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  1. Article ; Online: A mechanistic study of Anwei decoction intervention in a rat model of gastric intestinal metaplasia through the endoplasmic reticulum stress - Autophagy pathway.

    Wu, De-Kun / Huang, Rui-Cheng / Tang, You-Ming / Jiang, Xian

    Tissue & cell

    2024  Volume 87, Page(s) 102317

    Abstract: Objective: To investigate the mechanism of Anwei decoction (AWD) intervention on gastric intestinal metaplasia (GIM) using a rat model through the endoplasmic reticulum stress-autophagy pathway.: Methods: Gastric intestinal metaplasia was induced in ... ...

    Abstract Objective: To investigate the mechanism of Anwei decoction (AWD) intervention on gastric intestinal metaplasia (GIM) using a rat model through the endoplasmic reticulum stress-autophagy pathway.
    Methods: Gastric intestinal metaplasia was induced in rats using 1-methyl-3-nitro-1-nitrosoguanidine. The experiment included a normal control group, a model group, and low-, medium- and high-dose AWD groups. The specificity of intestinal epithelial cells was determined for model establishment and drug efficacy by detecting the protein expression of markers such as MUC2, VILLIN and CDX2 through western blotting (WB). The effects of AWD on endoplasmic reticulum stress and autophagy were evaluated by measuring the mRNA and protein expression levels of endoplasmic reticulum stress markers (PEPK, ATF6, CHOP and caspase-12) and autophagy markers (LC3Ⅱ and Beclin-1) using reverse transcription polymerase chain reaction and the WB method. Furthermore, the ultrastructure of gastric mucosal cells and autophagosome status were observed using transmission electron microscopy.
    Results: Compared with the model group, the AWD-treated rats exhibited significant improvement in body weight (P < 0.01), reduced protein expression of the intestine epithelial cell-specific markers MUC2, VILLIN, CDX2 and KLF4 (P < 0.01 for all) and increased SOX2 protein expression (P < 0.01). In addition, AWD suppressed the mRNA and protein expression of endoplasmic reticulum stress markers PEPK and ATF6 (P < 0.01 for all) and promoted the mRNA and protein expression of autophagy and apoptosis markers CHOP, caspase-12, LC3Ⅱ and Beclin-1 (P < 0.01 for all).
    Conclusion: Anwei decoction effectively inhibits the further progression of GIM and prevents the occurrence of gastric mucosal carcinogenesis.
    MeSH term(s) Rats ; Animals ; Signal Transduction ; Beclin-1/genetics ; Beclin-1/pharmacology ; Caspase 12 ; Apoptosis ; RNA, Messenger ; Autophagy ; Endoplasmic Reticulum Stress ; Metaplasia
    Chemical Substances Beclin-1 ; Caspase 12 (EC 3.4.22.-) ; RNA, Messenger
    Language English
    Publishing date 2024-02-01
    Publishing country Scotland
    Document type Journal Article
    ZDB-ID 204424-9
    ISSN 1532-3072 ; 0040-8166
    ISSN (online) 1532-3072
    ISSN 0040-8166
    DOI 10.1016/j.tice.2024.102317
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Book ; Online: Deciphering Digital Detectives

    Wu, Dekun / Shi, Haochen / Sun, Zhiyuan / Liu, Bang

    Understanding LLM Behaviors and Capabilities in Multi-Agent Mystery Games

    2023  

    Abstract: In this study, we explore the application of Large Language Models (LLMs) in "Jubensha" (Chinese murder mystery role-playing games), a novel area in AI-driven gaming. We introduce the first Chinese dataset specifically for Jubensha, including character ... ...

    Abstract In this study, we explore the application of Large Language Models (LLMs) in "Jubensha" (Chinese murder mystery role-playing games), a novel area in AI-driven gaming. We introduce the first Chinese dataset specifically for Jubensha, including character scripts and game rules, to foster AI agent development in this complex narrative environment. Our work also presents a unique multi-agent interaction framework using LLMs, allowing AI agents to autonomously engage in the game, enhancing the dynamics of Jubensha gameplay. To evaluate these AI agents, we developed specialized methods targeting their mastery of case information and reasoning skills. Furthermore, we incorporated the latest advancements in in-context learning to improve the agents' performance in critical aspects like information gathering, murderer detection, and logical reasoning. The experimental results validate the effectiveness of our proposed methods. This work aims to offer a fresh perspective on understanding LLM capabilities and establish a new benchmark for evaluating large language model-based agents to researchers in the field.
    Keywords Computer Science - Artificial Intelligence ; I.2.0 ; I.2.1 ; I.2.7
    Subject code 006
    Publishing date 2023-12-01
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Juan-tong-yin potentially impacts endometriosis pathophysiology by enhancing autophagy of endometrial stromal cells via unfolded protein reaction-triggered endoplasmic reticulum stress.

    Meng, Fengyun / Li, Jing / Dong, Kun / Bai, Rui / Liu, Qiyu / Lu, Shijin / Liu, Ying / Wu, Dekun / Jiang, Chen / Li, Weihong

    Journal of ethnopharmacology

    2024  Volume 325, Page(s) 117859

    Abstract: Ethnopharmacological relevance: Endometriosis (EMs) is characterized by inflammatory lesions, dysmenorrhea, infertility, and chronic pelvic pain. Single-target medications often fail to provide systemic therapeutic results owing to the complex mechanism ...

    Abstract Ethnopharmacological relevance: Endometriosis (EMs) is characterized by inflammatory lesions, dysmenorrhea, infertility, and chronic pelvic pain. Single-target medications often fail to provide systemic therapeutic results owing to the complex mechanism underlying endometriosis. Although traditional Chinese medicines-such as Juan-Tong-Yin (JTY)-have shown promising results, their mechanisms of action remain largely unknown.
    Aim of the study: To elucidate the therapeutic mechanism of JTY in EMs, focusing on endoplasmic reticulum (ER) stress-induced autophagy.
    Materials and methods: The major components of JTY were detected using high-performance liquid chromatography-mass spectrometry (HPLC-MS). The potential mechanism of JTY in EMs treatment was predicted using network pharmacological analysis. Finally, the pathogenesis of EMs was validated in a clinical case-control study and the molecular mechanism of JTY was validated in vitro using endometrial stromal cells (ESCs).
    Results: In total, 241 compounds were analyzed and identified from JTY using UPLC-MS. Network pharmacology revealed 288 targets between the JTY components and EMs. Results of the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) analyses indicated that regulating autophagy, migration, apoptosis, and inflammation were the key mechanisms of JTY in treating EMs. Meanwhile, we found that protein kinase R-like endoplasmic reticulum kinase (PERK), Beclin-1, and microtubule-associated protein light chain 3 B (LC3B) expressions were lower in endometria of patients with EMs than in those with normal eutopic endometria (p < 0.05). Additionally, during in vitro experiments, treatment with 20% JTY-containing serum significantly suppressed ESC proliferation, achieving optimal effects after 48 h. Electron microscopy revealed significantly increased autophagy flux in the JTY group compared with the control group. Moreover, JTY treatment significantly reduced the migratory and invasive abilities of ESCs and upregulated protein expression of PERK, eukaryotic initiation factor 2α (eIF2α)/phospho-eukaryotic initiation factor 2α (p-eIF2α), activating Transcription Factor-4 (ATF4), Beclin-1, and LC3BII/I, while subsequently downregulating NOD-like receptor thermal protein domain associated protein 3 (NLRP3) and interleukin 18 (IL-18) expression. However, administration of GSK2656157-a highly selective PERK inhibitor-reversed these changes.
    Conclusion: JTY ameliorates EMs by activating PERK associated with unfolded protein reaction, enhancing cell ER stress and autophagy, improving the inflammatory microenvironment, and decreasing the migration and invasion of ESCs.
    MeSH term(s) Female ; Humans ; Signal Transduction ; Beclin-1/metabolism ; Endometriosis/pathology ; Case-Control Studies ; Chromatography, Liquid ; Tandem Mass Spectrometry ; Endoplasmic Reticulum Stress ; Autophagy ; Apoptosis ; Stromal Cells/metabolism ; Stromal Cells/pathology ; Peptide Initiation Factors/metabolism ; Peptide Initiation Factors/pharmacology
    Chemical Substances Beclin-1 ; Peptide Initiation Factors
    Language English
    Publishing date 2024-02-03
    Publishing country Ireland
    Document type Journal Article
    ZDB-ID 134511-4
    ISSN 1872-7573 ; 0378-8741
    ISSN (online) 1872-7573
    ISSN 0378-8741
    DOI 10.1016/j.jep.2024.117859
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Book ; Online: Sports Video Analysis on Large-Scale Data

    Wu, Dekun / Zhao, He / Bao, Xingce / Wildes, Richard P.

    2022  

    Abstract: This paper investigates the modeling of automated machine description on sports video, which has seen much progress recently. Nevertheless, state-of-the-art approaches fall quite short of capturing how human experts analyze sports scenes. There are ... ...

    Abstract This paper investigates the modeling of automated machine description on sports video, which has seen much progress recently. Nevertheless, state-of-the-art approaches fall quite short of capturing how human experts analyze sports scenes. There are several major reasons: (1) The used dataset is collected from non-official providers, which naturally creates a gap between models trained on those datasets and real-world applications; (2) previously proposed methods require extensive annotation efforts (i.e., player and ball segmentation at pixel level) on localizing useful visual features to yield acceptable results; (3) very few public datasets are available. In this paper, we propose a novel large-scale NBA dataset for Sports Video Analysis (NSVA) with a focus on captioning, to address the above challenges. We also design a unified approach to process raw videos into a stack of meaningful features with minimum labelling efforts, showing that cross modeling on such features using a transformer architecture leads to strong performance. In addition, we demonstrate the broad application of NSVA by addressing two additional tasks, namely fine-grained sports action recognition and salient player identification. Code and dataset are available at https://github.com/jackwu502/NSVA.
    Keywords Computer Science - Computer Vision and Pattern Recognition
    Subject code 004
    Publishing date 2022-08-09
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Bimetallic Covalent Organic Frameworks for Constructing Multifunctional Electrocatalyst.

    Wu, Dekun / Xu, Qing / Qian, Jing / Li, Xiaopeng / Sun, Yuhan

    Chemistry (Weinheim an der Bergstrasse, Germany)

    2019  Volume 25, Issue 12, Page(s) 3105–3111

    Abstract: Covalent organic frameworks (COFs) are a new class of crystalline porous polymers comprised mainly of carbon atoms, and are versatile for the integration of heteroatoms such as B, O, and N into the skeletons. The designable structure and abundant ... ...

    Abstract Covalent organic frameworks (COFs) are a new class of crystalline porous polymers comprised mainly of carbon atoms, and are versatile for the integration of heteroatoms such as B, O, and N into the skeletons. The designable structure and abundant composition render COFs useful as precursors for heteroatom-doped porous carbons for energy storage and conversion. Herein, we describe a multifunctional electrochemical catalyst obtained through pyrolysis of a bimetallic COF. The catalyst possesses hierarchical pores and abundant iron and cobalt nanoparticles embedded with standing carbon layers. By integrating these features, the catalyst exhibits excellent electrochemical catalytic activity in the oxygen reduction reaction (ORR), with a 50 mV positive half-wave potential, a higher limited diffusion current density, and a much smaller Tafel slope than a Pt-C catalyst. Moreover, the catalyst displays superior electrochemical performance toward the hydrogen evolution reaction (HER), with overpotentials of -0.26 V and -0.33 V in acidic and alkaline aqueous solution, respectively, at a current density of 10 mA cm
    Language English
    Publishing date 2019-02-04
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1478547-x
    ISSN 1521-3765 ; 0947-6539
    ISSN (online) 1521-3765
    ISSN 0947-6539
    DOI 10.1002/chem.201805550
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Book ; Online: A General FOFE-net Framework for Simple and Effective Question Answering over Knowledge Bases

    Wu, Dekun / Nosirova, Nana / Jiang, Hui / Xu, Mingbin

    2019  

    Abstract: Question answering over knowledge base (KB-QA) has recently become a popular research topic in NLP. One popular way to solve the KB-QA problem is to make use of a pipeline of several NLP modules, including entity discovery and linking (EDL) and relation ... ...

    Abstract Question answering over knowledge base (KB-QA) has recently become a popular research topic in NLP. One popular way to solve the KB-QA problem is to make use of a pipeline of several NLP modules, including entity discovery and linking (EDL) and relation detection. Recent success on KB-QA task usually involves complex network structures with sophisticated heuristics. Inspired by a previous work that builds a strong KB-QA baseline, we propose a simple but general neural model composed of fixed-size ordinally forgetting encoding (FOFE) and deep neural networks, called FOFE-net to solve KB-QA problem at different stages. For evaluation, we use two popular KB-QA datasets, SimpleQuestions and WebQSP, and a newly created dataset, FreebaseQA. The experimental results show that FOFE-net performs well on KB-QA subtasks, entity discovery and linking (EDL) and relation detection, and in turn pushing overall KB-QA system to achieve strong results on all datasets.

    Comment: 11 pages
    Keywords Computer Science - Computation and Language ; Computer Science - Artificial Intelligence
    Subject code 006
    Publishing date 2019-03-29
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Book ; Online: ENT-DESC

    Cheng, Liying / Wu, Dekun / Bing, Lidong / Zhang, Yan / Jie, Zhanming / Lu, Wei / Si, Luo

    Entity Description Generation by Exploring Knowledge Graph

    2020  

    Abstract: Previous works on knowledge-to-text generation take as input a few RDF triples or key-value pairs conveying the knowledge of some entities to generate a natural language description. Existing datasets, such as WIKIBIO, WebNLG, and E2E, basically have a ... ...

    Abstract Previous works on knowledge-to-text generation take as input a few RDF triples or key-value pairs conveying the knowledge of some entities to generate a natural language description. Existing datasets, such as WIKIBIO, WebNLG, and E2E, basically have a good alignment between an input triple/pair set and its output text. However, in practice, the input knowledge could be more than enough, since the output description may only cover the most significant knowledge. In this paper, we introduce a large-scale and challenging dataset to facilitate the study of such a practical scenario in KG-to-text. Our dataset involves retrieving abundant knowledge of various types of main entities from a large knowledge graph (KG), which makes the current graph-to-sequence models severely suffer from the problems of information loss and parameter explosion while generating the descriptions. We address these challenges by proposing a multi-graph structure that is able to represent the original graph information more comprehensively. Furthermore, we also incorporate aggregation methods that learn to extract the rich graph information. Extensive experiments demonstrate the effectiveness of our model architecture.

    Comment: 11 pages, 6 figures, accepted by EMNLP 2020
    Keywords Computer Science - Computation and Language
    Subject code 004
    Publishing date 2020-04-30
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Book ; Online: Scene Classification in Indoor Environments for Robots using Context Based Word Embeddings

    Chen, Bao Xin / Sahdev, Raghavender / Wu, Dekun / Zhao, Xing / Papagelis, Manos / Tsotsos, John K.

    2019  

    Abstract: Scene Classification has been addressed with numerous techniques in computer vision literature. However, with the increasing number of scene classes in datasets in the field, it has become difficult to achieve high accuracy in the context of robotics. In ...

    Abstract Scene Classification has been addressed with numerous techniques in computer vision literature. However, with the increasing number of scene classes in datasets in the field, it has become difficult to achieve high accuracy in the context of robotics. In this paper, we implement an approach which combines traditional deep learning techniques with natural language processing methods to generate a word embedding based Scene Classification algorithm. We use the key idea that context (objects in the scene) of an image should be representative of the scene label meaning a group of objects could assist to predict the scene class. Objects present in the scene are represented by vectors and the images are re-classified based on the objects present in the scene to refine the initial classification by a Convolutional Neural Network (CNN). In our approach we address indoor Scene Classification task using a model trained with a reduced pre-processed version of the Places365 dataset and an empirical analysis is done on a real-world dataset that we built by capturing image sequences using a GoPro camera. We also report results obtained on a subset of the Places365 dataset using our approach and additionally show a deployment of our approach on a robot operating in a real-world environment.
    Keywords Computer Science - Robotics ; Computer Science - Computer Vision and Pattern Recognition
    Subject code 004
    Publishing date 2019-08-18
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Standing Carbon-Supported Trace Levels of Metal Derived from Covalent Organic Framework for Electrocatalysis.

    Xu, Qing / Zhang, Hao / Guo, Yu / Qian, Jing / Yang, Shuai / Luo, Dan / Gao, Peng / Wu, Dekun / Li, Xiaopeng / Jiang, Zheng / Sun, Yuhan

    Small (Weinheim an der Bergstrasse, Germany)

    2019  Volume 15, Issue 50, Page(s) e1905363

    Abstract: Single atom catalysts (SACs) are receiving increasing interests due to their high theoretical catalytic efficiency and intriguing physiochemical properties. However, most of the synthetic methodologies involve high-temperature treatment. This usually ... ...

    Abstract Single atom catalysts (SACs) are receiving increasing interests due to their high theoretical catalytic efficiency and intriguing physiochemical properties. However, most of the synthetic methodologies involve high-temperature treatment. This usually leads to limited control over the spatial distribution of metal sites and collapse of porous network that result in limited active site exposure. A strategy to construct SAC by using a covalent organic framework as the precursor is reported in this study. The as-prepared catalyst is mainly composed of standing carbon layers with the presence of edge-site hosted metal single atoms. Such structure configuration not only allows full site exposure but also endows the metal site with high intrinsic activity. With a trace amount of cobalt loading (0.17 wt%), the nanorice-shaped catalyst displays promising electrochemical activities toward catalyzing the oxygen reduction reaction in both alkaline and acidic medium. An ultrahigh mass activity of 838 A g
    Language English
    Publishing date 2019-11-13
    Publishing country Germany
    Document type Journal Article
    ISSN 1613-6829
    ISSN (online) 1613-6829
    DOI 10.1002/smll.201905363
    Database MEDical Literature Analysis and Retrieval System OnLINE

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