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  1. Article ; Online: Abnormalities of the Halogen Bonds in the Complexes between Y 2 CTe (Y = H, F, CH 3 ) and XF (X = F, Cl, Br, I)

    Ya-Qian Wang / Rui-Jing Wang / Qing-Zhong Li / Zhi-Wu Yu

    Molecules, Vol 27, Iss 8523, p

    2022  Volume 8523

    Abstract: In this work, the hydrogen bonds and halogen bonds in the complexes between Y 2 CTe (Y = H, F, CH 3 ) and XF (X = F, Cl, Br, I) have been studied by quantum chemical calculations. We found three interesting abnormalities regarding the interactions. ... ...

    Abstract In this work, the hydrogen bonds and halogen bonds in the complexes between Y 2 CTe (Y = H, F, CH 3 ) and XF (X = F, Cl, Br, I) have been studied by quantum chemical calculations. We found three interesting abnormalities regarding the interactions. Firstly, the strength of halogen bonds increases in the order of IF < BrF < ClF < F 2 . Secondly, the halogen bonds formed by F 2 are very strong, with an interaction energy in the range between −199.8 and −233.1 kJ/mol. Thirdly, all the halogen bonds are stronger than the hydrogen bonds in the systems we examined. All these results are against the general understanding of halogen bonds. These apparent abnormal properties are reconciled with the high polarizability of the Te atom and the strong inducing effect of F on the Te atom of Y 2 CTe. These findings provide a new perspective on halogen bonds. Additionally, we also proposed bonding distance-based methods to compare the strength of halogen/hydrogen bonds formed between different donor atoms and the same acceptor atom.
    Keywords halogen bond ; hydrogen bond ; abnormality ; competition ; AIM ; NBO ; Organic chemistry ; QD241-441
    Subject code 540
    Language English
    Publishing date 2022-12-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Revisiting the Origin of Nanopore Current Blockage for Volume Difference Sensing at the Atomic Level

    Meng-Yin Li / Yi-Lun Ying / Jie Yu / Shao-Chuang Liu / Ya-Qian Wang / Shuang Li / Yi-Tao Long

    JACS Au, Vol 1, Iss 7, Pp 967-

    2021  Volume 976

    Keywords Chemistry ; QD1-999
    Language English
    Publishing date 2021-05-01T00:00:00Z
    Publisher American Chemical Society
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Single Molecule Study of Hydrogen Bond Interactions Between Single Oligonucleotide and Aerolysin Sensing Interface

    Meng-Yin Li / Ya-Qian Wang / Yao Lu / Yi-Lun Ying / Yi-Tao Long

    Frontiers in Chemistry, Vol

    2019  Volume 7

    Abstract: The aerolysin nanopore displays a charming sensing capability for single oligonucleotide discrimination. When reading from the electrochemical signal, stronger interaction between the aerolysin nanopore and oligonucleotide represent prolonged duration ... ...

    Abstract The aerolysin nanopore displays a charming sensing capability for single oligonucleotide discrimination. When reading from the electrochemical signal, stronger interaction between the aerolysin nanopore and oligonucleotide represent prolonged duration time, thereby amplifying the hidden but intrinsic signal thus improving the sensitivity. In order to further understand and optimize the performance of the aerolysin nanopore, we focus on the investigation of the hydrogen bond interaction between nanopore, and analytes. Taking advantage of site-direct mutagenesis, single residue is replaced. According to whole protein sequence screening, the region near K238 is one of the key sensing regions. Such a positively charged amino acid is then mutagenized into cysteine and tyrosine denoted as K238C, and K238Y. As (dA)4 traverses the pores, K238C dramatically produces a six times longer duration time than the WT aerolysin nanopore at the voltage of +120 mV. However, K238Y shortens the dwell time which suggests the acceleration of the translocation causing poor sensitivity. Referring to our previous findings in K238G, and K238F, our results suggest that the hydrogen bond does not dominate the dynamic translocation process, but enhances the interaction between pores and analytes confined in such nanopore space. These insights give detailed information for the rational design of the sensing mechanism of the aerolysin nanopore, thereby providing further understanding for the weak interactions between biomolecules and the confined space for nanopore sensing.
    Keywords single-molecule interface ; oligonucleotide ; nanopore ; hydrogen bond ; nanoconfinement ; Chemistry ; QD1-999
    Language English
    Publishing date 2019-07-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Mapping the sensing spots of aerolysin for single oligonucleotides analysis

    Chan Cao / Meng-Yin Li / Nuria Cirauqui / Ya-Qian Wang / Matteo Dal Peraro / He Tian / Yi-Tao Long

    Nature Communications, Vol 9, Iss 1, Pp 1-

    2018  Volume 9

    Abstract: Nanopores are an emerging powerful single-molecule method of DNA sequencing. Here the authors map the structure of aerolysin for use as a nanopore and show detection of modified and unmodified nucleobases. ...

    Abstract Nanopores are an emerging powerful single-molecule method of DNA sequencing. Here the authors map the structure of aerolysin for use as a nanopore and show detection of modified and unmodified nucleobases.
    Keywords Science ; Q
    Language English
    Publishing date 2018-07-01T00:00:00Z
    Publisher Nature Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Mapping the sensing spots of aerolysin for single oligonucleotides analysis

    Chan Cao / Meng-Yin Li / Nuria Cirauqui / Ya-Qian Wang / Matteo Dal Peraro / He Tian / Yi-Tao Long

    Nature Communications, Vol 9, Iss 1, Pp 1-

    2018  Volume 9

    Abstract: Nanopores are an emerging powerful single-molecule method of DNA sequencing. Here the authors map the structure of aerolysin for use as a nanopore and show detection of modified and unmodified nucleobases. ...

    Abstract Nanopores are an emerging powerful single-molecule method of DNA sequencing. Here the authors map the structure of aerolysin for use as a nanopore and show detection of modified and unmodified nucleobases.
    Keywords Science ; Q
    Language English
    Publishing date 2018-07-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Direct Quantification of Damaged Nucleotides in Oligonucleotides Using an Aerolysin Single Molecule Interface

    Jiajun Wang / Meng-Yin Li / Jie Yang / Ya-Qian Wang / Xue-Yuan Wu / Jin Huang / Yi-Lun Ying / Yi-Tao Long

    ACS Central Science, Vol 6, Iss 1, Pp 76-

    2020  Volume 82

    Keywords Chemistry ; QD1-999
    Language English
    Publishing date 2020-01-01T00:00:00Z
    Publisher American Chemical Society
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article: Hexagonal nanoplates of high-quality γ-gallium oxide: controlled synthesis and good heterogeneous catalytic performance for thiophenes

    Yang, Zun / Le Xin Song / Ya Qian Wang / Mao Mao Ruan / Yue Teng / Juan Xia / Jun Yang / Shan Shan Chen / Fang Wang

    Journal of materials chemistry. 2018 Feb. 14, v. 6, no. 7

    2018  

    Abstract: Hexagonal nanoplates of high-quality γ-gallium oxide (γ-Ga₂O₃) were successfully synthesized by using a competitive and cooperative interaction model based on multiple equilibria, including a precipitation interaction, a coordination interaction and two ... ...

    Abstract Hexagonal nanoplates of high-quality γ-gallium oxide (γ-Ga₂O₃) were successfully synthesized by using a competitive and cooperative interaction model based on multiple equilibria, including a precipitation interaction, a coordination interaction and two binding interactions. The synthetic method is straightforward and affords the desired product in very high yield. It is important to note that only a combination of the coordination interaction and binding interactions can contribute to the formation of hexagonal nanoplates by effectively suppressing the generation of gallium oxide hydroxide and directly limiting the assembly of the nanoplates into microflowers. This model is significant because it allows us to understand how the disassembly process of nanostructures is related to the synergistic mechanism of multiple interactions. Furthermore, the γ-Ga₂O₃ hexagonal nanoplates exhibit good heterogeneous catalytic performance for the oxidation reaction of thiophenes. A possible mechanism was proposed for the catalytic process, and this may open up a new perspective in the study of oxidative desulfurization.
    Keywords catalytic activity ; desulfurization ; gallium ; models ; nanomaterials ; oxidation ; thiophenes
    Language English
    Dates of publication 2018-0214
    Size p. 2914-2921.
    Publishing place The Royal Society of Chemistry
    Document type Article
    ZDB-ID 2702232-8
    ISSN 2050-7496 ; 2050-7488
    ISSN (online) 2050-7496
    ISSN 2050-7488
    DOI 10.1039/c7ta09913d
    Database NAL-Catalogue (AGRICOLA)

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