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  1. Article ; Online: Development of a Dual Mode UCNPs-MB Biosensor in Combination with PCR for Sensitive Detection of

    Han, Lu / Chen, Min / Song, Yaqi / Yan, Zhongyu / Zhou, Dandan / Pan, Leiqing / Tu, Kang

    Biosensors

    2023  Volume 13, Issue 4

    Abstract: In recent years, the high prevalence ... ...

    Abstract In recent years, the high prevalence of
    MeSH term(s) Animals ; Methylene Blue ; Salmonella ; Nanoparticles ; Polymerase Chain Reaction/methods ; Biosensing Techniques/methods ; Limit of Detection
    Chemical Substances Methylene Blue (T42P99266K)
    Language English
    Publishing date 2023-04-13
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2662125-3
    ISSN 2079-6374 ; 2079-6374
    ISSN (online) 2079-6374
    ISSN 2079-6374
    DOI 10.3390/bios13040475
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Correction: Chen et al. Upconversion Fluorescence Nanoprobe-Based FRET for the Sensitive Determination of

    Chen, Min / Yan, Zhongyu / Han, Lu / Zhou, Dandan / Wang, Yan / Pan, Leiqing / Tu, Kang

    Biosensors

    2023  Volume 13, Issue 7

    Abstract: In the original publication, there is a mistake in Figure 1: A duplication error between 1B and 1C, which occurred due to the similarity of the images of the three nanoparticles [ ... ]. ...

    Abstract In the original publication, there is a mistake in Figure 1: A duplication error between 1B and 1C, which occurred due to the similarity of the images of the three nanoparticles [...].
    Language English
    Publishing date 2023-07-07
    Publishing country Switzerland
    Document type Published Erratum
    ZDB-ID 2662125-3
    ISSN 2079-6374 ; 2079-6374
    ISSN (online) 2079-6374
    ISSN 2079-6374
    DOI 10.3390/bios13070713
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: In vivo mutagenicity evaluation of the soil fumigant 1,3-dichloropropene.

    Badding, Melissa / Gollapudi, B Bhaskar / Gehen, Sean / Yan, Zhongyu June

    Mutagenesis

    2021  Volume 35, Issue 5, Page(s) 437–443

    Abstract: 1,3-Dichloropropene (1,3-D; CAS No. 542-75-6) is a soil fumigant used for the control of nematodes in agriculture. There is an extensive database on the genotoxicity of 1,3-D and many of the published studies are confounded by the presence of mutagenic ... ...

    Abstract 1,3-Dichloropropene (1,3-D; CAS No. 542-75-6) is a soil fumigant used for the control of nematodes in agriculture. There is an extensive database on the genotoxicity of 1,3-D and many of the published studies are confounded by the presence of mutagenic stabilisers in the test substance. Mixed results were obtained in the in vitro assays, often due to the purity of the 1,3-D sample tested. In order to get further clarity, the mutagenic potential of 1,3-D was investigated in vivo in the transgenic Big Blue rodent models. Inhalation exposure of 150 ppm 1,3-D (×2.5 tumourigenic dose) to transgenic male B6C3F1 mice did not induce lacI mutations in either the lung (tumour target tissue) or liver. Similarly, dietary administration of 1,3-D up to 50 mg/kg/day to transgenic male Fischer 344 rats did not increase the cII mutant frequency in either the liver (tumour target) or kidney. These results, along with other available in vivo data, including the absence of DNA adducts and clastogenic/aneugenic potential, support the conclusion that 1,3-D is efficiently detoxified in vivo and, as such, does not pose a mutagenic hazard or risk.
    MeSH term(s) Allyl Compounds/pharmacology ; Allyl Compounds/toxicity ; Animals ; DNA Adducts/drug effects ; Dose-Response Relationship, Drug ; Gene Expression Regulation/drug effects ; Humans ; Hydrocarbons, Chlorinated/pharmacology ; Hydrocarbons, Chlorinated/toxicity ; Lac Repressors/genetics ; Mice ; Mice, Transgenic ; Mutagenesis/drug effects ; Mutagenicity Tests ; Mutagens/pharmacology ; Mutagens/toxicity ; Mutation/drug effects ; Pesticides/adverse effects ; Pesticides/pharmacology ; Rats ; Rats, Inbred F344
    Chemical Substances Allyl Compounds ; DNA Adducts ; Hydrocarbons, Chlorinated ; Lac Repressors ; Mutagens ; Pesticides ; 1,3-dichloro-1-propene (9H780918D0)
    Language English
    Publishing date 2021-01-29
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 632903-2
    ISSN 1464-3804 ; 0267-8357
    ISSN (online) 1464-3804
    ISSN 0267-8357
    DOI 10.1093/mutage/geaa015
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  4. Article ; Online: Upconversion Fluorescence Nanoprobe-Based FRET for the Sensitive Determination of

    Chen, Min / Yan, Zhongyu / Han, Lu / Zhou, Dandan / Wang, Yan / Pan, Leiqing / Tu, Kang

    Biosensors

    2022  Volume 12, Issue 10

    Abstract: ... ...

    Abstract Shigella
    MeSH term(s) Fluorescence Resonance Energy Transfer ; Gold/chemistry ; Aptamers, Nucleotide/chemistry ; Metal Nanoparticles/chemistry ; Nanoparticles/chemistry ; Shigella ; Limit of Detection
    Chemical Substances Gold (7440-57-5) ; Aptamers, Nucleotide
    Language English
    Publishing date 2022-09-27
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2662125-3
    ISSN 2079-6374 ; 2079-6374
    ISSN (online) 2079-6374
    ISSN 2079-6374
    DOI 10.3390/bios12100795
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  5. Article ; Online: A retrospective study on EU harmonised classifications for carcinogenicity to guide future research.

    Terry, Claire / Yan, Zhongyu / Corvaro, Marco / Gehen, Sean C

    Regulatory toxicology and pharmacology : RTP

    2020  Volume 119, Page(s) 104800

    Abstract: Under European Regulation (EC) No 1272/2008 on the classification, labelling and packaging of substances and mixtures (CLP), chemicals can be classified as carcinogenic if they are considered to induce tumours, increase tumour incidence and/or malignancy, ...

    Abstract Under European Regulation (EC) No 1272/2008 on the classification, labelling and packaging of substances and mixtures (CLP), chemicals can be classified as carcinogenic if they are considered to induce tumours, increase tumour incidence and/or malignancy, or shorten the time to tumour occurrence. Cancer classifications are divided into different hazard categories: Carc. 1A (known human carcinogen), Carc. 1B (presumed human carcinogen), Carc. 2 (suspected human carcinogen), and chemicals not classified for carcinogenicity. Selecting which classification is appropriate can be challenging, as judgements need to be made both on the existing hazard data and on its relevance to humans. One aspect to be considered in defining human relevance is a chemical's mode of action (MoA); the series of necessary key events that lead from an exposure to the adverse effect (in this case, tumours). This work aims to identify and discuss some of the features that have led ECHA's Committee for Risk Assessment (RAC) to decide upon harmonised cancer classifications for chemicals, and to prioritise future research on MoA and/or human relevance. RAC bases its decisions on cancer classification on both the weight-of-evidence (WoE) and strength-of-evidence (SoE) of this particular activity. Multiple factors contribute, including the species in which tumours are seen, and the relevance of the MoA to human health.
    MeSH term(s) Animals ; Carcinogens/classification ; Carcinogens/toxicity ; European Union ; Hazardous Substances/classification ; Hazardous Substances/toxicity ; Humans ; Neoplasms/chemically induced ; Retrospective Studies ; Risk Assessment
    Chemical Substances Carcinogens ; Hazardous Substances
    Language English
    Publishing date 2020-10-28
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 604672-1
    ISSN 1096-0295 ; 0273-2300
    ISSN (online) 1096-0295
    ISSN 0273-2300
    DOI 10.1016/j.yrtph.2020.104800
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: The relationship between chemical-induced kidney weight increases and kidney histopathology in rats.

    Craig, Evisabel A / Yan, Zhongyu / Zhao, Q Jay

    Journal of applied toxicology : JAT

    2015  Volume 35, Issue 7, Page(s) 729–736

    Abstract: The kidney is a major site of chemical excretion, which results in its propensity to exhibit chemically-induced toxicological effects at a higher rate than most other organs. Although the kidneys are often weighed in animal toxicity studies, the manner ... ...

    Abstract The kidney is a major site of chemical excretion, which results in its propensity to exhibit chemically-induced toxicological effects at a higher rate than most other organs. Although the kidneys are often weighed in animal toxicity studies, the manner in which these kidney weight measurements are interpreted and the value of this information in predicting renal damage remains controversial. In this study we sought to determine whether a relationship exists between chemically-induced kidney weight changes and renal histopathological alterations. We also examined the relative utility of absolute and relative (kidney-to-body weight ratio) kidney weight in the prediction of renal toxicity. For this, data extracted from oral chemical exposure studies in rats performed by the National Toxicology Program were qualitatively and quantitatively evaluated. Our analysis showed a statistically significant correlation between absolute, but not relative, kidney weight and renal histopathology in chemically-treated rats. This positive correlation between absolute kidney weight and histopathology was observed even with compounds that statistically decreased terminal body weight. Also, changes in absolute kidney weight, which occurred at subchronic exposures, were able to predict the presence or absence of kidney histopathology at both subchronic and chronic exposures. Furthermore, most increases in absolute kidney weight reaching statistical significance (irrespective of the magnitude of change) were found to be relevant for the prediction of histopathological changes. Hence, our findings demonstrate that the evaluation of absolute kidney weight is a useful method for identifying potential renal toxicants.
    MeSH term(s) Animals ; Female ; Kidney/drug effects ; Kidney/pathology ; Male ; Organ Size/drug effects ; Rats ; Toxicity Tests
    Language English
    Publishing date 2015-07
    Publishing country England
    Document type Journal Article
    ZDB-ID 604625-3
    ISSN 1099-1263 ; 0260-437X
    ISSN (online) 1099-1263
    ISSN 0260-437X
    DOI 10.1002/jat.3036
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  7. Article: Preliminary evidence of the association between DNAm and orbital volumetry in GO.

    Hu, Ya-Fen / Hua, Lin / Tuo, Xiu / Shi, Ting-Ting / Yang, Yi-Lin / Liu, Yun-Fu / Yan, Zhong-Yu / Xin, Zhong

    Endocrine connections

    2020  

    Abstract: Background: The pathogenesis underlying the alterations of orbital architecture in Graves' orbitopathy (GO) is not yet fully understood. The present study aimed to investigate the association of DNA methylation in peripheral blood and orbital volumetry ... ...

    Abstract Background: The pathogenesis underlying the alterations of orbital architecture in Graves' orbitopathy (GO) is not yet fully understood. The present study aimed to investigate the association of DNA methylation in peripheral blood and orbital volumetry in Chinese patients with GO.
    Methods: A total of 35 GO subjects (70 orbits) were subjected to computed tomography (CT) scan. The total cross-sectional area of the extraocular muscles (orbital muscles, OM), total orbit area (TOA), and the exophthalmometry were measured, and OM/TOA ratio was calculated. Targeted bisulfite sequencing was performed on seven candidate genes.
    Results: No significant correlation was established between the DNA methylation levels of these genes and exophthalmometry. The MBP methylation level was found to be correlated with OM/TOA ratio (P<0.05). Multiple linear regression analysis on parameters, including age, sex, TRAb, duration of GO, and DNA methylation levels of seven genes with OM/TOA ratio confirmed that MBP and OM/TOA ratio had a significant correlation (P<0.05). The partial least squares analysis showed that the top three genes with the highest loadings were MBP, BOLL, and BECN1, and OM/TOA ratio affected the DNA methylation block than exophthalmometry.
    Conclusions: This study provided preliminary evidence that MBP is a potential gene associated with OM enlargement in GO patients according to the combination of DNA methylation sequencing and orbital CT measurement.
    Language English
    Publishing date 2020-06-01
    Publishing country England
    Document type Journal Article
    ZDB-ID 2668428-7
    ISSN 2049-3614
    ISSN 2049-3614
    DOI 10.1530/EC-20-0147
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  8. Article ; Online: Inflammatory myofibroblastic tumor: an entity of CT and MR imaging to differentiate from malignant tumors of the sinonasal cavity.

    Yan, Zhongyu / Wang, Yongzhe / Zhang, Zhengyu

    Journal of computer assisted tomography

    2014  Volume 38, Issue 1, Page(s) 14–19

    Abstract: Objective: Inflammatory myofibroblastic tumor (IMT) is chronic inflammatory lesions of unknown origins. The preoperative diagnosis for tumors in the sinonasal cavity is difficult to distinguish between IMT and aggressive malignancy in most cases. The ... ...

    Abstract Objective: Inflammatory myofibroblastic tumor (IMT) is chronic inflammatory lesions of unknown origins. The preoperative diagnosis for tumors in the sinonasal cavity is difficult to distinguish between IMT and aggressive malignancy in most cases. The purpose of this study was to evaluate the imaging features of IMT distinguishing the 2 types of tumors.
    Methods: Computed tomography and magnetic resonance imaging were identified retrospectively with IMT in 14 cases and with aggressive malignancy in 38 cases in the sinonasal cavity proven by pathology. Imaging findings were evaluated, including the configuration, extent, margin, calcification, bone involvement, T1WI and T2WI signal intensity, and degree of enhancement.
    Results: There was a significant difference between IMT and aggressive malignancy regarding the configuration, extension, calcification, bone change, signal intensity and homogeneous on T2-weighted imaging, and degree of enhancement (P < 0.05).
    Conclusions: Inflammatory myofibroblastic tumor and aggressive malignancy have some different imaging features that could be helpful in the differentiation between the lesions. Bone erosion with sclerosis, calcification when present, typically homogenous and never hyperintense of T2 appearance, and mild enhancement played an important role in differentiating sinonasal IMT from malignancies.
    MeSH term(s) Adolescent ; Adult ; Aged ; Child ; Child, Preschool ; Contrast Media ; Diagnosis, Differential ; Female ; Gadolinium DTPA ; Humans ; Image Interpretation, Computer-Assisted ; Infant ; Magnetic Resonance Imaging/methods ; Male ; Neoplasms, Muscle Tissue/diagnosis ; Neoplasms, Muscle Tissue/diagnostic imaging ; Paranasal Sinus Neoplasms/diagnosis ; Paranasal Sinus Neoplasms/diagnostic imaging ; Retrospective Studies ; Tomography, X-Ray Computed/methods
    Chemical Substances Contrast Media ; Gadolinium DTPA (K2I13DR72L)
    Language English
    Publishing date 2014-01
    Publishing country United States
    Document type Journal Article
    ZDB-ID 80392-3
    ISSN 1532-3145 ; 0363-8715
    ISSN (online) 1532-3145
    ISSN 0363-8715
    DOI 10.1097/RCT.0b013e3182a7764c
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  9. Article ; Online: Weight of evidence analysis of the tumorigenic potential of 1,3-dichloropropene supports a threshold-based risk assessment.

    Yan, Zhongyu June / Bartels, Michael / Gollapudi, Bhaskar / Driver, Jeffrey / Himmelstein, Matthew / Gehen, Sean / Juberg, Daland / van Wesenbeeck, Ian / Terry, Claire / Rasoulpour, Reza

    Critical reviews in toxicology

    2021  Volume 50, Issue 10, Page(s) 836–860

    Abstract: 1,3-Dichloropropene (1,3-D; CAS #542-75-6) is a fumigant used for preplant treatment of soil to control parasitic nematodes and manage soil borne diseases for numerous fruit, vegetable, field and tree and vine crops across diverse global agricultural ... ...

    Abstract 1,3-Dichloropropene (1,3-D; CAS #542-75-6) is a fumigant used for preplant treatment of soil to control parasitic nematodes and manage soil borne diseases for numerous fruit, vegetable, field and tree and vine crops across diverse global agricultural areas. In the USA, 1,3-D has historically been classified by the U.S. EPA as likely to be carcinogenic to humans via both oral and inhalation routes. This classification for the oral route was primarily based upon increases in multiple tumor types observed in National Toxicology Program (NTP) cancer bioassays in rats and mice, while the classification for the inhalation route was based upon increased benign bronchioloalveolar adenomas in a mouse study conducted by The Dow Chemical Company. Based on U.S. EPA standard risk assessment methodologies, a low-dose linear extrapolation approach has been used to estimate risks to humans. Furthermore, genotoxicity associated with 1,3-D was historically considered a potential mode of action (MOA) for its tumorigenicity. New information is available and additional studies have been conducted that reveal a different picture of the tumorigenic potential of 1,3-D. These data and information include: (1) initial cancer studies by the NTP were conducted on an antiquated form of 1,3-D which contained a known mutagen/carcinogen, epichlorohydrin, as a stabilizer while current 1,3-D fumigants use epoxidized soybean oil (ESO) as the stabilizer; (2) results from two additional oral rodent cancer bioassays conducted on the modern form of 1,3-D became available and these two studies reveal a lack of carcinogenicity; (3) a newly conducted Big Blue study in F344 rats via the oral route further confirms that 1,3-D is not an
    MeSH term(s) Allyl Compounds/toxicity ; Animals ; Body Weight ; Carcinogenicity Tests ; Carcinogens/toxicity ; Humans ; Hydrocarbons, Chlorinated/toxicity ; Mice ; Mutagens ; Pesticides/toxicity ; Rats ; Rats, Inbred F344 ; Risk Assessment
    Chemical Substances Allyl Compounds ; Carcinogens ; Hydrocarbons, Chlorinated ; Mutagens ; Pesticides ; 1,3-dichloro-1-propene (9H780918D0)
    Language English
    Publishing date 2021-02-02
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1097071-x
    ISSN 1547-6898 ; 1040-8444
    ISSN (online) 1547-6898
    ISSN 1040-8444
    DOI 10.1080/10408444.2020.1845119
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  10. Article: Variants in Adjacent Oxytocin/Vasopressin Gene Region and Associations with ASD Diagnosis and Other Autism Related Endophenotypes.

    Francis, Sunday M / Kistner-Griffin, Emily / Yan, Zhongyu / Guter, Stephen / Cook, Edwin H / Jacob, Suma

    Frontiers in neuroscience

    2016  Volume 10, Page(s) 195

    Abstract: Background: There has been increasing interest in oxytocin (peptide: OT, gene: OXT) as a treatment pathway for neurodevelopmental disorders such as Autism Spectrum Disorder (ASD). Neurodevelopmental disorders affect functional, social, and intellectual ... ...

    Abstract Background: There has been increasing interest in oxytocin (peptide: OT, gene: OXT) as a treatment pathway for neurodevelopmental disorders such as Autism Spectrum Disorder (ASD). Neurodevelopmental disorders affect functional, social, and intellectual abilities. With advances in molecular biology, research has connected multiple gene regions to the clinical presentation of ASD. Studies have also shown that the neuropeptide hormones OT and arginine vasopressin (AVP) influence mammalian social and territorial behaviors and may have treatment potential for neurodevelopmental disorders. Published data examining molecular and phenotypic variation in ASD, such as cognitive abilities, are limited. Since most studies have focused on the receptors in the OT-AVP system, we investigated genetic variation within peptide genes for association with phenotypic ASD features that help identify subgroups within the spectrum.
    Methods: In this study, TDT analysis was carried out utilizing FBAT in 207 probands (156 trios) and a European Ancestry (EA) subsample (108 trios).The evolutionarily related and adjacent genes of OXT and AVP were studied for associations between the tagged single nucleotide polymorphisms and ASD diagnosis, social abilities, restrictive and repetitive behaviors, and IQ for cognitive abilities. Additionally, relationships with whole blood serotonin (WB5HT) were explored because of the developmental relationships connecting plasma levels of OT and WB5HT within ASD.
    Results: RESULTS indicate significant association between OXT rs6084258 (p = 0.001) and ASD. Associations with several endophenotypes were also noted: OXT rs6133010 was associated with IQ (full scale IQ, p = 0.008; nonverbal IQ, p = 0.010, verbal IQ, p = 0.006); and OXT rs4813625 and OXT rs877172 were associated with WB5HT levels (EA, p = 0.027 and p = 0.033, respectively). Additionally, we measured plasma OT (pOT) levels in a subsample (N = 54). RESULTS show the three polymorphisms, OXT rs6084258, OXT rs11697250, and OXT rs877172, have significant association with pOT (EA, p = 0.011, p = 0.010, and p = 0.002, respectively).
    Conclusions: These findings suggest that SNPs near OXT and AVP are associated with diagnosis of ASD, social behaviors, restricted and repetitive behaviors, IQ, pOT, and WB5HT. Future studies need to replicate these findings and examine gene-interactions in other neurodevelopmental disorders. Mechanisms of action may influence early social and cognitive development that may or may not be limited to ASD diagnosis.
    Language English
    Publishing date 2016-05-12
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2411902-7
    ISSN 1662-453X ; 1662-4548
    ISSN (online) 1662-453X
    ISSN 1662-4548
    DOI 10.3389/fnins.2016.00195
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