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  1. Article ; Online: Natural variants of human SARM1 cause both intrinsic and dominant loss-of-function influencing axon survival.

    Ademi, Mirlinda / Yang, Xiuna / Coleman, Michael P / Gilley, Jonathan

    Scientific reports

    2022  Volume 12, Issue 1, Page(s) 13846

    Abstract: SARM1 is a central executioner of programmed axon death, and this role requires intrinsic NAD(P)ase or related enzyme activity. A complete absence of SARM1 robustly blocks axon degeneration in mice, but even a partial depletion confers meaningful ... ...

    Abstract SARM1 is a central executioner of programmed axon death, and this role requires intrinsic NAD(P)ase or related enzyme activity. A complete absence of SARM1 robustly blocks axon degeneration in mice, but even a partial depletion confers meaningful protection. Since axon loss contributes substantially to the onset and progression of multiple neurodegenerative disorders, lower inherent SARM1 activity is expected to reduce disease susceptibility in some situations. We, therefore, investigated whether there are naturally occurring SARM1 alleles within the human population that encode SARM1 variants with loss-of-function. Out of the 18 natural SARM1 coding variants we selected as candidates, we found that 10 display loss-of-function in three complimentary assays: they fail to robustly deplete NAD in transfected HEK 293T cells; they lack constitutive and NMN-induced NADase activity; and they fail to promote axon degeneration in primary neuronal cultures. Two of these variants are also able to block axon degeneration in primary culture neurons in the presence of endogenous, wild-type SARM1, indicative of dominant loss-of-function. These results demonstrate that SARM1 loss-of-function variants occur naturally in the human population, and we propose that carriers of these alleles will have different degrees of reduced susceptibility to various neurological conditions.
    MeSH term(s) Armadillo Domain Proteins/genetics ; Axons ; Cytoskeletal Proteins/genetics ; HEK293 Cells ; Humans ; NAD ; Neurons
    Chemical Substances Armadillo Domain Proteins ; Cytoskeletal Proteins ; SARM1 protein, human ; NAD (0U46U6E8UK)
    Language English
    Publishing date 2022-08-16
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-022-18052-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Full-length TprK of Treponema pallidum subsp. pallidum in lipid nanodiscs is a monomeric porin

    Lian, Tingting / Zhang, Bing / Giacani, Lorenzo / Kou, Caixia / Yang, Xiuna / Zhang, Ruili / Wang, Qianqiu

    Enzyme and microbial technology. 2022 Jan., v. 153

    2022  

    Abstract: TprK is a key virulence factor of Treponema pallidum subsp. pallidum (T. pallidum) due to its ability to undergo intra-strain antigenic variation through gene conversion. This mechanism can generate millions of tprK gene and protein variants to allow ... ...

    Abstract TprK is a key virulence factor of Treponema pallidum subsp. pallidum (T. pallidum) due to its ability to undergo intra-strain antigenic variation through gene conversion. This mechanism can generate millions of tprK gene and protein variants to allow immune evasion and pathogen persistence during infection. In silico structural modeling supports that TprK is an outer membrane β-barrel with porin function and with several surface-exposed loops, seven of which corresponding to the variable regions. No definitive structural of functional data, however, exist for this protein aside from its role in immune evasion. Studies to elucidate TprK biological function as a porin, are hindered by the evidence that TprK is not abundant on T. pallidum outer membrane, and by the fragility of T. pallidum envelope. To gain insight onto TprK structure and possible function as a porin, we used an Escherichia coli - based expression system that yielded highly pure full-length TprK without any intermediate denaturation step, and proceeded to reconstitute it in detergents and lipid nanodiscs. Visualization of TprK in nanodiscs using negative staining electron microscopy supported that TprK is a monomeric porin in an artificial lipid environment mimicking T. pallidum membrane. Our work provided evidence that TprK is a possible porin transporter of T. pallidum, a biological function compatible with its structural models. These results bring us closer to a comprehensive understanding of the function of this important virulence factor in syphilis pathogenesis and T. pallidum biology.
    Keywords Escherichia coli ; Treponema pallidum ; antigenic variation ; computer simulation ; denaturation ; electron microscopy ; enzymes ; gene conversion ; genes ; immune evasion ; lipids ; pathogen survival ; pathogenesis ; porins ; virulence
    Language English
    Dates of publication 2022-01
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 423729-8
    ISSN 1879-0909 ; 0141-0229
    ISSN (online) 1879-0909
    ISSN 0141-0229
    DOI 10.1016/j.enzmictec.2021.109897
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: Molecular mechanism of ensitrelvir inhibiting SARS-CoV-2 main protease and its variants.

    Lin, Mengmeng / Zeng, Xudong / Duan, Yinkai / Yang, Zinan / Ma, Yuanyuan / Yang, Haitao / Yang, Xiuna / Liu, Xiang

    Communications biology

    2023  Volume 6, Issue 1, Page(s) 694

    Abstract: SARS-CoV-2 poses an unprecedented threat to the world as the causative agent of the COVID-19 pandemic. Among a handful of therapeutics developed for the prevention and treatment of SARS-CoV-2 infection, ensitrelvir is the first noncovalent and nonpeptide ...

    Abstract SARS-CoV-2 poses an unprecedented threat to the world as the causative agent of the COVID-19 pandemic. Among a handful of therapeutics developed for the prevention and treatment of SARS-CoV-2 infection, ensitrelvir is the first noncovalent and nonpeptide oral inhibitor targeting the main protease (M
    MeSH term(s) Humans ; SARS-CoV-2 ; COVID-19 ; Pandemics
    Chemical Substances 3C-like proteinase, SARS-CoV-2 (EC 3.4.22.-) ; ensitrelvir (PX665RAA3H)
    Language English
    Publishing date 2023-07-05
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 2399-3642
    ISSN (online) 2399-3642
    DOI 10.1038/s42003-023-05071-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Book ; Article ; Online: Inequality of Opportunity in Household Income, China 2002-2018

    Yang, Xiuna / Gustafsson, Björn Anders / Sicular, Terry

    2021  

    Abstract: This study contributes to the literature on inequality of opportunity (IOp) in China by covering a longer and more recent span of time, employing better measures of given characteristics, and analyzing IOp for household income per capita with comparisons ...

    Abstract This study contributes to the literature on inequality of opportunity (IOp) in China by covering a longer and more recent span of time, employing better measures of given characteristics, and analyzing IOp for household income per capita with comparisons to individual income. Furthermore, we study how IOp differs between the rural- and urban-born, and how IOp changes across birth cohorts and with age. We use 2002, 2013 and 2018 data from the Chinese Household Income Study and focus on income inequality among working-age persons. Between the years of study, IOp in China declined, especially between 2013 and 2018. In 2002 the large contributors to IOp were region, hukou type at birth, and parents' characteristics. In 2018 the contributions of region, hukou type at birth and parents' occupation had decreased, but that of parents' education had increased. We find that IOp is larger among those born in rural than urban China. Furthermore, IOP's contribution to total inequality within each birth cohort is highest earlier in individuals' work lives and declines with age. IOp is higher for older than younger birth cohorts, reflecting that younger cohorts have benefited from increased opportunities associated with China's reforms and opening up.
    Keywords ddc:330 ; D31 ; D63 ; J62 ; Gini ; income inequality ; inequality of opportunity ; China
    Subject code 338
    Language English
    Publisher Bonn: Institute of Labor Economics (IZA)
    Publishing country de
    Document type Book ; Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article: Earnings among nine ethnic minorities and the Han majority in China's cities

    Gustafsson, Björn / Yang, Xiuna

    Journal of the Asia Pacific economy Vol. 22, No. 3 , p. 525-546

    2017  Volume 22, Issue 3, Page(s) 525–546

    Author's details Björn Gustafsson and Xiuna Yang
    Keywords Earnings ; ethnic minorities ; Uighur ; Tibetan ; Korean
    Language English
    Publisher Routledge
    Publishing place London
    Document type Article
    ZDB-ID 1355204-1 ; 2018960-6
    ISSN 1469-9648 ; 1354-7860
    ISSN (online) 1469-9648
    ISSN 1354-7860
    Database ECONomics Information System

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  6. Article ; Online: An oligopeptide permease, OppABCD, requires an iron-sulfur cluster domain for functionality.

    Yang, Xiaolin / Hu, Tianyu / Liang, Jingxi / Xiong, Zhiqi / Lin, Zhenli / Zhao, Yao / Zhou, Xiaoting / Gao, Yan / Sun, Shan / Yang, Xiuna / Guddat, Luke W / Yang, Haitao / Rao, Zihe / Zhang, Bing

    Nature structural & molecular biology

    2024  

    Abstract: Oligopeptide permease, OppABCD, belongs to the type I ABC transporter family. Its role is to import oligopeptides into bacteria for nutrient uptake and to modulate the host immune response. OppABCD consists of a cluster C substrate-binding protein (SBP), ...

    Abstract Oligopeptide permease, OppABCD, belongs to the type I ABC transporter family. Its role is to import oligopeptides into bacteria for nutrient uptake and to modulate the host immune response. OppABCD consists of a cluster C substrate-binding protein (SBP), OppA, membrane-spanning OppB and OppC subunits, and an ATPase, OppD, that contains two nucleotide-binding domains (NBDs). Here, using cryo-electron microscopy, we determined the high-resolution structures of Mycobacterium tuberculosis OppABCD in the resting state, oligopeptide-bound pre-translocation state, AMPPNP-bound pre-catalytic intermediate state and ATP-bound catalytic intermediate state. The structures show an assembly of a cluster C SBP with its ABC translocator and a functionally required [4Fe-4S] cluster-binding domain in OppD. Moreover, the ATP-bound OppABCD structure has an outward-occluded conformation, although no substrate was observed in the transmembrane cavity. Here, we reveal an oligopeptide recognition and translocation mechanism of OppABCD, which provides a perspective on how this and other type I ABC importers facilitate bulk substrate transfer across the lipid bilayer.
    Language English
    Publishing date 2024-03-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2126708-X
    ISSN 1545-9985 ; 1545-9993
    ISSN (online) 1545-9985
    ISSN 1545-9993
    DOI 10.1038/s41594-024-01256-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Molecular basis for substrate transport of

    Hu, Tianyu / Yang, Xiaolin / Zhu, Yuanchen / Liu, Fengjiang / Yang, Xiuna / Xiong, Zhiqi / Liang, Jingxi / Lin, Zhenli / Ran, Yuting / Guddat, Luke W / Rao, Zihe / Zhang, Bing

    Science advances

    2024  Volume 10, Issue 12, Page(s) eadk8521

    Abstract: The type I adenosine 5'-triphosphate (ATP)-binding cassette (ABC) transporter DppABCD is believed to be responsible for the import of exogenous heme as an iron source into the cytoplasm of the human ... ...

    Abstract The type I adenosine 5'-triphosphate (ATP)-binding cassette (ABC) transporter DppABCD is believed to be responsible for the import of exogenous heme as an iron source into the cytoplasm of the human pathogen
    MeSH term(s) Humans ; Mycobacterium tuberculosis/metabolism ; Cryoelectron Microscopy ; Bacterial Proteins/metabolism ; ATP-Binding Cassette Transporters/chemistry ; Adenosine Triphosphate/metabolism
    Chemical Substances Bacterial Proteins ; ATP-Binding Cassette Transporters ; Adenosine Triphosphate (8L70Q75FXE)
    Language English
    Publishing date 2024-03-20
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2810933-8
    ISSN 2375-2548 ; 2375-2548
    ISSN (online) 2375-2548
    ISSN 2375-2548
    DOI 10.1126/sciadv.adk8521
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Book ; Online: Earnings among nine ethnic minorities and the Han majority in China's cities

    Gustafsson, Björn / Yang, Xiuna

    (Discussion paper / IZA ; no. 10230)

    2016  

    Abstract: This paper asks if economic growth and steps towards a market economy have affected earnings gaps between the Han and nine large urban ethnic minorities: Zhuang, Hui, Manchurian, Tujia, Uighur, Miao, Tibetan, Mongol and Korean. It also asks how earnings ... ...

    Author's details Björn Gustafsson, Xiuna Yang
    Series title Discussion paper / IZA ; no. 10230
    Abstract This paper asks if economic growth and steps towards a market economy have affected earnings gaps between the Han and nine large urban ethnic minorities: Zhuang, Hui, Manchurian, Tujia, Uighur, Miao, Tibetan, Mongol and Korean. It also asks how earnings premiums and earnings penalties have changed for the nine ethnic minorities. For the analysis we use a subsample of the 2005 China's Inter-Census Survey. We find examples of three different changes over time in earnings premiums and earnings penalties: One ethnic minority for whom the development has been more favourable than for the Han majority; a second category in which development has been similar; and a third category for which development has been unfavourable. We conclude from the analysis that it can be misleading to infer the experience of one ethnic minority from that of another.
    Keywords earnings ; ethnic minorities ; Uighur ; Tibetan ; Korean
    Language English
    Size 1 Online-Ressource (circa 35 Seiten), Illustrationen
    Publisher IZA
    Publishing place Bonn, Germany
    Document type Book ; Online
    Database ECONomics Information System

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  9. Article ; Online: Full-length TprK of Treponema pallidum subsp. pallidum in lipid nanodiscs is a monomeric porin.

    Lian, Tingting / Zhang, Bing / Giacani, Lorenzo / Kou, Caixia / Yang, Xiuna / Zhang, Ruili / Wang, Qianqiu

    Enzyme and microbial technology

    2021  Volume 153, Page(s) 109897

    Abstract: TprK is a key virulence factor of Treponema pallidum subsp. pallidum (T. pallidum) due to its ability to undergo intra-strain antigenic variation through gene conversion. This mechanism can generate millions of tprK gene and protein variants to allow ... ...

    Abstract TprK is a key virulence factor of Treponema pallidum subsp. pallidum (T. pallidum) due to its ability to undergo intra-strain antigenic variation through gene conversion. This mechanism can generate millions of tprK gene and protein variants to allow immune evasion and pathogen persistence during infection. In silico structural modeling supports that TprK is an outer membrane β-barrel with porin function and with several surface-exposed loops, seven of which corresponding to the variable regions. No definitive structural of functional data, however, exist for this protein aside from its role in immune evasion. Studies to elucidate TprK biological function as a porin, are hindered by the evidence that TprK is not abundant on T. pallidum outer membrane, and by the fragility of T. pallidum envelope. To gain insight onto TprK structure and possible function as a porin, we used an Escherichia coli - based expression system that yielded highly pure full-length TprK without any intermediate denaturation step, and proceeded to reconstitute it in detergents and lipid nanodiscs. Visualization of TprK in nanodiscs using negative staining electron microscopy supported that TprK is a monomeric porin in an artificial lipid environment mimicking T. pallidum membrane. Our work provided evidence that TprK is a possible porin transporter of T. pallidum, a biological function compatible with its structural models. These results bring us closer to a comprehensive understanding of the function of this important virulence factor in syphilis pathogenesis and T. pallidum biology.
    MeSH term(s) Bacterial Outer Membrane Proteins/genetics ; Escherichia coli/genetics ; Lipids ; Porins/genetics ; Treponema/genetics
    Chemical Substances Bacterial Outer Membrane Proteins ; Lipids ; Porins ; Tpr protein, Treponema
    Language English
    Publishing date 2021-08-25
    Publishing country United States
    Document type Journal Article
    ZDB-ID 423729-8
    ISSN 1879-0909 ; 0141-0229
    ISSN (online) 1879-0909
    ISSN 0141-0229
    DOI 10.1016/j.enzmictec.2021.109897
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Book ; Online: Are China's ethnic minorities less likely to move?

    Gustafsson, Björn Anders / Yang, Xiuna

    (Discussion paper series / Forschungsinstitut zur Zukunft der Arbeit ; 9018)

    2015  

    Abstract: This study uses China's Inter-Census Survey 2005 to analyse the extent migration behaviour among 14 large ethnic minority groups and the Han majority. Results show that the probability to migrate to all types of destinations varies by province of origin, ...

    Author's details Björn Anders Gustafsson; Xiuna Yang
    Series title Discussion paper series / Forschungsinstitut zur Zukunft der Arbeit ; 9018
    Abstract This study uses China's Inter-Census Survey 2005 to analyse the extent migration behaviour among 14 large ethnic minority groups and the Han majority. Results show that the probability to migrate to all types of destinations varies by province of origin, decreases by age, and in most cases, by expected income at the origin. Furthermore the probability to migrate is found to typically increase by length of education and decrease for females by the number of children. In most cases investigated, a minority ethnicity reduces migration probabilities for people registered in rural China. This is particularly the case for persons belonging to the Uyghur and Tibetan ethnic groups, but also for the Mongolian, Bai, Yao and Tujia groups. In contrast, Korean and Hui have a higher probability of migration than the majority. For people with an urban hukou there are fewer examples that minority ethnicity affects probability to migrate.
    Keywords China ; ethnic minorities ; Uighur ; Tibetan ; Korean ; Hui
    Language English
    Size Online-Ressource (38 S.), graph. Darst.
    Publisher IZA
    Publishing place Bonn
    Document type Book ; Online
    Database ECONomics Information System

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