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  1. Article ; Online: Anthraquinone metabolites isolated from the rhizosphere soil Streptomyces of Panax notoginseng (Burk.) F. H. Chen target MMP2 to inhibit cancer cell migration

    Xue, Jin-Yan / Wu, Ying Ying / Han, Yu-Ling / Song, Xin-Yu / Zhang, Meng-Yue / Cheng, Juan / Lin, Bin / Xia, Ming-Yu / Zhang, Yi-Xuan

    Journal of Ethnopharmacology. 2023, p.116457-

    2023  , Page(s) 116457–

    Abstract: Panax notoginseng (Burk.) F. H. Chen belongs to the Araliaceae family. It has been used by traditional Chinese people in Northeast Asia for centuries as an antidiabetic, antioxidant, antitumor agent, etc. Endophytic or rhizospheric microorganisms play ... ...

    Abstract Panax notoginseng (Burk.) F. H. Chen belongs to the Araliaceae family. It has been used by traditional Chinese people in Northeast Asia for centuries as an antidiabetic, antioxidant, antitumor agent, etc. Endophytic or rhizospheric microorganisms play key roles in plant defense mechanisms, and they are essential in the discovery of pharmaceuticals and valuable new secondary metabolites. In particular, endophytic or rhizospheric microorganisms of traditional medicinal plants. To discover valuable new secondary metabolites from rhizosphere soil Streptomyces sp. SYP-A7185 of P. notoginseng, and to explore potential bioactivities and targets of metabolites protrusive function. The metabolites were obtained via column chromatography and identified by multiple spectroscopic analyses. The antitumor, antioxidant, antibacterial, and antiglycosidases effects of isolated metabolites were tested using 3-[4,5-dimethythiazol-2-yl]-2,5-diphenyltetazolium bromide (MTT), 2,2-diphenyl-1-picrylhydrazyl (DPPH), 96-well turbidimetric, and α-glucosidase inhibitory assays. The potential antitumor targets were predicted through network pharmacological approaches. The interactions between metabolites and target were verified by molecular docking and biolayer interferometry (BLI) assay. The effects of cancer cells migration were detected through wound healing assays in A549 and MCF-7. Other cellular validation experiments including reverse transcription-quantitative PCR (RT‒qPCR) and western blotting (WB) were used to confirm the hypothesis of network pharmacology. Five different chemotypes of anthraquinone derivatives (1-10), including six new compounds (3, 6-10), were identified from Streptomyces sp. SYP-A7185. Compounds 1-6 and 9 displayed moderate to strong cytotoxicity on five human cancer cell lines (A549, HepG2, MCF-7, MDA-MD-231, and MGC-803). Moreover, matrix metalloproteinase-2 (MMP2) were predicted as a potential antitumor target of metabolites 1-6 and 9 by comprehensive network pharmacology analysis. Later, BLI assays revealed strong intermolecular interactions between MMP2 and antitumor metabolites, and molecular docking results showed the interaction of metabolites 1-6 and 9 with MMP2 was dependent on the crucial amino acid residues of LEU-83, ALA-84, LEU-117, HIS-131, PRO-135, GLY-136, ALA-140, PRO-141, TYR-143, and THR-144. These results implied that metabolites (1-6 and 9) might inhibit cancer cell migration besides cancer cell proliferation. After that, the cell wound healing assay showed that the cell migration processes were also inhibited after the treatments of compounds 1 and 3 in A549 and MCF-7 cells. In addition, the RT‒qPCR and WB results demonstrated that the gene expression levels of MMP2 were decreased after the treatment with compounds 1 and 3 in A549 and MCF-7 cells. Besides, compound 2 displayed moderate antioxidant activity (EC₅₀, 27.43 μM), compounds 3 and 6 exhibited moderate antibacterial activity, and compound 3 inhibited α-glucosidase with an IC₅₀ value of 13.10 μM. Anthraquinone metabolites, from rhizosphere soil Streptomyces sp. of P. notoginseng, possess antitumor, antioxidant, antibacterial, and antiglycosidase activities. Moreover, metabolites 1 and 3 inhibit cancer cells migration through downregulating MMP2.
    Keywords 2,2-diphenyl-1-picrylhydrazyl ; Chinese people ; Panax notoginseng ; Streptomyces ; amino acids ; anthraquinones ; antibacterial properties ; antineoplastic agents ; antioxidant activity ; antioxidants ; cell movement ; cell proliferation ; chemotypes ; chromatography ; cytotoxicity ; endophytes ; gelatinase A ; gene expression ; humans ; interferometry ; neoplasm cells ; pharmacology ; rhizosphere ; secondary metabolites ; soil ; spectroscopy ; traditional medicine ; Asia ; Anthraquinone ; Network pharmacology ; Matrix metalloproteinases-2 ; Cancer cell migration ; 5-FU ; A549 ; BLI ; CD ; CFU/mL ; DPPH ; EC50 ; ECD ; GAPDH ; GO ; HepG2 ; HPLC ; HR-ESI-MS ; IR ; IC50 ; KEGG ; MCF-7 ; MDA-MB-231 ; MGC-803 ; MHB ; MIC90 ; MMP2 ; MMPs ; MTT ; Ni-NTA ; NMR ; NOESY ; OR ; pNPG ; PPI ; RT‒qPCR ; TLC ; UV ; WB
    Language English
    Publishing place Elsevier B.V.
    Document type Article ; Online
    Note Pre-press version
    ZDB-ID 134511-4
    ISSN 1872-7573 ; 0378-8741
    ISSN (online) 1872-7573
    ISSN 0378-8741
    DOI 10.1016/j.jep.2023.116457
    Database NAL-Catalogue (AGRICOLA)

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  2. Article ; Online: Anthraquinone metabolites isolated from the rhizosphere soil Streptomyces of Panax notoginseng (Burk.) F. H. Chen target MMP2 to inhibit cancer cell migration.

    Xue, Jin-Yan / Wu, Ying-Ying / Han, Yu-Ling / Song, Xin-Yu / Zhang, Meng-Yue / Cheng, Juan / Lin, Bin / Xia, Ming-Yu / Zhang, Yi-Xuan

    Journal of ethnopharmacology

    2023  Volume 312, Page(s) 116457

    Abstract: Ethnopharmacological relevance: Panax notoginseng (Burk.) F. H. Chen belongs to the Araliaceae family. It has been used by traditional Chinese people in Northeast Asia for centuries as an antidiabetic, antioxidant, antitumor agent, etc. Endophytic or ... ...

    Abstract Ethnopharmacological relevance: Panax notoginseng (Burk.) F. H. Chen belongs to the Araliaceae family. It has been used by traditional Chinese people in Northeast Asia for centuries as an antidiabetic, antioxidant, antitumor agent, etc. Endophytic or rhizospheric microorganisms play key roles in plant defense mechanisms, and they are essential in the discovery of pharmaceuticals and valuable new secondary metabolites. In particular, endophytic or rhizospheric microorganisms of traditional medicinal plants.
    Aim of the study: To discover valuable new secondary metabolites from rhizosphere soil Streptomyces sp. SYP-A7185 of P. notoginseng, and to explore potential bioactivities and targets of metabolites protrusive function.
    Materials and methods: The metabolites were obtained via column chromatography and identified by multiple spectroscopic analyses. The antitumor, antioxidant, antibacterial, and antiglycosidases effects of isolated metabolites were tested using 3-[4,5-dimethythiazol-2-yl]-2,5-diphenyltetazolium bromide (MTT), 2,2-diphenyl-1-picrylhydrazyl (DPPH), 96-well turbidimetric, and α-glucosidase inhibitory assays. The potential antitumor targets were predicted through network pharmacological approaches. The interactions between metabolites and target were verified by molecular docking and biolayer interferometry (BLI) assay. The effects of cancer cells migration were detected through wound healing assays in A549 and MCF-7. Other cellular validation experiments including reverse transcription-quantitative PCR (RT‒qPCR) and western blotting (WB) were used to confirm the hypothesis of network pharmacology.
    Results: Five different chemotypes of anthraquinone derivatives (1-10), including six new compounds (3, 6-10), were identified from Streptomyces sp. SYP-A7185. Compounds 1-6 and 9 displayed moderate to strong cytotoxicity on five human cancer cell lines (A549, HepG2, MCF-7, MDA-MD-231, and MGC-803). Moreover, matrix metalloproteinase-2 (MMP2) were predicted as a potential antitumor target of metabolites 1-6 and 9 by comprehensive network pharmacology analysis. Later, BLI assays revealed strong intermolecular interactions between MMP2 and antitumor metabolites, and molecular docking results showed the interaction of metabolites 1-6 and 9 with MMP2 was dependent on the crucial amino acid residues of LEU-83, ALA-84, LEU-117, HIS-131, PRO-135, GLY-136, ALA-140, PRO-141, TYR-143, and THR-144. These results implied that metabolites (1-6 and 9) might inhibit cancer cell migration besides cancer cell proliferation. After that, the cell wound healing assay showed that the cell migration processes were also inhibited after the treatments of compounds 1 and 3 in A549 and MCF-7 cells. In addition, the RT‒qPCR and WB results demonstrated that the gene expression levels of MMP2 were decreased after the treatment with compounds 1 and 3 in A549 and MCF-7 cells. Besides, compound 2 displayed moderate antioxidant activity (EC
    Conclusions: Anthraquinone metabolites, from rhizosphere soil Streptomyces sp. of P. notoginseng, possess antitumor, antioxidant, antibacterial, and antiglycosidase activities. Moreover, metabolites 1 and 3 inhibit cancer cells migration through downregulating MMP2.
    MeSH term(s) Humans ; Panax notoginseng/chemistry ; Soil/chemistry ; Matrix Metalloproteinase 2 ; Streptomyces/chemistry ; Rhizosphere ; Antioxidants/pharmacology ; Molecular Docking Simulation ; alpha-Glucosidases ; MCF-7 Cells ; Cell Movement ; Anthraquinones/pharmacology ; Anti-Bacterial Agents ; Neoplasms/drug therapy
    Chemical Substances Soil ; Matrix Metalloproteinase 2 (EC 3.4.24.24) ; Antioxidants ; alpha-Glucosidases (EC 3.2.1.20) ; Anthraquinones ; Anti-Bacterial Agents ; MMP2 protein, human (EC 3.4.24.24)
    Language English
    Publishing date 2023-04-21
    Publishing country Ireland
    Document type Journal Article
    ZDB-ID 134511-4
    ISSN 1872-7573 ; 0378-8741
    ISSN (online) 1872-7573
    ISSN 0378-8741
    DOI 10.1016/j.jep.2023.116457
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Edaphovirga cremea gen. nov., sp. nov., isolated from the rhizospheric soil of Codonopsis clematidea.

    Xue, Jin-Yan / Zhang, Meng-Yue / Zhang, Yu / Cheng, Juan / Liu, Li-Cheng / Wu, Ying-Ying / Zhang, Tian-Yuan / Zhang, Yi-Xuan

    Journal of microbiology (Seoul, Korea)

    2019  Volume 57, Issue 5, Page(s) 337–342

    Abstract: A Gram-negative, facultatively anaerobic, non-motile, nonspore- forming, coccoid or rod-shaped and creamy-pigmented bacterium, designated SYP- ... ...

    Abstract A Gram-negative, facultatively anaerobic, non-motile, nonspore- forming, coccoid or rod-shaped and creamy-pigmented bacterium, designated SYP-B2100
    MeSH term(s) Bacterial Typing Techniques ; Base Composition/genetics ; Codonopsis/microbiology ; DNA, Bacterial/genetics ; Enterobacteriaceae/classification ; Enterobacteriaceae/genetics ; Enterobacteriaceae/isolation & purification ; Enterobacteriaceae/metabolism ; Fatty Acids/analysis ; Phospholipids/analysis ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Rhizosphere ; Soil Microbiology
    Chemical Substances DNA, Bacterial ; Fatty Acids ; Phospholipids ; RNA, Ribosomal, 16S
    Language English
    Publishing date 2019-02-26
    Publishing country Korea (South)
    Document type Journal Article
    ZDB-ID 2012399-1
    ISSN 1976-3794 ; 1225-8873
    ISSN (online) 1976-3794
    ISSN 1225-8873
    DOI 10.1007/s12275-019-8408-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Edaphovirga cremea gen. nov., sp. nov., isolated from the rhizospheric soil of Codonopsis clematidea

    Xue, Jin-Yan / Cheng, Juan / Liu, Li-Cheng / Wu, Ying-Ying / Zhang, Meng-Yue / Zhang, Tian-Yuan / Zhang, Yi-Xuan / Zhang, Yu

    journal of microbiology. 2019 May, v. 57, no. 5

    2019  

    Abstract: A Gram-negative, facultatively anaerobic, non-motile, nonspore- forming, coccoid or rod-shaped and creamy-pigmented bacterium, designated SYP-B2100T, was isolated from the rhizospheric soil of Codonopsis clematidea in the Xinjiang Uygur Autonomous Region, ...

    Abstract A Gram-negative, facultatively anaerobic, non-motile, nonspore- forming, coccoid or rod-shaped and creamy-pigmented bacterium, designated SYP-B2100T, was isolated from the rhizospheric soil of Codonopsis clematidea in the Xinjiang Uygur Autonomous Region, China. The optimal growth occurred at 28°C, pH 5.0, in the absence of NaCl. The cells tested positive in catalase and methyl red tests but negative in oxidase, urease, gelatinase, milk coagulation, and peptonisation, H2S production, nitrate reduction, and Voges-Proskauer tests. The major isoprenoid quinone was ubiquinone-8 (Q-8). The major cellular fatty acids were C16:0 and summed feature 8. The polar lipids consisted of diphosphatidylglycerol, phosphatidylethanolamine, and phosphatidylglycerol. The 16S rRNA gene sequence of strain SYP-B2100T was the most similar to that of Rahnella inusitata DSM 30078T (96.9%) within the family Enterobacteriaceae. The genomic DNA G + C content of strain SYP-B2100T was 50.3 mol%. The combined data from the phylogenetic, morphological, physiological, biochemical, and chemotaxonomic analyses presented in this study support the conclusion that strain SYP-B2100T represents a novel species of a new genus, for which the name Edaphovirga cremea gen. nov., sp. nov. is proposed; the type strain is SYPB2100T (= CGMCC 1.5857T = DSM 105170T = KCTC 62024T).
    Keywords bacteria ; catalase ; chemotaxonomy ; coagulation ; Codonopsis clematidea ; DNA ; fatty acids ; hydrogen sulfide ; isoprenoids ; milk ; new genus ; nitrate reduction ; nucleotide sequences ; pH ; phosphatidylethanolamines ; phylogeny ; quinones ; Rahnella ; ribosomal RNA ; sodium chloride ; soil ; urease ; China
    Language English
    Dates of publication 2019-05
    Size p. 337-342.
    Publishing place The Microbiological Society of Korea
    Document type Article
    ZDB-ID 2012399-1
    ISSN 1225-8873
    ISSN 1225-8873
    DOI 10.1007/s12275-019-8408-0
    Database NAL-Catalogue (AGRICOLA)

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