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  1. Article: ARV-825 Showed Antitumor Activity against BRD4-NUT Fusion Protein by Targeting the BRD4.

    Yang, Liu / Jing, Yue / Xia, Xia / Yin, Xiushan

    Journal of oncology

    2023  Volume 2023, Page(s) 9904143

    Abstract: Objective: The bromodomain-containing 4 (BRD4) is a member of the bromodomain and extra terminal domain (BET) family, which is an important epigenetic reader. It is currently a promising oncology target. In some tumors, BET bromodomain inhibitors have ... ...

    Abstract Objective: The bromodomain-containing 4 (BRD4) is a member of the bromodomain and extra terminal domain (BET) family, which is an important epigenetic reader. It is currently a promising oncology target. In some tumors, BET bromodomain inhibitors have demonstrated promising results. Proteolysis-targeting methods (PROTAC), which rapidly and effectively degrade BRD4, have displayed considerable potential in the treatment of tumors in recent years. The purpose of this study is to examine the potential impact of BRD4 PROTAC compounds ARV-825 on oncogene BRD4-NUT fused protein in NUT carcinoma.
    Methods: The effectiveness of ARV-825 was evaluated at the cellular level using the cell counting kit 8 test, wound healing, cell transfection, western blotting analysis, and RNA sequencing. The effectiveness of ARV-825 was also examined in vivo using a xenograft model.
    Results: The BRD4-NUT fusion gene was overexpressed in 3T3 cells, and the pathogenic fusion gene was simulated. The results showed that the overexpression of BRD4-NUT could promote the proliferation and migration of 3T3 cells, but the expression of BRD4 protein was degraded after the addition of the novel cereblon-based PROTAC compound ARV-825 against BRD4, resulting in inhibition of BRD4-NUT 3T3 cell proliferation and migration. Further RNA-seq analysis showed that overexpression of BRD4-NUT was accompanied by increased expression of gene (e.g., Myc, E2F, TRAFs, Wnt, Gadd45g, and Sox6) with significantly enriched pathway (e.g., small cell lung cancer, NF-kappa B signaling pathway, and breast cancer), promoted cell cycle from G 1 phase to S phase, and increased cell proliferation and migration, activated the antiapoptosisi signal, led to abnormal cell growth, and ultimately led to tumorigenesis. The addition of ARV-825 effectively rescued this process and effectively inhibited cell vitality, proliferation, and migration. In vivo studies demonstrated that treatment with ARV-825 greatly suppressed tumor growth without causing harmful side effects and downregulated the BRD4-NUT expression level.
    Conclusion: Through the induction of BRD4 protein degradation, ARV-825 can successfully limit BRD4-NUT 3T3 cell proliferation in vitro and in vivo. These findings suggested that the BRD4 inhibitor ARV-825 would be an effective therapeutic strategy for treating NUT carcinoma that with the genetic feature of BRD4-NUT fusion event.
    Language English
    Publishing date 2023-12-14
    Publishing country Egypt
    Document type Journal Article
    ZDB-ID 2461349-6
    ISSN 1687-8469 ; 1687-8450
    ISSN (online) 1687-8469
    ISSN 1687-8450
    DOI 10.1155/2023/9904143
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Enhanced infection efficiency and cytotoxicity mediated by vpx-containing lentivirus in chimeric antigen receptor macrophage (CAR-M).

    Gao, Yun / Ju, Yue / Ren, Xiaomeng / Zhang, Luo / Yin, Xiushan

    Heliyon

    2023  Volume 9, Issue 12, Page(s) e21886

    Abstract: Genetically modified macrophage infusion has been proven to be a novel treatment for cancer. One of the most important processes in macrophage-based therapy is the efficient transfer of genes. HIV-1-derived lentiviruses were widely used as delivery ... ...

    Abstract Genetically modified macrophage infusion has been proven to be a novel treatment for cancer. One of the most important processes in macrophage-based therapy is the efficient transfer of genes. HIV-1-derived lentiviruses were widely used as delivery vectors in chimeric antigen receptor T and NK cell construction. While macrophages are relatively refractory to this lentiviral vector transduction as a result of the myeloid-specific restriction factor SAMHD1, which inhibited the virion cycle through exhausting the dNTPs pool and degradating RNAs. An efficient macrophage transduction strategy has been developed via packaging the HIV-2 accessory protein Vpx into the virion. Vpx counteracts SAMHD1 through CRL4 (DCAF1) E3 ubiquitin ligase mediated SAMHD1 degradation, yet the influence by the introduction of Vpx on macrophage has not been fully evaluated. Here, we constructed the chimeric lentiviral vector HIV-1-Vpx and systematically analyzed the infection efficiency of this vector in time-dependent manner. Our results showed that the simplified chimeric virus exhibited dramatically enhanced infection in human macrophages compared to normal lentivirus. Moreover, transcriptome sequencing was performed to evaluate the cellular status after chimeric virus infection. The sequencing results indicated that Vpx introduction promoted macrophage remodeling towards a proinflammatory phenotype, without affecting classic M1/M2 cell surface markers. Our results suggest that the Vpx-containing lentivirus could be used as an ideal tool for the generation of genetically engineered macrophages with high gene transfer efficiency and poised proinflammatory gene sets, especially for solid tumor treatment.
    Language English
    Publishing date 2023-11-19
    Publishing country England
    Document type Journal Article
    ZDB-ID 2835763-2
    ISSN 2405-8440
    ISSN 2405-8440
    DOI 10.1016/j.heliyon.2023.e21886
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Advance of Mesenchymal Stem Cells in Chronic End-Stage Liver Disease Control.

    Gao, Yun / Yin, Xiushan / Ren, Xiaomeng

    Stem cells international

    2022  Volume 2022, Page(s) 1526217

    Abstract: The chronic liver diseases will slowly develop into liver fibrosis, cirrhosis, and even liver cancer if no proper control is performed with high efficiency. Up to now, the most effective treatment for end-stage liver diseases is liver transplantation. ... ...

    Abstract The chronic liver diseases will slowly develop into liver fibrosis, cirrhosis, and even liver cancer if no proper control is performed with high efficiency. Up to now, the most effective treatment for end-stage liver diseases is liver transplantation. However, liver transplantation has the problems of donor deficiency, low matching rate, surgical complications, high cost, and immune rejection. These problems indicate that novel therapeutic strategies are urgently required. Mesenchymal stem cells (MSCs) are somatic stem cells with multidirectional differentiation potential and self-renewal ability. MSCs can secrete a large number of cytokines, chemokines, immunomodulatory molecules, and hepatotrophic factors, as well as produce extracellular vesicles. They alleviate liver diseases by differentiating to hepatocyte-like cells, immunomodulation, homing to the injured site, regulating cell ferroptosis, regulating cell autophagy, paracrine effects, and MSC-mitochondrial transfer. In this review, we focus on the main resources of MSCs, underlying therapeutic mechanisms, clinical applications, and efforts made to improve MSC-based cell therapy efficiency.
    Language English
    Publishing date 2022-10-07
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 2573856-2
    ISSN 1687-9678 ; 1687-966X
    ISSN (online) 1687-9678
    ISSN 1687-966X
    DOI 10.1155/2022/1526217
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Structural Basis for the Inhibition of SARS-CoV-2 M

    Zhao, Zhenyu / Zhu, Qinyao / Zhou, Xuelan / Li, Wenwen / Yin, Xiushan / Li, Jian

    Viruses

    2023  Volume 16, Issue 1

    Abstract: Preventing the spread of SARS-CoV-2 and its variants is crucial in the fight against COVID-19. Inhibition of the main protease ( ... ...

    Abstract Preventing the spread of SARS-CoV-2 and its variants is crucial in the fight against COVID-19. Inhibition of the main protease (M
    MeSH term(s) Lactams ; Leucine ; Naphthoquinones/pharmacology ; Nitriles ; SARS-CoV-2/drug effects ; SARS-CoV-2/genetics ; Coronavirus 3C Proteases/antagonists & inhibitors
    Chemical Substances Lactams ; Leucine (GMW67QNF9C) ; Naphthoquinones ; Nitriles ; shikonin (3IK6592UBW) ; Coronavirus 3C Proteases (EC 3.4.22.28) ; 3C-like proteinase, SARS-CoV-2 (EC 3.4.22.-)
    Language English
    Publishing date 2023-12-30
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v16010065
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Crystal structure of SARS-CoV 3C-like protease with baicalein.

    Feng, Jingwen / Li, Dongyang / Zhang, Jin / Yin, Xiushan / Li, Jian

    Biochemical and biophysical research communications

    2022  Volume 611, Page(s) 190–194

    Abstract: The 3C-like protease ( ... ...

    Abstract The 3C-like protease (M
    MeSH term(s) Antiviral Agents/chemistry ; Antiviral Agents/pharmacology ; Coronavirus 3C Proteases ; Flavanones ; Peptide Hydrolases ; Protease Inhibitors/chemistry ; SARS Virus ; SARS-CoV-2
    Chemical Substances Antiviral Agents ; Flavanones ; Protease Inhibitors ; baicalein (49QAH60606) ; Peptide Hydrolases (EC 3.4.-) ; Coronavirus 3C Proteases (EC 3.4.22.28)
    Language English
    Publishing date 2022-04-22
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 205723-2
    ISSN 1090-2104 ; 0006-291X ; 0006-291X
    ISSN (online) 1090-2104 ; 0006-291X
    ISSN 0006-291X
    DOI 10.1016/j.bbrc.2022.04.086
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Betaine regulates adipogenic and osteogenic differentiation of hAD-MSCs.

    Jing, Yue / Zhou, Jian / Guo, Fenghua / Yu, Lin / Ren, Xiaomeng / Yin, Xiushan

    Molecular biology reports

    2023  Volume 50, Issue 6, Page(s) 5081–5089

    Abstract: Background: With an ageing population, the incidence of bone loss and obesity are increasing. Numerous studies emphasized the multidirectional differentiation ability of mesenchymal stem cells (MSCs), and reported betaine modulated the osteogenic ... ...

    Abstract Background: With an ageing population, the incidence of bone loss and obesity are increasing. Numerous studies emphasized the multidirectional differentiation ability of mesenchymal stem cells (MSCs), and reported betaine modulated the osteogenic differentiation and adipogenic differentiation of MSCs in vitro. We wondered how betaine affected the differentiation of hAD-MSCs and hUC-MSCs.
    Methods and results: ALP staining and alizarin red S (ARS) staining were proved 10 mM betaine significantly increased the number of ALP-positive cells and plaque calcified extracellular matrices, accompanying by the up-regulation of OPN, Runx-2 and OCN. Oil red O staining demonstrated the number and size of lipid droplets were reduced, the expression of adipogenic master genes such as PPARγ, CEBPα and FASN were down-regulated simultaneously. For further investigating the mechanism of betaine on hAD-MSCs, RNA-seq was performed in none-differentiation medium. The Gene Ontology (GO) analysis showed fat cell differentiation and bone mineralization function terms were enriched, and KEGG showed PI3K-Akt signaling pathway, cytokine-cytokine receptor interaction and ECM-receptor interaction pathways were enriched in betaine treated hAD-MSCs, demonstrated betaine had a positive inducing effect on osteogenic of hAD-MSCs in the non-differentiation medium in vitro, which is opposite to the effect on adipogenic differentiation.
    Conclusions: Our study demonstrated that betaine promoted osteogenic and compromised adipogenic differentiation of hUC-MSCs and hAD-MSCs upon low concentration administration. PI3K-Akt signaling pathway, cytokine-cytokine receptor interaction and ECM-receptor interaction were significantly enriched under betaine-treated. We showed hAD-MSCs were more sensitive to betaine stimulation and have a better differentiation ability than hUC-MSCs. Our results contributed to the exploration of betaine as an aiding agent for MSCs therapy.
    MeSH term(s) Osteogenesis/genetics ; Betaine/pharmacology ; Betaine/metabolism ; Phosphatidylinositol 3-Kinases/metabolism ; Proto-Oncogene Proteins c-akt/metabolism ; Mesenchymal Stem Cells/metabolism ; Cytokines/metabolism ; Cell Differentiation ; Cells, Cultured
    Chemical Substances Betaine (3SCV180C9W) ; Phosphatidylinositol 3-Kinases (EC 2.7.1.-) ; Proto-Oncogene Proteins c-akt (EC 2.7.11.1) ; Cytokines
    Language English
    Publishing date 2023-04-26
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 186544-4
    ISSN 1573-4978 ; 0301-4851
    ISSN (online) 1573-4978
    ISSN 0301-4851
    DOI 10.1007/s11033-023-08404-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Correction: Betaine regulates adipogenic and osteogenic differentiation of hAD-MSCs.

    Jing, Yue / Zhou, Jian / Guo, Fenghua / Yu, Lin / Ren, Xiaomeng / Yin, Xiushan

    Molecular biology reports

    2023  Volume 50, Issue 11, Page(s) 9743

    Language English
    Publishing date 2023-09-11
    Publishing country Netherlands
    Document type Published Erratum
    ZDB-ID 186544-4
    ISSN 1573-4978 ; 0301-4851
    ISSN (online) 1573-4978
    ISSN 0301-4851
    DOI 10.1007/s11033-023-08779-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Crystal structure of SARS-CoV 3C-like protease with baicalein

    Feng, Jingwen / Li, Dongyang / Zhang, Jin / Yin, Xiushan / Li, Jian

    Biochemical and biophysical research communications. 2022 Apr. 19,

    2022  

    Abstract: The 3C-like protease (Mᵖʳᵒ, 3CLᵖʳᵒ) plays a key role in the replication process in coronaviruses (CoVs). The Mᵖʳᵒ is an essential enzyme mediates CoVs replication and is a promising target for development of antiviral drugs. Until now, baicalein has been ...

    Abstract The 3C-like protease (Mᵖʳᵒ, 3CLᵖʳᵒ) plays a key role in the replication process in coronaviruses (CoVs). The Mᵖʳᵒ is an essential enzyme mediates CoVs replication and is a promising target for development of antiviral drugs. Until now, baicalein has been shown the specific activity for SARS-CoV Mᵖʳᵒ in vitro experiments. In this study, we resolved the SARS-CoV Mᵖʳᵒ with baicalein by X-ray diffraction at 2.25 Å (PDB code7XAX), which provided a structural basis for the research and development of baicalein as an anti-CoVs drug.
    Keywords Orthocoronavirinae ; X-ray diffraction ; crystal structure ; drugs ; proteinases ; research and development
    Language English
    Dates of publication 2022-0419
    Publishing place Elsevier Inc.
    Document type Article
    Note Pre-press version
    ZDB-ID 205723-2
    ISSN 0006-291X ; 0006-291X
    ISSN (online) 0006-291X
    ISSN 0006-291X
    DOI 10.1016/j.bbrc.2022.04.086
    Database NAL-Catalogue (AGRICOLA)

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  9. Article: Colorimetric isothermal nucleic acid detection of SARS-CoV-2 with dye combination

    Wu, Shanshan / Liu, Xiyang / Ye, Shenglong / Liu, Jianmin / Zheng, Wei / Dong, Xue / Yin, Xiushan

    Heliyon. 2021 Apr., v. 7, no. 4

    2021  

    Abstract: RT-LAMP detection of SARS-CoV-2 has been demonstrated to be a valuable diagnostic method for the diagnosis of COVID-19¹,², which can rapidly screen carriers of the virus to effectively control the spread of the SARS-CoV-2. Here, we present a combination ... ...

    Abstract RT-LAMP detection of SARS-CoV-2 has been demonstrated to be a valuable diagnostic method for the diagnosis of COVID-19¹,², which can rapidly screen carriers of the virus to effectively control the spread of the SARS-CoV-2. Here, we present a combination of dyes for isothermal detection of SARS-CoV-2 as a commercial alternative, with expanded colorimetric spectrum. We compared them with commercial reagents and proved their suitability and sensitivity through clinical RNA samples. In addition, together with commercial single dye indicators, we believe the expanded color spectrum developed here as an indicator of rapid detection will promote the diagnosis of COVID-19.
    Keywords COVID-19 infection ; RNA ; Severe acute respiratory syndrome coronavirus 2 ; color ; colorimetry ; diagnostic techniques ; dyes ; rapid methods ; reverse transcription loop-mediated isothermal amplification ; viruses
    Language English
    Dates of publication 2021-04
    Publishing place Elsevier Ltd
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 2835763-2
    ISSN 2405-8440
    ISSN 2405-8440
    DOI 10.1016/j.heliyon.2021.e06886
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Structural basis of main proteases of HCoV-229E bound to inhibitor PF-07304814 and PF-07321332

    Zhou, Yanru / Wang, Weiwei / Zeng, Pei / Feng, Jingwen / Li, Dongyang / Jing, Yue / Zhang, Jin / Yin, Xiushan / Li, Jian / Ye, Heyang / Wang, Qisheng

    Biochemical and Biophysical Research Communications. 2023 May, v. 657 p.16-23

    2023  

    Abstract: PF-07321332 and PF-07304814, inhibitors against SARS-CoV-2 developed by Pfizer, exhibit broad-spectrum inhibitory activity against the main protease (Mᵖʳᵒ) from various coronaviruses. Structures of PF-07321332 or PF-07304814 in complex with Mᵖʳᵒs of ... ...

    Abstract PF-07321332 and PF-07304814, inhibitors against SARS-CoV-2 developed by Pfizer, exhibit broad-spectrum inhibitory activity against the main protease (Mᵖʳᵒ) from various coronaviruses. Structures of PF-07321332 or PF-07304814 in complex with Mᵖʳᵒs of various coronaviruses reveal their inhibitory mechanisms against different Mᵖʳᵒs. However, the structural information on the lower pathogenic coronavirus Mᵖʳᵒ with PF-07321332 or PF-07304814 is currently scarce, which hinders our comprehensive understanding of the inhibitory mechanisms of these two inhibitors. Meanwhile, given that some immunocompromised individuals are still affected by low pathogenic coronaviruses, we determined the structures of lower pathogenic coronavirus HCoV-229E Mᵖʳᵒ with PF-07321332 and PF-07304814, respectively, and analyzed and defined in detail the structural basis for the inhibition of HCoV-229E Mᵖʳᵒ by both inhibitors. Further, we compared the crystal structures of multiple coronavirus Mᵖʳᵒ complexes with PF-07321332 or PF-07304814 to illustrate the differences in the interaction of Mᵖʳᵒs, and found that the inhibition mechanism of lower pathogenic coronavirus Mᵖʳᵒ was more similar to that of moderately pathogenic coronaviruses. Our structural studies provide new insights into drug development for low pathogenic coronavirus Mᵖʳᵒ, and provide theoretical basis for further optimization of both inhibitors to contain potential future coronaviruses.
    Keywords Severe acute respiratory syndrome coronavirus 2 ; drug development ; proteinases ; research ; HCoV-229E ; Main protease ; Inhibitor ; PF-07304814 ; PF-07321332
    Language English
    Dates of publication 2023-05
    Size p. 16-23.
    Publishing place Elsevier Inc.
    Document type Article ; Online
    ZDB-ID 205723-2
    ISSN 0006-291X ; 0006-291X
    ISSN (online) 0006-291X
    ISSN 0006-291X
    DOI 10.1016/j.bbrc.2023.03.043
    Database NAL-Catalogue (AGRICOLA)

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