09-14
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2737824-X
    ISSN 2296-634X
    ISSN 2296-634X
    DOI 10.3389/fcell.2022.954358
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Book ; Online ; Thesis: MYC shapes the composition of RNA polymerase II through direct recruitment of transcription elongation factors

    Hofstetter, Julia Eva Ines [Verfasser] / Wolf, Elmar [Gutachter] / Eilers, Martin [Gutachter] / Fischer, Utz [Gutachter] / Schlosser, Andreas [Gutachter]

    2022  

    Author's details Julia Eva Ines Hofstetter ; Gutachter: Elmar Wolf, Martin Eilers, Utz Fischer, Andreas Schlosser
    Keywords Biowissenschaften, Biologie ; Life Science, Biology
    Subject code sg570
    Language English
    Publisher Universität Würzburg
    Publishing place Würzburg
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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