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  1. Article ; Online: Native SEC and Reversed-Phase LC-MS Reveal Impact of Fab Glycosylation of Anti-SARS-COV-2 Antibodies on Binding to the Receptor Binding Domain.

    Woodall, Daniel W / Thomson, Christy A / Dillon, Thomas M / McAuley, Arnold / Green, Lydia B / Foltz, Ian N / Bondarenko, Pavel V

    Analytical chemistry

    2023  Volume 95, Issue 42, Page(s) 15477–15485

    Abstract: The binding affinity of monoclonal antibodies (mAbs) for their intended therapeutic targets is often affected by chemical and post-translational modifications in the antigen binding (Fab) domains. A new two-dimensional analytical approach is described ... ...

    Abstract The binding affinity of monoclonal antibodies (mAbs) for their intended therapeutic targets is often affected by chemical and post-translational modifications in the antigen binding (Fab) domains. A new two-dimensional analytical approach is described here utilizing native size exclusion chromatography (SEC) to separate populations of antibodies and bound antibody-antigen complexes for subsequent characterization of these modifications by reversed-phase (RP) liquid chromatography-mass spectrometry (LC-MS) at the intact antibody level. Previously, we utilized peptide mapping to measure modifications impacting binding. However, in this study, the large size of the modification (N-glycosylation) allowed assessing its impact from small amounts (∼20 ug) of intact antibody, without the need for peptide mapping. Here, we apply the native SEC-based competitive binding assay to quickly and qualitatively investigate the effects of Fab glycosylation of four antispike protein mAbs that were developed for use in the treatment of COVID-19 disease. Three of the mAbs were observed to have consensus N-glycosylation sites (N-X-T/S) in the Fab domains, a relatively rare occurrence in therapeutic mAbs. The goal of the study was to characterize the levels of Fab glycosylation present, as well as determine the impact of glycosylation on binding to the spike protein receptor binding domain (RBD) and the ability of the mAbs to inhibit RBD-ACE2 interaction at the intact antibody level, with minimal sample treatment and preparation. The three mAbs with Fab N-glycans were found to have glycosylation profiles ranging from full occupancy at each Fab (in one mAb) to partially glycosylated with mixed populations of two, one, or no glycan moieties. Competitive SEC analysis of mAb-RBD revealed that the glycosylated antibody populations outcompete their nonglycosylated counterparts for the available RBD molecules. This competitive SEC binding analysis was applied to investigate the three-body interaction of a glycosylated mAb blocking the interaction between endogenous binding partners RBD-ACE2, finding that both glycosylated and nonglycosylated mAb populations bound to RBD with high enough affinity to block RBD-ACE2 binding.
    MeSH term(s) Humans ; Glycosylation ; COVID-19 ; Chromatography, Liquid ; Angiotensin-Converting Enzyme 2/metabolism ; Tandem Mass Spectrometry ; Antibodies, Viral ; Protein Binding ; Chromatography, Gel
    Chemical Substances Angiotensin-Converting Enzyme 2 (EC 3.4.17.23) ; Antibodies, Viral
    Language English
    Publishing date 2023-10-09
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1508-8
    ISSN 1520-6882 ; 0003-2700
    ISSN (online) 1520-6882
    ISSN 0003-2700
    DOI 10.1021/acs.analchem.2c05554
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Native SEC and Reversed-Phase LC–MS Reveal Impact of Fab Glycosylation of Anti-SARS-COV‑2 Antibodies on Binding to the Receptor Binding Domain

    Woodall, Daniel W. / Thomson, Christy A. / Dillon, T. M. / McAuley, Arnold / Green, Lydia B. / Foltz, Ian N. / Bondarenko, Pavel V.

    Analytical Chemistry. 2023 Oct. 09, v. 95, no. 42 p.15477-15485

    2023  

    Abstract: The binding affinity of monoclonal antibodies (mAbs) for their intended therapeutic targets is often affected by chemical and post-translational modifications in the antigen binding (Fab) domains. A new two-dimensional analytical approach is described ... ...

    Abstract The binding affinity of monoclonal antibodies (mAbs) for their intended therapeutic targets is often affected by chemical and post-translational modifications in the antigen binding (Fab) domains. A new two-dimensional analytical approach is described here utilizing native size exclusion chromatography (SEC) to separate populations of antibodies and bound antibody–antigen complexes for subsequent characterization of these modifications by reversed-phase (RP) liquid chromatography–mass spectrometry (LC–MS) at the intact antibody level. Previously, we utilized peptide mapping to measure modifications impacting binding. However, in this study, the large size of the modification (N-glycosylation) allowed assessing its impact from small amounts (∼20 ug) of intact antibody, without the need for peptide mapping. Here, we apply the native SEC-based competitive binding assay to quickly and qualitatively investigate the effects of Fab glycosylation of four antispike protein mAbs that were developed for use in the treatment of COVID-19 disease. Three of the mAbs were observed to have consensus N-glycosylation sites (N-X-T/S) in the Fab domains, a relatively rare occurrence in therapeutic mAbs. The goal of the study was to characterize the levels of Fab glycosylation present, as well as determine the impact of glycosylation on binding to the spike protein receptor binding domain (RBD) and the ability of the mAbs to inhibit RBD-ACE2 interaction at the intact antibody level, with minimal sample treatment and preparation. The three mAbs with Fab N-glycans were found to have glycosylation profiles ranging from full occupancy at each Fab (in one mAb) to partially glycosylated with mixed populations of two, one, or no glycan moieties. Competitive SEC analysis of mAb-RBD revealed that the glycosylated antibody populations outcompete their nonglycosylated counterparts for the available RBD molecules. This competitive SEC binding analysis was applied to investigate the three-body interaction of a glycosylated mAb blocking the interaction between endogenous binding partners RBD-ACE2, finding that both glycosylated and nonglycosylated mAb populations bound to RBD with high enough affinity to block RBD-ACE2 binding.
    Keywords COVID-19 infection ; analytical chemistry ; antibodies ; antigens ; gel chromatography ; glycosylation ; mass spectrometry ; peptides ; therapeutics
    Language English
    Dates of publication 2023-1009
    Size p. 15477-15485.
    Publishing place American Chemical Society
    Document type Article ; Online
    ZDB-ID 1508-8
    ISSN 1520-6882 ; 0003-2700
    ISSN (online) 1520-6882
    ISSN 0003-2700
    DOI 10.1021/acs.analchem.2c05554
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  3. Article ; Online: Non-targeted characterization of attributes affecting antibody-FcγRIIIa V158 (CD16a) binding via online affinity chromatography-mass spectrometry.

    Woodall, Daniel W / Dillon, Thomas M / Kalenian, Kevin / Padaki, Rupa / Kuhns, Scott / Semin, David J / Bondarenko, Pavel V

    mAbs

    2022  Volume 14, Issue 1, Page(s) 2004982

    Abstract: Antibodies facilitate targeted cell killing by engaging with immune cells such as natural killer cells through weak binding interactions with Fcγ receptors on the cell surface. Here, we evaluate the binding affinity of the receptor FcγRIIIa V158 (CD16a) ... ...

    Abstract Antibodies facilitate targeted cell killing by engaging with immune cells such as natural killer cells through weak binding interactions with Fcγ receptors on the cell surface. Here, we evaluate the binding affinity of the receptor FcγRIIIa V158 (CD16a) for several therapeutic antibody classes, isoforms, and Fc-fusion proteins using an immobilized receptor affinity liquid chromatography (LC) approach coupled with online mass spectrometry (MS) detection. Aglycosylated FcγRIIIa was used in the affinity chromatography and compared with published affinities using glycosylated receptors. Affinity LC-MS differentiated the IgG1 antibodies primarily according to their Fc glycosylation patterns, with highly galactosylated species having greater affinity for the immobilized receptors and thus eluting later from the column (M5< G0F < G0 afucosylated ≅ G1F < G2F). Sialylated species bound weaker to their asialylated counterparts as reported previously. High mannose glycoforms bound weaker than G0F, contrary to previously published studies using glycosylated receptors. Also, increased receptor binding affinity associated with afucosylated antibodies was not observed with the aglycosylated FcγRIIIa. This apparent difference from previous findings highlighted the importance of the glycans on the receptors for mediating stronger binding interactions. Characterization of temperature-stressed samples by LC-MS peptide mapping revealed over 200 chemical and post-translational modifications, but only the Fc glycans, deamidation of EU N325, and an unknown modification to either proline or cysteine residues of the hinge region were found to have a statistically significant impact on binding.
    MeSH term(s) Animals ; CHO Cells ; Chromatography, Affinity ; Cricetulus ; Humans ; Immunoglobulin Fc Fragments/chemistry ; Immunoglobulin Fc Fragments/genetics ; Immunoglobulin Fc Fragments/immunology ; Mass Spectrometry ; Receptors, IgG/chemistry ; Receptors, IgG/genetics ; Receptors, IgG/immunology ; Recombinant Fusion Proteins/chemistry ; Recombinant Fusion Proteins/genetics ; Recombinant Fusion Proteins/immunology
    Chemical Substances FCGR3A protein, human ; Immunoglobulin Fc Fragments ; Receptors, IgG ; Recombinant Fusion Proteins
    Language English
    Publishing date 2022-01-03
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Video-Audio Media
    ZDB-ID 2537838-7
    ISSN 1942-0870 ; 1942-0870
    ISSN (online) 1942-0870
    ISSN 1942-0870
    DOI 10.1080/19420862.2021.2004982
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Understanding the Thermal Denaturation of Myoglobin with IMS-MS: Evidence for Multiple Stable Structures and Trapped Pre-equilibrium States.

    Woodall, Daniel W / Henderson, Lucas W / Raab, Shannon A / Honma, Kenji / Clemmer, David E

    Journal of the American Society for Mass Spectrometry

    2020  Volume 32, Issue 1, Page(s) 64–72

    Abstract: Thermal denaturation of holomyoglobin (hMb) in solution (10 mM ammonium acetate at pH = 4.5, 6.8, and 9.0) was monitored by ion mobility spectrometry (IMS) and mass spectrometry (MS) techniques to characterize the stability and investigate structural ... ...

    Abstract Thermal denaturation of holomyoglobin (hMb) in solution (10 mM ammonium acetate at pH = 4.5, 6.8, and 9.0) was monitored by ion mobility spectrometry (IMS) and mass spectrometry (MS) techniques to characterize the stability and investigate structural changes involved in unfolding. We utilize two experimental approaches to induce thermal denaturation: a variable-temperature electrospray ionization (vT-ESI) source that heats the bulk solution in the ESI emitter, and a variable-power 10.6 μm CO
    Language English
    Publishing date 2020-07-07
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1073671-2
    ISSN 1879-1123 ; 1044-0305
    ISSN (online) 1879-1123
    ISSN 1044-0305
    DOI 10.1021/jasms.0c00075
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Characterizing Thermal Transitions of IgG with Mass Spectrometry.

    Brown, Christopher J / Woodall, Daniel W / El-Baba, Tarick J / Clemmer, David E

    Journal of the American Society for Mass Spectrometry

    2019  Volume 30, Issue 11, Page(s) 2438–2445

    Abstract: Variable temperature electrospray ionization (ESI) is coupled with mass spectrometry techniques in order to investigate structural transitions of monoclonal antibody immunoglobulin G (IgG) in a 100-mM ammonium acetate (pH 7.0) solution from 26 to 70 °C. ... ...

    Abstract Variable temperature electrospray ionization (ESI) is coupled with mass spectrometry techniques in order to investigate structural transitions of monoclonal antibody immunoglobulin G (IgG) in a 100-mM ammonium acetate (pH 7.0) solution from 26 to 70 °C. At 26 °C, the mass spectrum for intact IgG shows six charge states + 22 to + 26. Upon increasing the solution temperature, the fraction of low-charge states decreases and new, higher-charge state ions are observed. Upon analysis, it appears that heating the solution aids in desolvation of the intact IgG precursor. Above ~ 50 °C, a cleavage event between the light and heavy chains is observed. An analysis of the kinetics for these processes at different temperatures yields transition state thermochemistry of ΔH
    MeSH term(s) Hot Temperature ; Immunoglobulin G/analysis ; Immunoglobulin G/chemistry ; Kinetics ; Models, Molecular ; Spectrometry, Mass, Electrospray Ionization/methods
    Chemical Substances Immunoglobulin G
    Language English
    Publishing date 2019-07-30
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1073671-2
    ISSN 1879-1123 ; 1044-0305
    ISSN (online) 1879-1123
    ISSN 1044-0305
    DOI 10.1007/s13361-019-02292-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Melting of Hemoglobin in Native Solutions as measured by IMS-MS.

    Woodall, Daniel W / Brown, Christopher J / Raab, Shannon A / El-Baba, Tarick J / Laganowsky, Arthur / Russell, David H / Clemmer, David E

    Analytical chemistry

    2020  Volume 92, Issue 4, Page(s) 3440–3446

    Abstract: Thermally induced structural transitions of the quaternary structure of the hemoglobin tetramer (human) in aqueous solution (150 mM ammonium acetate) were investigated using a variable temperature electrospray ionization (vt-ESI) technique in combination ...

    Abstract Thermally induced structural transitions of the quaternary structure of the hemoglobin tetramer (human) in aqueous solution (150 mM ammonium acetate) were investigated using a variable temperature electrospray ionization (vt-ESI) technique in combination with ion mobility spectrometry (IMS) and mass spectrometry (MS) measurements. At low solution temperatures (28 to ∼40 °C), a heterotetrameric (α
    MeSH term(s) Hemoglobin A/analysis ; Humans ; Ion Mobility Spectrometry ; Mass Spectrometry ; Protein Structure, Secondary ; Solutions ; Temperature
    Chemical Substances Solutions ; Hemoglobin A (9034-51-9)
    Language English
    Publishing date 2020-02-07
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 1508-8
    ISSN 1520-6882 ; 0003-2700
    ISSN (online) 1520-6882
    ISSN 0003-2700
    DOI 10.1021/acs.analchem.9b05561
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Melting of Hemoglobin in Native Solutions as measured by IMS-MS

    Woodall, Daniel W / Brown, Christopher J / Raab, Shannon A / El-Baba, Tarick J / Laganowsky, Arthur / Russell, David H / Clemmer, David E

    Analytical chemistry. 2020 Jan. 28, v. 92, no. 4

    2020  

    Abstract: Thermally induced structural transitions of the quaternary structure of the hemoglobin tetramer (human) in aqueous solution (150 mM ammonium acetate) were investigated using a variable temperature electrospray ionization (vt-ESI) technique in combination ...

    Abstract Thermally induced structural transitions of the quaternary structure of the hemoglobin tetramer (human) in aqueous solution (150 mM ammonium acetate) were investigated using a variable temperature electrospray ionization (vt-ESI) technique in combination with ion mobility spectrometry (IMS) and mass spectrometry (MS) measurements. At low solution temperatures (28 to ∼40 °C), a heterotetrameric (α2β2) complex is the most abundant species that is observed. When the solution temperature is increased, this assembly dissociates into heterodimers (holo αβ forms) before ultimately forming insoluble aggregates at higher temperatures (>60 °C). In addition to the holo αβ forms, a small population of αβ dimers containing only a single heme ligand and having a dioxidation modification mapping to the β subunit are observed. The oxidized heterodimers are less stable than the unmodified holo-heterodimer. The Cys93 residue of the β subunit is the primary site of dioxidation. The close proximity of this post translational modification to both the αβ subunit interface and the heme binding site suggests that this modification is coupled to the loss of the heme and decreased protein stability. Changes in the charge state and collision cross sections of these species indicate that the tetramers and dimers favor less compact structures at elevated temperatures (prior to temperatures where dissociation dominates).
    Keywords ammonium acetate ; aqueous solutions ; binding sites ; dissociation ; electrospray ionization mass spectrometry ; heme ; hemoglobin ; humans ; ligands ; melting ; oxidation ; post-translational modification ; temperature
    Language English
    Dates of publication 2020-0128
    Size p. 3440-3446.
    Publishing place American Chemical Society
    Document type Article
    ZDB-ID 1508-8
    ISSN 1520-6882 ; 0003-2700
    ISSN (online) 1520-6882
    ISSN 0003-2700
    DOI 10.1021/acs.analchem.9b05561
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  8. Article ; Online: Substance P in the Gas Phase: Conformational Changes and Dissociations Induced by Collisional Activation in a Drift Tube.

    Conant, Christopher R / Fuller, Daniel R / Zhang, Zhichao / Woodall, Daniel W / Russell, David H / Clemmer, David E

    Journal of the American Society for Mass Spectrometry

    2019  Volume 30, Issue 6, Page(s) 932–945

    Abstract: The work presented below is related to our companion paper in this issue, entitled: Substance P in solution: trans-to-cis configurational changes of penultimate prolines initiate non-enzymatic peptide bond cleavages. Two-dimensional ion mobility ... ...

    Abstract The work presented below is related to our companion paper in this issue, entitled: Substance P in solution: trans-to-cis configurational changes of penultimate prolines initiate non-enzymatic peptide bond cleavages. Two-dimensional ion mobility spectrometry (IMS-IMS) and mass spectrometry techniques are used to investigate structural transitions for [M+3H]
    Language English
    Publishing date 2019-04-12
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1073671-2
    ISSN 1879-1123 ; 1044-0305
    ISSN (online) 1879-1123
    ISSN 1044-0305
    DOI 10.1007/s13361-019-02160-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Variable-Temperature ESI-IMS-MS Analysis of Myohemerythrin Reveals Ligand Losses, Unfolding, and a Non-Native Disulfide Bond.

    Woodall, Daniel W / El-Baba, Tarick J / Fuller, Daniel R / Liu, Wen / Brown, Christopher J / Laganowsky, Arthur / Russell, David H / Clemmer, David E

    Analytical chemistry

    2019  Volume 91, Issue 10, Page(s) 6808–6814

    Abstract: Variable-temperature electrospray ionization combined with ion mobility spectrometry (IMS) and mass spectrometry (MS) techniques are used to monitor structural transitions of the protein myohemerythrin from peanut worm in aqueous ammonium acetate ... ...

    Abstract Variable-temperature electrospray ionization combined with ion mobility spectrometry (IMS) and mass spectrometry (MS) techniques are used to monitor structural transitions of the protein myohemerythrin from peanut worm in aqueous ammonium acetate solutions from ∼15 to 92 °C. At physiological temperatures, myohemerythrin favors a four-helix bundle motif and has a diiron oxo cofactor that binds oxygen. As the solution temperature is increased from ∼15 to 35 °C, some bound oxygen dissociates; at ∼66 °C, the cofactor dissociates to produce populations of both folded and unfolded apoprotein. At higher temperatures (∼85 °C and above), the IMS-MS spectrum indicates that the folded apoprotein dominates, and provides evidence for stabilization of the structure by formation of a non-native disulfide bond. In total, we find evidence for 18 unique forms of myohemerythrin as well as information about the structures and stabilities of these states. The high-fidelity of IMS-MS techniques provides a means of examining the stabilities of individual components of complex mixtures that are inaccessible by traditional calorimetric and spectroscopic methods.
    MeSH term(s) Animals ; Disulfides/chemistry ; Helminth Proteins/analysis ; Helminth Proteins/chemistry ; Helminth Proteins/metabolism ; Hemerythrin/analysis ; Hemerythrin/chemistry ; Hemerythrin/metabolism ; Ion Mobility Spectrometry/methods ; Ligands ; Oxidation-Reduction ; Oxygen/metabolism ; Polychaeta/chemistry ; Protein Unfolding ; Spectrometry, Mass, Electrospray Ionization/methods ; Transition Temperature
    Chemical Substances Disulfides ; Helminth Proteins ; Hemerythrin ; Ligands ; myohemerythrin ; Oxygen (S88TT14065)
    Language English
    Publishing date 2019-05-09
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 1508-8
    ISSN 1520-6882 ; 0003-2700
    ISSN (online) 1520-6882
    ISSN 0003-2700
    DOI 10.1021/acs.analchem.9b00981
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Conformationally Regulated Peptide Bond Cleavage in Bradykinin.

    Fuller, Daniel R / Conant, Christopher R / El-Baba, Tarick J / Brown, Christopher J / Woodall, Daniel W / Russell, David H / Clemmer, David E

    Journal of the American Chemical Society

    2018  Volume 140, Issue 30, Page(s) 9357–9360

    Abstract: Ion mobility and mass spectrometry techniques are used to investigate the stabilities of different conformations of bradykinin (BK, ... ...

    Abstract Ion mobility and mass spectrometry techniques are used to investigate the stabilities of different conformations of bradykinin (BK, Arg
    MeSH term(s) Bradykinin/chemistry ; Humans ; Isomerism ; Kinetics ; Models, Chemical ; Protein Conformation ; Temperature ; Thermodynamics
    Chemical Substances Bradykinin (S8TIM42R2W)
    Language English
    Publishing date 2018-07-23
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 3155-0
    ISSN 1520-5126 ; 0002-7863
    ISSN (online) 1520-5126
    ISSN 0002-7863
    DOI 10.1021/jacs.8b04751
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