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Article ; Online: Development and Structural Analysis of Antibody Therapeutics for Filoviruses

Xiaoying Yu / Erica Ollmann Saphire

Pathogens, Vol 11, Iss 374, p

2022 Volume 374

Abstract: The filoviruses, including ebolaviruses and marburgviruses, are among the world’s deadliest pathogens. As the only surface-exposed protein on mature virions, their glycoprotein GP is the focus of current therapeutic monoclonal antibody discovery efforts. ...

Abstract	The filoviruses, including ebolaviruses and marburgviruses, are among the world’s deadliest pathogens. As the only surface-exposed protein on mature virions, their glycoprotein GP is the focus of current therapeutic monoclonal antibody discovery efforts. With recent technological developments, potent antibodies have been identified from immunized animals and human survivors of virus infections and have been characterized functionally and structurally. Structural insight into how the most successful antibodies target GP further guides vaccine development. Here we review the recent developments in the identification and characterization of neutralizing antibodies and cocktail immunotherapies.
Keywords	antibody therapeutic ; cryo-EM ; ebolavirus ; filovirus ; marburgvirus ; structural biology ; Medicine ; R
Language	English
Publishing date	2022-03-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Efficacy of resveratrol supplementation on liver enzymes in patients with non-alcoholic fatty liver disease

Shumin Wei / Xiaoying Yu

Complementary Therapies in Medicine, Vol 57, Iss , Pp 102635- (2021)

A systematic review and meta-analysis

2021

Abstract: Objective: Randomized clinical trials (RCTs) examining the effects of resveratrol supplementation on liver enzymes in non-alcoholic fatty liver disease (NAFLD) have reported conflicting results. The aim of this systematic review was to summarize evidence ...

Abstract	Objective: Randomized clinical trials (RCTs) examining the effects of resveratrol supplementation on liver enzymes in non-alcoholic fatty liver disease (NAFLD) have reported conflicting results. The aim of this systematic review was to summarize evidence of the effects of resveratrol supplementation on alanine aminotransferase (ALT), and aspartate aminotransferase (AST) levels in patients with NAFLD by performing a meta-analysis of RCTs. Methods: PubMed, Cochrane Library, Scopus, and Web of Science databases were electronically explored from inception to August 2020 for all relevant studies. Random effect models were used to estimate liver enzymes changes between resveratrol supplementation and control groups by evaluating the weighted mean differences (WMD) with 95 % confidence intervals (CIs). Results: Five trials with a total of 216 patients were included in the meta-analysis. The pooled results showed that resveratrol supplementation did not result in significant changes in serum ALT (WMD= -2.48 IU/L; 95 % CI: -12.30, 7.34; P = 0.62), and AST (WMD = -2.90 IU/L; 95 % CI: -9.77, 3.98; P = 0.40) concentrations. Subgroup analysis revealed a significant reduction in serum ALT and AST concentrations in the participants with mean age <45 years, and studies with intervention dosage <1000 mg/day. In addition, ALT and AST levels were decreased significantly in studies with duration >12 weeks and participants with BMI < 30 kg/m2, respectively. Conclusions: The overall results indicated that resveratrol supplementation did not affect liver enzymes in patients with NAFLD. More studies examining the effect of resveratrol supplementation on liver enzymes are needed in the future.
Keywords	Resveratrol ; Liver enzymes ; Non-alcoholic fatty liver disease ; Meta-Analysis ; Other systems of medicine ; RZ201-999
Subject code	610
Language	English
Publishing date	2021-03-01T00:00:00Z
Publisher	Elsevier
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Meta-Analysis of the Effects of Biochar Application on the Diversity of Soil Bacteria and Fungi

Mingyu Wang / Xiaoying Yu / Xiaohong Weng / Xiannan Zeng / Mengsha Li / Xin Sui

Microorganisms, Vol 11, Iss 641, p

2023 Volume 641

Abstract: Biochar is increasingly being used for soil improvement, but the effects on microbial diversity in soil are still ambiguous due to contrasting results reported in the literature. We conducted a meta-analysis to clarify the effect of biochar addition on ... ...

Abstract	Biochar is increasingly being used for soil improvement, but the effects on microbial diversity in soil are still ambiguous due to contrasting results reported in the literature. We conducted a meta-analysis to clarify the effect of biochar addition on soil bacterial and fungal diversity with an increase in Shannon or Chao1 index as the outcome. Different experimental setups, quantitative levels of biochar addition, various biochar source materials and preparation temperatures, and the effect of natural precipitation in field experiments were the investigated variables. From a total of 95 publications identified for analysis, 384 datasets for Shannon index and 277 datasets for Chao1 index were extracted that described the bacterial diversity in the soils, of which field experiments and locations in China dominated. The application of biochar in soil significantly increased the diversity of soil bacteria but it had no significant effect on the diversity of fungi. Of the different experimental setups, the largest increase in bacterial diversity was seen for field experiments, followed by pot experiments, but laboratory and greenhouse settings did not report a significant increase. In field experiments, natural precipitation had a strong effect, and biochar increased bacterial diversity most in humid conditions (mean annual precipitation, MAP > 800 mm), followed by semi-arid conditions (MAP 200–400 mm). Biochar prepared from herbaceous materials was more effective to increase bacterial diversity than other raw materials and the optimal pyrolysis temperature was 350–550 °C. Addition of biochar at various levels produced inconclusive data for Chao1 and Shannon indices, and its effect was less strong than that of the other assessed variables.
Keywords	alpha diversity ; bacteria ; biochar ; soil microbial diversity ; meta-analysis ; Biology (General) ; QH301-705.5
Subject code	910
Language	English
Publishing date	2023-03-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Differential cellular immune responses against Orientia tsutsugamushi Karp and Gilliam strains following acute infection in mice.

Joseph D Thiriot / Yuejin Liang / Casey Gonzales / Jiaren Sun / Xiaoying Yu / Lynn Soong

PLoS Neglected Tropical Diseases, Vol 17, Iss 12, p e

2023 Volume 0011445

Abstract: Scrub typhus is a leading cause of febrile illness in endemic countries due to infection with Orientia tsutsugamushi (Ot), a seriously understudied intracellular bacterium. Pulmonary involvement associated with vascular parasitism in patients is common ... ...

Abstract	Scrub typhus is a leading cause of febrile illness in endemic countries due to infection with Orientia tsutsugamushi (Ot), a seriously understudied intracellular bacterium. Pulmonary involvement associated with vascular parasitism in patients is common and can develop into life threatening interstitial pneumonia. The diverse antigenicity of Ot genotypes and inter-strain differences in genome content are connected to varied virulence and clinical outcomes; however, detailed studies of strain-related pulmonary immune responses in human patients or small animal models of infection are lacking. In this study, we have used two clinically prevalent bacterial strains (Karp and Gilliam) to reveal cellular immune responses in inflamed lungs and potential biomarkers of disease severity. The results demonstrate that outbred CD-1 mice are highly susceptible to both Karp and Gilliam strains; however, C57BL/6 (B6) mice were susceptible to Karp, but resistant to Gilliam (with self-limiting infection), corresponding to their tissue bacterial burdens and lung pathological changes. Multicolor flow cytometric analyses of perfused B6 mouse lungs revealed robust and sustained influx and activation of innate immune cells (macrophages, neutrophils, and NK cells), followed by CD4+ and CD8+ T cells, during Karp infection, but such responses were greatly attenuated during Gilliam infection. The robust cellular responses in Karp-infected B6 mice positively correlated with significantly early and high levels of serum cytokine/chemokine protein levels (CXCL1, CCL2/3/5, and G-CSF), as well as pulmonary gene expression (Cxcl1/2, Ccl2/3/4, and Ifng). In vitro infection of B6 mouse-derived primary macrophages also revealed bacterial strain-dependent immune gene expression profiles. This study provided the lines of evidence that highlighted differential tissue cellular responses against Karp vs. Gilliam infection, offering a framework for future investigation of Ot strain-related mechanisms of disease pathogenesis vs. infection control.
Keywords	Arctic medicine. Tropical medicine ; RC955-962 ; Public aspects of medicine ; RA1-1270
Language	English
Publishing date	2023-12-01T00:00:00Z
Publisher	Public Library of Science (PLoS)
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Seasonal Variation in Chemical Compositions of Essential Oils Extracted from Lavandin Flowers in the Yun-Gui Plateau of China

Zhenni Liao / Qing Huang / Qiming Cheng / Sardar Khan / Xiaoying Yu

Molecules, Vol 26, Iss 5639, p

2021 Volume 5639

Abstract: Lavandin, as an important cash crop, is cultivated in Kunming, Yun-Gui Plateau of China. For the special growing environment, Lavandin was grown here and used to investigate the changes in the yield and chemical compositions of essential oils extracted ... ...

Abstract	Lavandin, as an important cash crop, is cultivated in Kunming, Yun-Gui Plateau of China. For the special growing environment, Lavandin was grown here and used to investigate the changes in the yield and chemical compositions of essential oils extracted from the flowers in different seasons. The essential oils were extracted by hydro-distillation and analysis by gas chromatography-mass spectrometry (GC-MS). Results indicated great changes in chemical composition depending on the season of harvesting. The yields of essential oils ranged from 2.0% to 3.8% among the seasons, and the highest yield was in the summer. Chemical composition data showed that the extracted oils were rich in oxygenated monoterpenes (55.4–81.4%), eucalyptol (38.7–49.8%), camphor (8.41–14.26%), α-bisabolol (6.6–25.5%), and linalool (4.6–12.5%). The contents of eucalyptol and α-bisabolol changed in a contrary trend with seasonal variations. The results provided new insight for Chinese Lavandin germplasm to be used in application and development, and reference to the researcher, the farmer, and investor for sustainable industrialization of the plant grown in the Yun-Gui Plateau of China, but also the similar plateau area of the sustainable developments.
Keywords	Lavandin ; essential oil ; Yun-Gui Plateau ; monoterpenes ; eucalyptol ; camphor ; Organic chemistry ; QD241-441
Subject code	550
Language	English
Publishing date	2021-09-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Prediction of train wheel diameter based on Gaussian process regression optimized using a fast simulated annealing algorithm.

Xiaoying Yu / Hongsheng Su / Zeyuan Fan / Yu Dong

PLoS ONE, Vol 14, Iss 12, p e

2019 Volume 0226751

Abstract: An algorithm to predict train wheel diameter based on Gaussian process regression (GPR) optimized using a fast simulated annealing algorithm (FSA-GPR) is proposed in this study to address the problem of dynamic decrease in wheel diameter with increase in ...

Abstract	An algorithm to predict train wheel diameter based on Gaussian process regression (GPR) optimized using a fast simulated annealing algorithm (FSA-GPR) is proposed in this study to address the problem of dynamic decrease in wheel diameter with increase in mileage, which affects the measurement accuracy of train speed and location, as well as the hyper-parameter problem of the GPR in the traditional conjugate gradient algorithm. The algorithm proposed as well as other popular algorithms in the field, such as the traditional GPR algorithm, and GPR algorithms optimized using the artificial bee colony algorithm (ABC-GPR) or genetic algorithm (GA-GPR), were used to predict the wheel diameter of a DF11 train in a section of a railway during a period of major repairs. The results predicted by FSA-GPR was compared with other three algorithms as well as the real measured data from RMSE, MAE, R2 and Residual value. And the comparisons showed that the predictions obtained from the GPR optimized using FSA algorithm were more accurate than those based on the others. Therefore, this algorithm can be incorporated into the vehicle-mounted speed measurement module to automatically update the value of wheel diameter, thereby substantially reducing the manual work entailed therein and improving the effectiveness of measuring the speed and position of the train.
Keywords	Medicine ; R ; Science ; Q
Subject code	629
Language	English
Publishing date	2019-01-01T00:00:00Z
Publisher	Public Library of Science (PLoS)
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Phenotypic Diversity Analysis of the Progeny Variation of a ‘Mosaic Leaf’ Loropetalum chinense var. rubrum Based on Flower Organ Characteristics

Li Zhang / Xiaoying Yu / Xia Zhang / Damao Zhang / Weidong Li / Lili Xiang / Yujie Yang / Yanlin Li / Lu Xu

Diversity, Vol 14, Iss 913, p

2022 Volume 913

Abstract: Loropetalum chinense var. rubrum is a common landscape plant. Because of the preference for the ‘red leaf’ trait, the ‘flower color’ trait was ignored in breeding, and the genetic diversity of L. chinense var. rubrum was replaced by a few genotypes. ... ...

Abstract	Loropetalum chinense var. rubrum is a common landscape plant. Because of the preference for the ‘red leaf’ trait, the ‘flower color’ trait was ignored in breeding, and the genetic diversity of L. chinense var. rubrum was replaced by a few genotypes. Therefore, the potential value of flower color traits was affected, and the genetic diversity was not fully exploited. In this study, we utilized a cultivar with mosaic-colored flowers and leaves and observed 15 phenotypic traits in its flower organs and its progeny, as well as a total of 60 different flower color materials. We analyzed the variation characteristics and diversity of flower colors, and qualitatively described and preliminarily classified flower colors using the ISCC-NBS and CIELab systems to explore the correlation with the flower color phenotype from the distribution and content of anthocyanins. The phenotypic diversity of the flower organs was enriched, and genetic differences in flower color were significant for the L. chinense var. rubrum , with most of the 15 phenotypic traits showing significant positive correlations, and the most critical phenotypes are sepal, petal and nectary color, as well as petal length. According to the CIELab color system and anthocyanin content and distribution characteristics, it is considered more accurate and convenient to classify the color phenotypes of L. chinense var. rubrum flowers into five categories. In this study, for the first time, the flower organ phenotype of L. chinense var. rubrum has been systematically analyzed, and it is explored as a reference method for breeding new cultivars of a diverse range of colors in L. chinense var. rubrum .
Keywords	Loropetalum chinense var. rubrum ; flower organ ; phenotypic characteristics ; diversity analysis ; Biology (General) ; QH301-705.5
Subject code	580
Language	English
Publishing date	2022-10-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Chinese Residents’ Perceived Ecosystem Services and Disservices Impacts Behavioral Intention for Urban Community Garden

Can Wu / Xiaoma Li / Yuqing Tian / Ziniu Deng / Xiaoying Yu / Shenglan Wu / Di Shu / Yulin Peng / Feipeng Sheng / Dexin Gan

Agronomy, Vol 12, Iss 193, p

An Extension of the Theory of Planned Behavior

2022 Volume 193

Abstract: Urban community gardens (UCGs), greenspace cultivated and managed for vegetables by local communities, provide substantial ecosystem services (ES) and are warmly welcomed by residents. However, they also have many ecosystem disservices (EDS) and are ... ...

Abstract	Urban community gardens (UCGs), greenspace cultivated and managed for vegetables by local communities, provide substantial ecosystem services (ES) and are warmly welcomed by residents. However, they also have many ecosystem disservices (EDS) and are almost always refused by the decision-makers of the government, especially in China. Better understanding the residents’ perceived ES and EDS and the impact on the behavioral intention (BI) toward UCGs is of great value to solve the conflicts between residents and the government concerning UCGs and to develop sustainable UCGs. Following the theory of planned behavior (TPB), we measured perceived ES/EDS, attitudes (ATT), perceived behavioral control (PBC), subjective norm (SN), and BI of 1142 residents in Changsha, China, and investigated their direct and indirect causal relationships using structural equation modeling (SEM). The results showed that: (1) ATT, PBC, and SN significantly and positively impact the BI of UCGs and together explained 54% of the variation of BI. (2) The extended TPB model with additional components of perceived ED/EDS improved the explanatory ability of the model, explaining 65% of the variance of BI. Perceived ES and perceived EDS showed significant direct positive and negative impacts on UCGs, respectively. They also indirectly impacted BI by influencing ATT, PBC, and SN. The findings of this study can extend our understanding of residents’ attitudes, behavior, and driving mechanism toward UCGs, and can help decision makers to design better policies for UCG planning and management.
Keywords	urban community garden ; ecosystem service and disservice ; behavioral intention ; theory of planned behavior ; structural equation model ; Agriculture ; S
Subject code	710
Language	English
Publishing date	2022-01-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article: The role effects of dietary fiber on intestinal microbial composition and digestive physiological functions of pigs: A review

Hussein, Saddam / Xiaoying, Yu / Farouk, Mohammed Hamdy / Abdeen, Ahmed / Hussein, Abdelaziz / Hailong, Jiang

Indian journal of animal research. 2021 July, v. 55, no. 7

2021

Abstract: The intestinal microbes do not only provide nutrients for their host, but it also contributes to the maintenance of intestinal micro ecological balance, which are essential for ensuring a healthy development of the intestine, dietary fiber is one of the ... ...

Abstract	The intestinal microbes do not only provide nutrients for their host, but it also contributes to the maintenance of intestinal micro ecological balance, which are essential for ensuring a healthy development of the intestine, dietary fiber is one of the substrates for intestinal microbial fermentation. This can improve the structure of intestinal microflora and is of great significance in maintaining intestinal health. The research on the efficacy of dietary fiber on pig intestinal microbes and the factors affecting the intestinal microbial utilization of dietary fibre in pigs is reviewed, which provides a theoretical basis for further research on the production practice of dietary fiber addition in pig breeding industry. As well, a good digestive physiological environment is essential for pigs to benefit from the nutrients and to increase their productivity. Adding the appropriate amounts of fiber to pig diets plays an important role in regulating the digestive physiology of pig intestinal microflora, digestive tract pH, digestive juice secretion, digestive enzyme activity, digestive tract organs and their morphology. This article reviews the effects of dietary fiber on the digestive physiology of pigs.
Keywords	animal research ; dietary fiber ; digestive enzymes ; digestive physiology ; digestive tract ; ecological balance ; enzyme activity ; fermentation ; industry ; intestinal microorganisms ; intestines ; pH ; secretion ; swine
Language	English
Dates of publication	2021-07
Size	p. 737-743.
Publishing place	Agricultural Research Communication Centre
Document type	Article
ISSN	0976-0555
DOI	10.18805/IJAR.B-1345
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Leaf color change and photosystem function evaluation under heat treatment revealed the stress resistance variation between Loropetalum chinense and L. chinense var. rubrum

Wenqi Cai / Damao Zhang / Xia Zhang / Qianru Chen / Yang Liu / Ling Lin / Lili Xiang / Yujie Yang / Lu Xu / Xiaoying Yu / Yanlin Li

PeerJ, Vol 11, p e

2023 Volume 14834

Abstract: This research mainly focused on the leaf color change and photosystem function differentiation between Loropetalum chinense and its variety L. chinense var. rubrum under heat stress, which were tightly concerned about their ornamental traits and growth. ... ...

Abstract	This research mainly focused on the leaf color change and photosystem function differentiation between Loropetalum chinense and its variety L. chinense var. rubrum under heat stress, which were tightly concerned about their ornamental traits and growth. L. chinense ‘Xiangnong Xiangyun’ (X) and L. chinense var. rubrum ‘Xiangnong Fendai’ (F) and L. chinense var. rubrum ‘Hei Zhenzhu’ (H) were chosen to be experimented on to investigate whether leaf color morphology and pigment composition could influence the adaptability of plants to high temperature in order to select foliage plants which posses stable leaf color and better adaptability for hot regions. The plants were cultured in hot environment (40 °C/33 °C, day/night) and normal environment (25 °C/18 °C, day/night). Phenotype and anatomic observation of three cultivars were made and leaf color indices and pigment contents were measured. During the experiment, H and F gradually turned green, total anthocyanins contents significantly decreased in them, however, chlorophyll b contents increased in all three cultivars. In addition, the initial fluorescence (Fo) decreased in X, while increased in H and F. For the maximum fluorescence (Fm) and maximum photochemical efficiency of PSII (Fv/Fm), they only increased in H and decreased in both F and X. The non-photochemical chlorophyll fluorescence quenching (NPQ) also increased in H and decreased in F. For X, it increased at first then gradually decreased. The coefficient of photochemical quenching all increased at first then gradually decreased. Correlation analysis between showed that there was relatively strong connection between anthocyanins, flavonoids and chlorophyll fluorescence parameters, especially NPQ, proved anthocyanins and flavonoids might not only involved in enriching leaf color, but also interfered with the protection of photosystem. Generally speaking, we found higher anthocyanin and flavonoids content level not only dramatically enriched the leaf color of L. chinense var. rubrum cultivars, but also ...
Keywords	Heat stress ; Leaf color ; Photosystem function ; Loropetalum chinense var. rubrum ; Medicine ; R ; Biology (General) ; QH301-705.5
Subject code	580
Language	English
Publishing date	2023-02-01T00:00:00Z
Publisher	PeerJ Inc.
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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