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Article: Multi-Scale Object Detection with the Pixel Attention Mechanism in a Complex Background

Xiao, Jinsheng / Guo, Haowen / Yao, Yuntao / Zhang, Shuhao / Zhou, Jian / Jiang, Zhijun

Remote Sensing. 2022 Aug. 16, v. 14, no. 16

2022

Abstract: The object detection task is usually affected by complex backgrounds. In this paper, a new image object detection method is proposed, which can perform multi-feature selection on multi-scale feature maps. By this method, a bidirectional multi-scale ... ...

Abstract	The object detection task is usually affected by complex backgrounds. In this paper, a new image object detection method is proposed, which can perform multi-feature selection on multi-scale feature maps. By this method, a bidirectional multi-scale feature fusion network was designed to fuse semantic features and shallow features to improve the detection effects of small objects in complex backgrounds. When the shallow features are transferred to the top layer, a bottom-up path is added to reduce the number of network layers experienced by the feature fusion network, reducing the loss of shallow features. In addition, a multi-feature selection module based on the attention mechanism is used to minimize the interference of useless information in subsequent classification and regression, allowing the network to adaptively focus on appropriate information for classification or regression to improve detection accuracy. Because the traditional five-parameter regression method has severe boundary problems when predicting objects with large aspect ratios, the proposed network treats angle prediction as a classification task. The experimental results on the DOTA dataset, the self-made DOTA-GF dataset and the HRSC 2016 dataset show that, compared with several popular object detection algorithms, the proposed method has certain advantages in detection accuracy.
Keywords	data collection ; prediction ; regression analysis
Language	English
Dates of publication	2022-0816
Publishing place	Multidisciplinary Digital Publishing Institute
Document type	Article
ZDB-ID	2513863-7
ISSN	2072-4292
ISSN	2072-4292
DOI	10.3390/rs14163969
Database	NAL-Catalogue (AGRICOLA)

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Article: Incubating green turtle (Chelonia mydas) eggs at constant temperatures: Hatching success, hatchling morphology and post-hatch growth.

Yao, Yun-Tao / Du, Yu / Pan, Jia-Xin / Lin, Chi-Xian / Ji, Xiang / You, Wen-Hui

Journal of thermal biology

2022 Volume 104, Page(s) 103182

Abstract: Past studies applying constant-temperature incubation of eggs have involved all species of sea turtles, but rarely can we find a single one incubating eggs at three or more temperatures. Here, we incubated green turtle (Chelonia mydas) eggs from Ganquan ... ...

Abstract	Past studies applying constant-temperature incubation of eggs have involved all species of sea turtles, but rarely can we find a single one incubating eggs at three or more temperatures. Here, we incubated green turtle (Chelonia mydas) eggs from Ganquan Island, South China Sea, at five constant temperatures (26, 28, 30, 32 and 34 °C) to determine hatching success, incubation length and hatchling phenotype at each test temperature and temperatures optimal for embryonic development. Temperature affected hatching success, incubation length and all seven examined hatchlings traits, and clutch origin affected three (head length, fore-flipper length and hind-flipper length) of the seven. Hatching success was lowest at 34 °C and none of hatchlings hatched at this temperature was normal and survived over one week. The rate of embryonic development and the rate of post-hatch growth both were lowest at 26 °C. Given that low survival and growth rates can translate into reduced individual fitness, we conclude that both 26 °C and 34 °C are unsuitable for incubation of C. mydas eggs. Post-hatch growth was fastest in hatchlings incubated at 30 °C, and eggs of C. mydas incubated at temperatures around 30 °C are more likely to produce mixed sexes. Accordingly, we conclude that temperatures within the range from 28 °C to 32 °C are generally optimal for embryonic development of C. mydas.
MeSH term(s)	Animals ; China ; Eggs ; Embryonic Development ; Female ; Temperature ; Turtles/embryology
Language	English
Publishing date	2022-01-05
Publishing country	England
Document type	Journal Article
ZDB-ID	1498364-3
ISSN	1879-0992 ; 0306-4565
ISSN (online)	1879-0992
ISSN	0306-4565
DOI	10.1016/j.jtherbio.2021.103182
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Article ; Online: Incubating green turtle (Chelonia mydas) eggs at constant temperatures: Hatching success, hatchling morphology and post-hatch growth

Yao, Yun-Tao / Du, Yu / Pan, Jia-Xin / Lin, Chi-Xian / Ji, Xiang / You, Wen-Hui

Journal of Thermal Biology. 2022 Feb., v. 104 p.103182-

2022

Abstract	Past studies applying constant-temperature incubation of eggs have involved all species of sea turtles, but rarely can we find a single one incubating eggs at three or more temperatures. Here, we incubated green turtle (Chelonia mydas) eggs from Ganquan Island, South China Sea, at five constant temperatures (26, 28, 30, 32 and 34 °C) to determine hatching success, incubation length and hatchling phenotype at each test temperature and temperatures optimal for embryonic development. Temperature affected hatching success, incubation length and all seven examined hatchlings traits, and clutch origin affected three (head length, fore-flipper length and hind-flipper length) of the seven. Hatching success was lowest at 34 °C and none of hatchlings hatched at this temperature was normal and survived over one week. The rate of embryonic development and the rate of post-hatch growth both were lowest at 26 °C. Given that low survival and growth rates can translate into reduced individual fitness, we conclude that both 26 °C and 34 °C are unsuitable for incubation of C. mydas eggs. Post-hatch growth was fastest in hatchlings incubated at 30 °C, and eggs of C. mydas incubated at temperatures around 30 °C are more likely to produce mixed sexes. Accordingly, we conclude that temperatures within the range from 28 °C to 32 °C are generally optimal for embryonic development of C. mydas.
Keywords	Chelonia mydas ; embryogenesis ; head ; phenotype ; temperature ; South China Sea ; Embryonic thermosensitivity ; Ganquan island ; Hatching ; Hatchling phenotype ; Incubation ; Sea turtle
Language	English
Dates of publication	2022-02
Publishing place	Elsevier Ltd
Document type	Article ; Online
ZDB-ID	1498364-3
ISSN	1879-0992 ; 0306-4565
ISSN (online)	1879-0992
ISSN	0306-4565
DOI	10.1016/j.jtherbio.2021.103182
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Article ; Online: Identification of prognostic stemness-related genes in kidney renal papillary cell carcinoma.

Liu, Yifan / Yao, Yuntao / Zhang, Yu / Xu, Chengdang / Yang, Tianyue / Qu, Mingyu / Lu, Bingnan / Song, Xu / Pan, Xiuwu / Zhou, Wang / Cui, Xingang

BMC medical genomics

2024 Volume 17, Issue 1, Page(s) 121

Abstract: Background: Kidney renal papillary cell carcinoma (KIRP) is the second most prevalent malignant cancer originating from the renal epithelium. Nowadays, cancer stem cells and stemness-related genes (SRGs) are revealed to play important roles in the ... ...

Abstract	Background: Kidney renal papillary cell carcinoma (KIRP) is the second most prevalent malignant cancer originating from the renal epithelium. Nowadays, cancer stem cells and stemness-related genes (SRGs) are revealed to play important roles in the carcinogenesis and metastasis of various tumors. Consequently, we aim to investigate the underlying mechanisms of SRGs in KIRP. Methods: RNA-seq profiles of 141 KIRP samples were downloaded from the TCGA database, based on which we calculated the mRNA expression-based stemness index (mRNAsi). Next, we selected the differentially expressed genes (DEGs) between low- and high-mRNAsi groups. Then, we utilized weighted gene correlation network analysis (WGCNA) and univariate Cox analysis to identify prognostic SRGs. Afterwards, SRGs were included in the multivariate Cox regression analysis to establish a prognostic model. In addition, a regulatory network was constructed by Pearson correlation analysis, incorporating key genes, upstream transcription factors (TFs), and downstream signaling pathways. Finally, we used Connectivity map analysis to identify the potential inhibitors. Results: In total, 1124 genes were characterized as DEGs between low- and high-RNAsi groups. Based on six prognostic SRGs (CCKBR, GPR50, GDNF, SPOCK3, KC877982.1, and MYO15A), a prediction model was established with an area under curve of 0.861. Furthermore, among the TFs, genes, and signaling pathways that had significant correlations, the CBX2-ASPH-Notch signaling pathway was the most significantly correlated. Finally, resveratrol might be a potential inhibitor for KIRP. Conclusions: We suggested that CBX2 could regulate ASPH through activation of the Notch signaling pathway, which might be correlated with the carcinogenesis, development, and unfavorable prognosis of KIRP.
MeSH term(s)	Humans ; Prognosis ; Kidney Neoplasms/genetics ; Kidney Neoplasms/pathology ; Carcinoma, Renal Cell/genetics ; Carcinoma, Renal Cell/pathology ; Neoplastic Stem Cells/metabolism ; Neoplastic Stem Cells/pathology ; Gene Expression Regulation, Neoplastic ; Gene Regulatory Networks ; Male ; Biomarkers, Tumor/genetics ; Female ; Gene Expression Profiling ; Middle Aged ; Signal Transduction/genetics
Chemical Substances	Biomarkers, Tumor
Language	English
Publishing date	2024-05-03
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2411865-5
ISSN	1755-8794 ; 1755-8794
ISSN (online)	1755-8794
ISSN	1755-8794
DOI	10.1186/s12920-024-01870-2
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article: Pan-cancer analysis reveals signal transducer and activator of transcription (STAT) gene family as biomarkers for prognostic prediction and therapeutic guidance.

Cheng, Mei / Liu, Yifan / Guo, Yangkun / Li, Man / Xian, Shuyuan / Qin, Hengwei / Yang, Yiting / Qian, Weijin / Tang, Jieling / Lu, Yuwei / Yao, Yuntao / Zhang, Mengyi / Jin, Minghao / Xu, Long / Huang, Runzhi / Xu, Dayuan

Frontiers in genetics

2023 Volume 14, Page(s) 1120500

Abstract: Background: ...

Abstract	Background:
Language	English
Publishing date	2023-03-09
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2606823-0
ISSN	1664-8021
ISSN	1664-8021
DOI	10.3389/fgene.2023.1120500
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: The complete mitochondrial genome of Eremias multiocellata (Squamata: Lacertidae).

Tong, Qing-Lin / Yao, Yun-Tao / Lin, Long-Hui / Ji, Xiang

Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis

2016 Volume 27, Issue 3, Page(s) 1654–1655

Abstract: In this paper, the complete mitochondrial genome of Eremias multiocellata (Squamata: Lacertidae) is reported, which is a circular molecule of 19,385 bp in size. The nucleotides composition are 31.2% A, 28.9% T, 27.1% C and 13.4% G. The genome consists of ...

Abstract	In this paper, the complete mitochondrial genome of Eremias multiocellata (Squamata: Lacertidae) is reported, which is a circular molecule of 19,385 bp in size. The nucleotides composition are 31.2% A, 28.9% T, 27.1% C and 13.4% G. The genome consists of 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNA genes and 1 putative control region.
Language	English
Publishing date	2016-05
Publishing country	England
Document type	Journal Article
ISSN	2470-1408
ISSN (online)	2470-1408
DOI	10.3109/19401736.2014.958714
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Article ; Online: The complete mitochondrial genome of Eremias vermiculata (Squamata: Lacertidae).

Tong, Qing-Lin / Yao, Yun-Tao / Lin, Long-Hui / Ji, Xiang

Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis

2016 Volume 27, Issue 2, Page(s) 1447–1448

Abstract: In this paper, we report the complete mitochondrial genome of Eremias vermiculata (Squamata: Lacertidae), which is a circular molecule of 19,914 bp in size and consists of 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and 1 putative ... ...

Abstract	In this paper, we report the complete mitochondrial genome of Eremias vermiculata (Squamata: Lacertidae), which is a circular molecule of 19,914 bp in size and consists of 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and 1 putative control region. The A + T content of overall base of the composition of H-strand is 59.8% (T: 28.9%, C: 27.2%, A: 30.9%, G: 13.0%). All of the results provide powerful data to further study of the molecular systematics, species identification and conservation genetics.
MeSH term(s)	Animals ; Base Composition ; Genome Size ; Genome, Mitochondrial ; Lizards/genetics ; Mitochondria/genetics ; Sequence Analysis, DNA/methods
Language	English
Publishing date	2016
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ISSN	2470-1408
ISSN (online)	2470-1408
DOI	10.3109/19401736.2014.953086
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Article ; Online: Sequencing technology as a major impetus in the advancement of studies into rheumatism: A bibliometric study.

Huang, Runzhi / Tang, Jieling / Wang, Siqiao / Liu, Yifan / Zhang, Mengyi / Jin, Minghao / Qin, Hengwei / Qian, Weijin / Lu, Yuwei / Yang, Yiting / Lu, Bingnan / Yao, Yuntao / Yan, Penghui / Huang, Jie / Zhang, Wei / Lu, Jianyu / Gu, Minyi / Zhu, Yushu / Guo, Xinya /

Xian, Shuyuan / Liu, Xin / Huang, Zongqiang

Frontiers in immunology

2023 Volume 14, Page(s) 1067830

Abstract: Background: Rheumatism covers a wide range of diseases with complex clinical manifestations and places a tremendous burden on humans. For many years, our understanding of rheumatism was seriously hindered by technology constraints. However, the ... ...

Abstract	Background: Rheumatism covers a wide range of diseases with complex clinical manifestations and places a tremendous burden on humans. For many years, our understanding of rheumatism was seriously hindered by technology constraints. However, the increasing application and rapid advancement of sequencing technology in the past decades have enabled us to study rheumatism with greater accuracy and in more depth. Sequencing technology has made huge contributions to the field and is now an indispensable component and powerful tool in the study of rheumatism. Methods: Articles on sequencing and rheumatism, published from 1 January 2000 to 25 April 2022, were retrieved from the Web of Science™ (Clarivate™, Philadelphia, PA, USA) database. Bibliometrix, the open-source tool, was used for the analysis of publication years, countries, authors, sources, citations, keywords, and co-words. Results: The 1,374 articles retrieved came from 62 countries and 350 institutions, with a general increase in article numbers during the last 22 years. The leading countries in terms of publication numbers and active cooperation with other countries were the USA and China. The most prolific authors and most popular documents were identified to establish the historiography of the field. Popular and emerging research topics were assessed by keywords and co-occurrence analysis. Immunological and pathological process in rheumatism, classification, risks and susceptibility, and biomarkers for diagnosis were among the hottest themes for research. Conclusions: Sequencing technology has been widely applied in the study of rheumatism and propells research in the area of discovering novel biomarkers, related gene patterns and physiopathology. We suggest that further efforts be made to advance the study of genetic patterns related to rheumatic susceptibility, pathogenesis, classification and disease activity, and novel biomarkers.
MeSH term(s)	Humans ; Rheumatic Diseases ; Bibliometrics ; China ; Databases, Factual ; Technology
Language	English
Publishing date	2023-02-17
Publishing country	Switzerland
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2606827-8
ISSN	1664-3224 ; 1664-3224
ISSN (online)	1664-3224
ISSN	1664-3224
DOI	10.3389/fimmu.2023.1067830
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Tracing the evolving dynamics and research hotspots of microbiota and immune microenvironment from the past to the new era.

Huang, Runzhi / Yao, Yuntao / Tong, Xirui / Wang, Lei / Qian, Weijin / Lu, Jianyu / Zhang, Wei / Liu, Yifan / Wang, Siqiao / Xian, Shuyuan / Zhu, Yushu / Huang, Jie / Guo, Xinya / Gu, Minyi / Lv, Hanlin / Bi, Wenshuai / Meng, Chenwei / Chang, Zhengyan / Zhang, Jie /

Xu, Dayuan / Ji, Shizhao

Microbiology spectrum

2023 , Page(s) e0013523

Abstract: Gut microbiota can regulate many physiological processes within gastrointestinal tract and other distal sites. Dysbiosis may not only influence chronic diseases like the inflammatory bowel disease (IBD), metabolic disease, tumor and its therapeutic ... ...

Abstract	Gut microbiota can regulate many physiological processes within gastrointestinal tract and other distal sites. Dysbiosis may not only influence chronic diseases like the inflammatory bowel disease (IBD), metabolic disease, tumor and its therapeutic efficacy, but also deteriorate acute injuries. This article aims to review the documents in this field and summarize the research hotspots as well as developing processes. Gut microbiota and immune microenvironment-related documents from 1976 to 2022 were obtained from the Web of Science Core Collection database. Bibliometrics was used to assess the core authors and journals, most contributive countries and affiliations together with hotspots in this field and keyword co-occurrence analysis. Data were visualized to help comprehension. Nine hundred and twelve documents about gut microbiota and immune microenvironment were retrieved, and the annual publications increased gradually. The most productive author, country, and affiliation were "Zitvogel L," USA and "UNIV TEXAS MD ANDERSON CANC CTR," respectively. FRONTIERS IN IMMUNOLOGY, CANCERS, and INTERNATIONAL JOURNAL OF MOLECULAR SCIENCE were the periodicals with most publications. Keyword co-occurrence analysis identified three clusters, including gut microbiota, inflammation, and IBD. Combined with the visualized analysis of documents and keyword co-occurrence as well as literature reading, we recognized three key topics of gut microbiota: cancer and therapy; immunity, inflammation and IBD; acute injuries and metabolic diseases. This article revealed researches on gut microbiota and immune microenvironment were growing. More attention should be given to the latest hotspots like gut microbiota, inflammation, IBD, cancer and immunotherapy, acute traumas, and metabolic diseases.IMPORTANCEGut microbiota can regulate many physiological processes within gastrointestinal tract and other distal sites. Dysbiosis may not only influence chronic diseases like inflammatory bowel disease (IBD), metabolic disease, tumor and its therapeutic efficacy, but also deteriorate acute injuries. While the application of bibliometrics in the field of gut microbiota and immune microenvironment still remains blank, which focused more on the regulation of the gut microbiota on the immune microenvironment of different kinds of diseases. Here, we intended to review and summarize the presented documents in gut microbiota and immune microenvironment field by bibliometrics. And we revealed researches on gut microbiota and immune microenvironment were growing. More attention should be given to the latest hotspots like gut microbiota, inflammation, IBD, cancer and immunotherapy, acute traumas, and metabolic diseases.
Language	English
Publishing date	2023-09-28
Publishing country	United States
Document type	Journal Article
ZDB-ID	2807133-5
ISSN	2165-0497 ; 2165-0497
ISSN (online)	2165-0497
ISSN	2165-0497
DOI	10.1128/spectrum.00135-23
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Article ; Online: The complete mitochondrial genome of Acanthosaura lepidogaster (Squamata: Agamidae).

Yu, Xiu-Li / Du, Yu / Yao, Yun-Tao / Lin, Chi-Xian / Lin, Long-Hui

Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis

2017 Volume 28, Issue 2, Page(s) 182–184

Abstract: In this paper, we report the complete mitochondrial genome of Acanthosaura lepidogaster (Squamata, Agamidae), which is a circular molecule of 16 899 bp in size and consists of 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a control ... ...

Abstract	In this paper, we report the complete mitochondrial genome of Acanthosaura lepidogaster (Squamata, Agamidae), which is a circular molecule of 16 899 bp in size and consists of 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a control region. The overall base composition is as follows: T (22.8%), C (30.5%), A (32.3%), and G (14.4%). We constructed a phylogeny that included for 10 species of Leiolepidinae lizards and one outgroup Leiocephalus personatus constructed in BEAST, based on 15 mitochondrial genes (12S, 16S, ND1, ND2, COI, COII, ATP8, ATP6, COIII, ND3, ND4L, ND4, ND5, ND6, and cytochrome b). The topology of the phylogenetic tree is broadly similar to that mentioned by Pyron et al.
Language	English
Publishing date	2017-03
Publishing country	England
Document type	Journal Article
ISSN	2470-1408
ISSN (online)	2470-1408
DOI	10.3109/19401736.2015.1115500
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