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Article ; Online: [Improving the position specificity of

Ma, Yadi / You, Cuiping / Zhang, Guoqiang / Li, Jianghua / DU, Guocheng

Sheng wu gong cheng xue bao = Chinese journal of biotechnology

2023 Volume 39, Issue 8, Page(s) 3481–3493

Abstract: Diacylglycerol (DAG) is an intermediate product in lipid metabolism and plays an important physiological role in human body. It is mainly prepared by hydrolyzing lipid with lipase. However, research on the detection method of 1, 2-diacylglycerol (1, 2- ... ...

Abstract	Diacylglycerol (DAG) is an intermediate product in lipid metabolism and plays an important physiological role in human body. It is mainly prepared by hydrolyzing lipid with lipase. However, research on the detection method of 1, 2-diacylglycerol (1, 2-DAG) and 1, 3-diacylglycerol (1, 3-DAG) and catalytic specificity of lipase was not enough, which limits its wide application. To address these challenges, an efficient quantitative detection method was first established for 1, 2-DAG (0.025-0.200 g/L) and 1, 3-DAG (0.025-0.150 g/L) by combining supercritical fluid chromatography with evaporative light scattering detector and optimizing the detection and analysis parameters. Based on the molecular docking between
MeSH term(s)	Humans ; Diglycerides ; Molecular Docking Simulation ; Binding Sites ; Catalysis ; Lipase/genetics
Chemical Substances	Diglycerides ; Lipase (EC 3.1.1.3)
Language	Chinese
Publishing date	2023-08-25
Publishing country	China
Document type	English Abstract ; Journal Article
ZDB-ID	1042206-7
ISSN	1872-2075 ; 1042-749X
ISSN (online)	1872-2075
ISSN	1042-749X
DOI	10.13345/j.cjb.220997
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Article: Exploring the anti-glioma mechanism of the active components of Cortex Periplocae based on network pharmacology and iTRAQ proteomics in vitro.

Huan, Jing / You, Cui-Ping / Lu, Yu-Cheng / Che, Feng-Yuan

Advances in clinical and experimental medicine : official organ Wroclaw Medical University

2023 Volume 32, Issue 11, Page(s) 1279–1290

Abstract: Background: The active components of Cortex Periplocae (CP) exert antitumor properties in many cancers. However, little is known about their effects on glioma or the related underlying mechanisms.: Objectives: The study investigated the underlying ... ...

Abstract	Background: The active components of Cortex Periplocae (CP) exert antitumor properties in many cancers. However, little is known about their effects on glioma or the related underlying mechanisms. Objectives: The study investigated the underlying mechanism of CP in treating glioma. Material and methods: The U251 and TG905 cells were treated with an ethanol extract from CP. Cell proliferation was detected using Cell Counting Kit-8 (CCK-8) and a colony formation assay. The flow cytometric analysis was applied to explore the induction of cell cycle arrest and apoptosis. The expression levels of cell cycleand apoptosis-associated proteins were measured with western blot. A network pharmacology method was performed to predict the potential mechanism underlying the effects of the active components of CP on glioma. Then, isobaric tags for relative and absolute quantitation (iTRAQ)-based quantitative proteomics analysis was used to verify the differentially expressed proteins and pathways in order to reveal the underlying mechanisms. Furthermore, to determine the iTRAQ results, 6 candidate proteins were chosen for quantification using parallel reaction monitoring (PRM). Results: The CP extract inhibited the proliferation of U251 and TG905 cells and induced cell cycle arrest and apoptosis. There are 16 active compounds of CP. The antitumor mechanism of CP may be related to the apoptosis pathway, p53 signaling pathway, PI3K-AKT pathway, or transcriptional misregulation in cancer pathway. Six proteins (HSP90AB1, TOP2A, ATP1A1, TGFβ1, ATP1B1, and TYMS) were determined to be key factors involved in regulating CP in glioma. Conclusions: Our research revealed the underlying mechanism of CP in treating glioma using integrated network pharmacology and iTRAQ-based quantitative proteomics technology.
MeSH term(s)	Humans ; Phosphatidylinositol 3-Kinases ; Proteomics ; Network Pharmacology ; Cell Line, Tumor ; Glioma/drug therapy ; Glioma/pathology ; Apoptosis ; Cell Proliferation ; Proto-Oncogene Proteins c-akt/metabolism
Chemical Substances	Phosphatidylinositol 3-Kinases (EC 2.7.1.-) ; Proto-Oncogene Proteins c-akt (EC 2.7.11.1)
Language	English
Publishing date	2023-11-29
Publishing country	Poland
Document type	Journal Article
ZDB-ID	2270257-X
ISSN	1899-5276 ; 1230-025X
ISSN	1899-5276 ; 1230-025X
DOI	10.17219/acem/161724
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Article ; Online: Engineering hyperthermophilic pullulanase to efficiently utilize corn starch for production of maltooligosaccharides and glucose.

Xie, Ting / Zhou, Li / Han, Laichuang / You, Cuiping / Liu, Zhongmei / Cui, Wenjing / Cheng, Zhongyi / Guo, Junling / Zhou, Zhemin

Food chemistry

2024 Volume 446, Page(s) 138652

Abstract: Pullulanase is a starch-debranching enzyme that hydrolyzes side chain of starch, oligosaccharides and pullulan. Nevertheless, the limited activities of pullulanases constrain their practical application. Herein, the hyperthermophilic type II pullulanase ... ...

Abstract	Pullulanase is a starch-debranching enzyme that hydrolyzes side chain of starch, oligosaccharides and pullulan. Nevertheless, the limited activities of pullulanases constrain their practical application. Herein, the hyperthermophilic type II pullulanase from Pyrococcus yayanosii CH1 (Pul
MeSH term(s)	Starch/chemistry ; Glucose ; Zea mays/metabolism ; Glycoside Hydrolases/metabolism ; Oligosaccharides/chemistry ; Archaea ; Substrate Specificity
Chemical Substances	Starch (9005-25-8) ; pullulanase (EC 3.2.1.41) ; maltooligosaccharides ; Glucose (IY9XDZ35W2) ; Glycoside Hydrolases (EC 3.2.1.-) ; Oligosaccharides
Language	English
Publishing date	2024-02-05
Publishing country	England
Document type	Journal Article
ZDB-ID	243123-3
ISSN	1873-7072 ; 0308-8146
ISSN (online)	1873-7072
ISSN	0308-8146
DOI	10.1016/j.foodchem.2024.138652
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Article ; Online: Computer-Aided Reconstruction and Application of

Zhou, Huimin / Cai, Yongchao / Long, Mengfei / Zheng, Nan / Zhang, Zehua / You, Cuiping / Hussain, Asif / Xia, Xiaole

Journal of agricultural and food chemistry

2024 Volume 72, Issue 2, Page(s) 1213–1227

Abstract: β-1,4-Endoxylanase is the most critical hydrolase for xylan degradation during lignocellulosic biomass utilization. However, its poor stability and activity in hot and alkaline environments hinder its widespread application. In this study, BhS7Xyl ... ...

Abstract	β-1,4-Endoxylanase is the most critical hydrolase for xylan degradation during lignocellulosic biomass utilization. However, its poor stability and activity in hot and alkaline environments hinder its widespread application. In this study, BhS7Xyl from
MeSH term(s)	Hot Temperature ; Alkalies ; Bacillus ; Endo-1,4-beta Xylanases/genetics ; Endo-1,4-beta Xylanases/metabolism ; Hydrolysis ; Enzyme Stability ; Hydrogen-Ion Concentration
Chemical Substances	Alkalies ; Endo-1,4-beta Xylanases (EC 3.2.1.8)
Language	English
Publishing date	2024-01-06
Publishing country	United States
Document type	Journal Article
ZDB-ID	241619-0
ISSN	1520-5118 ; 0021-8561
ISSN (online)	1520-5118
ISSN	0021-8561
DOI	10.1021/acs.jafc.3c08221
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Article ; Online: Simultaneous removal of tetracycline and sulfamethoxazole by laccase-mediated oxidation and ferrate(VI) oxidation: the impact of mediators and metal ions

Tian, Qiaopeng / Zhang, Yong / Meng, Di / Zhai, Lixin / Shen, Yu / You, Cuiping / Guan, Zhengbing / Liao, Xiangru

Environ Sci Pollut Res. 2023 Feb., v. 30, no. 6 p.15708-15721

2023

Abstract: This study explores the impact of mediators and metal ions of laccase-mediated oxidation and ferrate(VI) oxidation for the simultaneous removal of tetracycline antibiotics (TCs) and sulfonamide antibiotics (SAs) and to effectively remove their ... ...

Abstract	This study explores the impact of mediators and metal ions of laccase-mediated oxidation and ferrate(VI) oxidation for the simultaneous removal of tetracycline antibiotics (TCs) and sulfonamide antibiotics (SAs) and to effectively remove their antimicrobial activity. The results showed that the antimicrobial activity of tetracycline against Bacillus altitudinis and Escherichia coli was significantly reduced, and the antimicrobial activity of sulfamethoxazole against B. altitudinis disappeared completely after treatment with the laccase–ABTS system. The combination of 6.0 U/mL of laccase and 0.2 mmol/L of ABTS removed 100% of 20.0 mg/L of tetracycline after 1.0 min at pH 6.0 and 25.0 °C, whereas the removal ratio of 20.0 mg/L of sulfamethoxazole was only 6.7%. The Al³⁺ and Cu²⁺ ions promoted the oxidation, and the Mn²⁺ ion decelerated the oxidation of tetracycline and sulfamethoxazole by the laccase-mediator systems. In contrast, the antimicrobial activity of tetracycline against B. altitudinis and E. coli was shown to be significantly reduced, and the sulfamethoxazole still retained high antimicrobial activity against B. altitudinis after treatment with Fe(VI) oxidation. The removal ratio of 20.0 mg/L of tetracycline was 100% after 1.0 min of treatment with 982.0 mg/L of K₂FeO₄ at pH 6.0 and 25.0 °C, whereas the removal ratio of 20.0 mg/L of sulfamethoxazole was only 49.5%. The Al³⁺, Cu²⁺, and Mn²⁺ ions both decelerated the oxidation of tetracycline and sulfamethoxazole by Fe(VI) oxidation. In general, the combination of the laccase–ABTS system and Fe(VI) was proposed for the simultaneous treatment of TCs and SAs in wastewater and to effectively remove their antimicrobial activity.
Keywords	Bacillus altitudinis ; Escherichia coli ; antimicrobial properties ; laccase ; oxidation ; pH ; sulfamethoxazole ; tetracycline ; wastewater
Language	English
Dates of publication	2023-02
Size	p. 15708-15721.
Publishing place	Springer Berlin Heidelberg
Document type	Article ; Online
ZDB-ID	1178791-0
ISSN	1614-7499 ; 0944-1344
ISSN (online)	1614-7499
ISSN	0944-1344
DOI	10.1007/s11356-022-23232-0
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Article ; Online: Development of an auto-inducible expression system by nitrogen sources switching based on the nitrogen catabolite repression regulation.

Yan, Qin / Han, Laichuang / Liu, Xinyue / You, Cuiping / Zhou, Shengmin / Zhou, Zhemin

Microbial cell factories

2022 Volume 21, Issue 1, Page(s) 73

Abstract: Background: The construction of protein expression systems is mainly focused on carbon catabolite repression and quorum-sensing systems. However, each of these regulatory modes has an inherent flaw, which is difficult to overcome. Organisms also ... ...

Abstract	Background: The construction of protein expression systems is mainly focused on carbon catabolite repression and quorum-sensing systems. However, each of these regulatory modes has an inherent flaw, which is difficult to overcome. Organisms also prioritize using different nitrogen sources, which is called nitrogen catabolite repression. To date, few gene regulatory systems based on nitrogen catabolite repression have been reported. Results: In this study, we constructed a nitrogen switching auto-inducible expression system (NSAES) based on nitrogen catabolite regulation and nitrogen utilization in Aspergillus nidulans. The P Conclusions: We described an efficient auto-inducible protein expression system based on nitrogen catabolite regulation. The system could be useful for protein production in the laboratory and industrial applications. Simultaneously, NSAES provides a new auto-inducible expression regulation mode for other filamentous fungi.
MeSH term(s)	Ammonium Compounds/metabolism ; Catabolite Repression ; Glucuronidase ; Nitrates/metabolism ; Nitrogen/metabolism
Chemical Substances	Ammonium Compounds ; Nitrates ; Glucuronidase (EC 3.2.1.31) ; Nitrogen (N762921K75)
Language	English
Publishing date	2022-04-28
Publishing country	England
Document type	Journal Article
ZDB-ID	2091377-1
ISSN	1475-2859 ; 1475-2859
ISSN (online)	1475-2859
ISSN	1475-2859
DOI	10.1186/s12934-022-01794-5
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Article ; Online: Simultaneous removal of tetracycline and sulfamethoxazole by laccase-mediated oxidation and ferrate(VI) oxidation: the impact of mediators and metal ions.

Tian, Qiaopeng / Zhang, Yong / Meng, Di / Zhai, Lixin / Shen, Yu / You, Cuiping / Guan, Zhengbing / Liao, Xiangru

Environmental science and pollution research international

2022 Volume 30, Issue 6, Page(s) 15708–15721

Abstract	This study explores the impact of mediators and metal ions of laccase-mediated oxidation and ferrate(VI) oxidation for the simultaneous removal of tetracycline antibiotics (TCs) and sulfonamide antibiotics (SAs) and to effectively remove their antimicrobial activity. The results showed that the antimicrobial activity of tetracycline against Bacillus altitudinis and Escherichia coli was significantly reduced, and the antimicrobial activity of sulfamethoxazole against B. altitudinis disappeared completely after treatment with the laccase-ABTS system. The combination of 6.0 U/mL of laccase and 0.2 mmol/L of ABTS removed 100% of 20.0 mg/L of tetracycline after 1.0 min at pH 6.0 and 25.0 °C, whereas the removal ratio of 20.0 mg/L of sulfamethoxazole was only 6.7%. The Al
MeSH term(s)	Laccase/metabolism ; Sulfamethoxazole ; Escherichia coli/metabolism ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/chemistry ; Metals ; Tetracycline ; Oxidation-Reduction ; Ions ; Water Pollutants, Chemical/chemistry
Chemical Substances	ferrate ion (16836-06-9) ; Laccase (EC 1.10.3.2) ; Sulfamethoxazole (JE42381TNV) ; 2,2'-azino-di-(3-ethylbenzothiazoline)-6-sulfonic acid (28752-68-3) ; Anti-Bacterial Agents ; Metals ; Tetracycline (F8VB5M810T) ; Ions ; Water Pollutants, Chemical
Language	English
Publishing date	2022-09-29
Publishing country	Germany
Document type	Journal Article
ZDB-ID	1178791-0
ISSN	1614-7499 ; 0944-1344
ISSN (online)	1614-7499
ISSN	0944-1344
DOI	10.1007/s11356-022-23232-0
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Article: Stimulating mechanism of corn oil on biomass and polysaccharide production of Pleurotus tuber-regium mycelium

Hu, Yan-Hong / Ge, Meng-Die / Sun, Dan-Ni / Chen, Lei / Cheung, Peter C.K. / You, Cui-Ping / Chen, Xian-Zhong / Sun, Ming-Xue / Ng, Huisuan

International journal of biological macromolecules. 2022 Mar. 15, v. 201

2022

Abstract: Hyperbranched polysaccharides (HBPSs) are the main components in cell wall and exopolysaccharide (EPS) of Pleurotus tuber-regium. To enhance the yield of these macromolecules, corn oil at 4% addition exhibited the best effect for production of mycelial ... ...

Abstract	Hyperbranched polysaccharides (HBPSs) are the main components in cell wall and exopolysaccharide (EPS) of Pleurotus tuber-regium. To enhance the yield of these macromolecules, corn oil at 4% addition exhibited the best effect for production of mycelial biomass at 20.49 g/L and EPS at 0.59 g/L, which was 2.56 folds and 1.90 folds of the control, respectively. The treated hyphae were much thicker with smooth surface, while its cell wall content (43.81 ± 0.02%) was 1.96 times of the control (22.34 ± 0.01%). Moreover, a large number of lipid droplets could be visualized under the view of confocal laser scanning microscopy (CLSM). RNA-seq analysis revealed that corn oil could enter the cells and result in the up-regulation of genes on cell morphology and membrane permeability, as well as the down-regulation on expression level of polysaccharide hydrolase and genes involved in the MAPK pathway, all of which probably contribute to the increase of polysaccharides production.
Keywords	Pleurotus tuber-regium ; biomass ; cell walls ; corn oil ; exopolysaccharides ; hydrolases ; hyphae ; lipids ; membrane permeability ; mycelium ; sequence analysis
Language	English
Dates of publication	2022-0315
Size	p. 93-103.
Publishing place	Elsevier B.V.
Document type	Article
ZDB-ID	282732-3
ISSN	1879-0003 ; 0141-8130
ISSN (online)	1879-0003
ISSN	0141-8130
DOI	10.1016/j.ijbiomac.2021.12.149
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Article ; Online: A novel composition of two heterozygous GFM1 mutations in a Chinese child with epilepsy and mental retardation.

You, Cuiping / Xu, Na / Qiu, Shiyan / Li, Yufen / Xu, Liyun / Li, Xia / Yang, Li

Brain and behavior

2020 Volume 10, Issue 10, Page(s) e01791

Abstract: Introduction: G elongation factor mitochondrial 1 (GFM1) encodes one of the mitochondrial translation elongation factors. GFM1 variants were reported to be associated with neurological diseases and liver diseases in a few cases. Here, we present a novel ...

Abstract	Introduction: G elongation factor mitochondrial 1 (GFM1) encodes one of the mitochondrial translation elongation factors. GFM1 variants were reported to be associated with neurological diseases and liver diseases in a few cases. Here, we present a novel composition of two heterozygous mutations of GFM1 in a boy with epilepsy, mental retardation, and other unusual phenotypes. Methods: The patient was found to be blind and experienced recurrent convulsive seizures such as nodding and hugging at the age of 3 months. After antiepileptic treatment with topiramate, he had no obvious seizures but still had mental retardation. The patient vomited frequently at 16 months old, sometimes accompanied by epileptic seizures. Hematuria metabolic screening, mutation screening of mitochondrial gene, and mitochondrial nuclear gene were negative. Then, he was analyzed by whole-exome sequencing (WES). Results: Whole-exome sequencing revealed a novel composition of two heterozygous mutations in GFM1, the maternal c.679G > A (has not been reported) and the paternal c.1765-1_1765-2del (previously reported). At present, there is no specific and effective treatment for the disease, and the prognosis is very poor. Conclusion: The discovery of new phenotypes and new genotypes will further enrich the diagnosis information of the disease and provide more experiences for clinicians to quickly diagnose the disease and judge the prognosis.
MeSH term(s)	Child ; China ; Epilepsy/genetics ; Heterozygote ; Humans ; Infant ; Intellectual Disability/genetics ; Male ; Mitochondrial Proteins ; Mutation ; Peptide Elongation Factor G/genetics
Chemical Substances	GFM1 protein, human ; Mitochondrial Proteins ; Peptide Elongation Factor G
Language	English
Publishing date	2020-08-09
Publishing country	United States
Document type	Case Reports ; Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2623587-0
ISSN	2162-3279 ; 2162-3279
ISSN (online)	2162-3279
ISSN	2162-3279
DOI	10.1002/brb3.1791
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Article: Proteomic landscape of liver tissue in old male mice that are long-term treated with polysaccharides from Sargassum fusiforme

Chen, Peichao / Zhang, Ya / Xu, Man / Chen, Hongjun / Zou, Huixi / Zhang, Xu / Tong, Haibin / You, Cuiping / Wu, Mingjiang

Food & function. 2020 Apr. 30, v. 11, no. 4

2020

Abstract: Sargassum fusiforme is a type of brown algae and well known as a longevity promoting vegetable in Northeastern Asia. The polysaccharides derived from Sargassum fusiforme (SFPs) have been suggested as an antioxidant component for anti-aging function. ... ...

Abstract	Sargassum fusiforme is a type of brown algae and well known as a longevity promoting vegetable in Northeastern Asia. The polysaccharides derived from Sargassum fusiforme (SFPs) have been suggested as an antioxidant component for anti-aging function. However, global molecular changes in vivo by SFPs have not been fully elucidated. Here, we present a proteomics study using liver tissues of aged male mice that were fed with SFPs. Of forty-nine protein spots, thirty-eight were up-regulated and eleven were down-regulated, showing significant changes in abundance by two-dimensional gel electrophoresis. These differentially expressed proteins were mainly involved in oxidation–reduction, amino acid metabolism, and energy metabolism. Forty-six proteins were integrated into a unified network, with catalase (Cat) at the center. Intriguingly, most of the proteins were speculated as mitochondrial-located proteins. Our findings suggested that SFPs modulated antioxidant enzymes to scavenge redundant free radicals, thus preventing oxidative damage. In conclusion, our study provides a proteomic view on how SFPs have beneficial effects on the aspects of antioxidant and energy metabolism during the aging process. This study facilitates the understanding of anti-aging molecular mechanisms in polysaccharides derived from Sargassum fusiforme.
Keywords	Sargassum fusiforme ; amino acid metabolism ; antioxidant enzymes ; catalase ; energy metabolism ; free radicals ; liver ; longevity ; males ; mice ; polysaccharides ; protein synthesis ; proteins ; proteomics ; tissues ; two-dimensional gel electrophoresis ; vegetables ; Asia
Language	English
Dates of publication	2020-0430
Size	p. 3632-3644.
Publishing place	The Royal Society of Chemistry
Document type	Article
Note	NAL-light
ZDB-ID	2612033-1
ISSN	2042-650X ; 2042-6496
ISSN (online)	2042-650X
ISSN	2042-6496
DOI	10.1039/d0fo00187b
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