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  1. Article ; Online: Gut microbiome affects the response to immunotherapy in non-small cell lung cancer.

    Ren, Shengnan / Feng, Lingxin / Liu, Haoran / Mao, Yuke / Yu, Zhuang

    Thoracic cancer

    2024  Volume 15, Issue 14, Page(s) 1149–1163

    Abstract: Background: Immunotherapy has revolutionized cancer treatment. Recent studies have suggested that the efficacy of immunotherapy can be further enhanced by the influence of gut microbiota. In this study, we aimed to investigate the impact of bacteria on ... ...

    Abstract Background: Immunotherapy has revolutionized cancer treatment. Recent studies have suggested that the efficacy of immunotherapy can be further enhanced by the influence of gut microbiota. In this study, we aimed to investigate the impact of bacteria on the effectiveness of cancer immunotherapy by combining analysis of clinical samples with validation in animal models.
    Methods: In order to characterize the diversity and composition of microbiota and its relationship with response to immune checkpoint inhibitors (ICIs), 16S ribosomal RNA (rRNA) and GC-MS sequencing was performed on 71 stool samples from patients with advanced non-small cell lung cancer (NSCLC) prior to treatment with immune checkpoint blockade (ICB). Furthermore, fecal microbiota transplantation (FMT) was performed from different patients into mice and a subcutaneous tumor model established using the Lewis lung cancer cell line to evaluate the therapeutic effect of PD-1 on mice with varying gut microbiota.
    Results: The results demonstrated a significant association between elevated gut microbiota diversity and response to treatment with ICIs, p < 0.05. Faecalibacterium was markedly increased in the gut microbiota of responders (R), accompanied by increased short-chain fatty acid (SCFA) levels, especially butanoic acid, acetic acid and hexanoic acid, p < 0.05. Additionally, FMT from R and nonresponders (NR) could promote an anticancer effect and reduce the expression of Ki-67 cells in tumors in mice, p < 0.05. Moreover, R and NR FMT did not alter PD-L1 expression in the tumor tissues of mice, p > 0.05. The diversity of gut microbiota consistently correlated with an optimistic prognosis in NSCLC patients with immunotherapy, which could be functionally mediated by SCFAs.
    Conclusion: The findings of the present study indicated that the diversity of gut microbiota and SCFAs is related to the efficacy of immunotherapy. FMT can effectively delay tumor progression, and enhance the effect of immunotherapy, thus providing evidence for improving the efficacy of immunotherapy in NSCLC patients.
    MeSH term(s) Carcinoma, Non-Small-Cell Lung/therapy ; Gastrointestinal Microbiome ; Animals ; Mice ; Humans ; Lung Neoplasms/therapy ; Immunotherapy/methods ; Female ; Male ; Middle Aged ; Aged ; Immune Checkpoint Inhibitors/pharmacology ; Immune Checkpoint Inhibitors/therapeutic use
    Language English
    Publishing date 2024-04-04
    Publishing country Singapore
    Document type Journal Article
    ZDB-ID 2625856-0
    ISSN 1759-7714 ; 1759-7706
    ISSN (online) 1759-7714
    ISSN 1759-7706
    DOI 10.1111/1759-7714.15303
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: The algorithm and implementation of an extension to LLVM for solving the blocking between instruction sink and division-modulo combine

    YungYu Zhuang / Ting-Wei Lin / Yin-Jung Huang

    Connection Science, Vol 35, Iss

    2023  Volume 1

    Abstract: Compiler optimization presents a formidable challenge, seeking to enhance code quality through various techniques. One significant obstacle is the phase-ordering problem, where the sequence of optimization algorithms can impact code quality and ... ...

    Abstract Compiler optimization presents a formidable challenge, seeking to enhance code quality through various techniques. One significant obstacle is the phase-ordering problem, where the sequence of optimization algorithms can impact code quality and potentially lead to performance deterioration. While machine learning has shown promise in addressing this issue, it still encounters limitations in certain scenarios.Instruction Sink is a machine-independent optimization that segregates instructions like modulo and division into separate basic blocks. This separation prevents the application of the machine-dependent optimization called Division-Modulo Combine at the backend, which could otherwise lead to a decline in program performance. However, reordering these optimizations to avoid conflicts can prove to be challenging. In this paper, we propose an algorithm to enhance Instruction Sink, resolving the blocking problem, and implements it within the LLVM optimizer. Leveraging the modularity of LLVM enables us to tackle all affected back-end issues simultaneously.To assess the effectiveness of our algorithm, we conduct a comprehensive evaluation focusing on feasibility, compatibility, and targeted improvements. The results demonstrate that our approach effectively addresses the blocking problem without conflicting with other optimization algorithms, solely impacting problematic instructions while leaving normal ones unaffected.
    Keywords Code optimization ; Phase-ordering ; Code motion ; LLVM ; software engineering & systems development ; Electronic computers. Computer science ; QA75.5-76.95
    Subject code 510
    Language English
    Publishing date 2023-12-01T00:00:00Z
    Publisher Taylor & Francis Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: To investigate the changes in colonic pouch function and retention rate after ileal pouch-anal anastomosis in elderly patients with ulcerative colitis: a multicenter retrospective analysis.

    He, Kaiqiang / Yu, Zhuang / Wu, Yuan

    Minerva gastroenterology

    2023  Volume 70, Issue 1, Page(s) 139–142

    MeSH term(s) Humans ; Aged ; Colitis, Ulcerative/surgery ; Proctocolectomy, Restorative/adverse effects ; Colonic Pouches ; Anastomosis, Surgical
    Language English
    Publishing date 2023-06-20
    Publishing country Italy
    Document type Multicenter Study ; Journal Article
    ZDB-ID 3062713-8
    ISSN 2724-5365
    ISSN (online) 2724-5365
    DOI 10.23736/S2724-5985.23.03454-X
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Clinical research progress in Traditional Chinese Medicine in treating wound healing after anal fistula surgery.

    Pingping, Mei / Wenzhe, Feng / Peng, Shi / Wenxiu, Zhang / Yu, Zhuang

    Journal of traditional Chinese medicine = Chung i tsa chih ying wen pan

    2023  Volume 43, Issue 5, Page(s) 1047–1054

    Abstract: In the study of the mechanism of wound healing after anal fistula surgery, how to scientifically and efficiently promote wound healing is of great significance. At present, modern medical treatment of wounds after anal fistula surgery mostly focuses on ... ...

    Abstract In the study of the mechanism of wound healing after anal fistula surgery, how to scientifically and efficiently promote wound healing is of great significance. At present, modern medical treatment of wounds after anal fistula surgery mostly focuses on physical therapy intervention, new wound dressing and packing, and external application of growth factors. However, these therapies have many problems, and there is still no consensus on their clinical use. Traditional Chinese Medicine (TCM) has several methods to promote wound healing, such as oral administration, rubbing, and fumigation, which have a long history and obvious efficacy, but research in this area is relatively scattered and lacks classification and summarizing. Therefore, this paper analyzes and summarizes the existing research on TCM for promotion of wound healing after anal fistula surgery, carries out targeted analyses according to different clinical syndromes and treatment methods, and analyzes the defects in current research and anticipates future research trends in order to provide theoretical support for the advantages of TCM in promoting wound healing after anal fistula surgery.
    MeSH term(s) Humans ; Medicine, Chinese Traditional ; Administration, Oral ; Wound Healing ; Rectal Fistula/drug therapy ; Rectal Fistula/surgery
    Language English
    Publishing date 2023-09-07
    Publishing country China
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 603186-9
    ISSN 2589-451X ; 0254-6272 ; 0255-2922
    ISSN (online) 2589-451X ; 0254-6272
    ISSN 0255-2922
    DOI 10.19852/j.cnki.jtcm.20230630.002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Prospective observation of metoclopramide in preventing nausea and vomiting induced by oxycodone

    CUI Li, YU Zhuang

    Jichu yixue yu linchuang, Vol 40, Iss 9, Pp 1201-

    2020  Volume 1205

    Abstract: Objective To observe the preventive effect of metoclopramide tablets on opioid-induced nausea and vomiting(OINV)caused by oxycodone sustained-release tablets during the treatment of cancer pain. Methods The method of prospective observation was used by ... ...

    Abstract Objective To observe the preventive effect of metoclopramide tablets on opioid-induced nausea and vomiting(OINV)caused by oxycodone sustained-release tablets during the treatment of cancer pain. Methods The method of prospective observation was used by collecting 120 patients with malignant tumors who were treated with oxycodone sustained-release tablets for the first time. According to the NRS scores, the patients were divided into two groups: moderate pain (4-6 points) and severe pain (7-10 points). The patients were treated with oxycodone sustained-release tablets with an initial dose of 10 mg and 20 mg q12 h respectively, and then titrated according to the pain control. The patients were divided into observation group (n=60) and control group (n=60) by using the method of random number table. The observation group received oral oxycodone sustained release tablets and metoclopramide tablets of 10 mg tid for preventive treatment, and ondansetron tablets of 8 mg antiemetics when OINV reaching degree Ⅱ. The control group did not receive preventive antiemetic treatment until OINV reached grade Ⅱ when metoclopramide tablet of 10 mg tid for antiemetic treatment was added. If the symptoms did not relieve, ondansetron tablets of 8 mg for intensive treatment would be added. The differences between the incidence of adverse reactions such as OINV, constipation, urinary retention, drowsiness, respiratory depression, QOL score, and NRS score were compared between the two groups after the observation period of 14 days. Results The incidence of OINV of the observation group was significantly lower than that of the control group (P<0.05) on days 1, 2, 3, and 7. There was no significant difference in the prescription frequence of ondansetron between the two groups (10.0% vs 15.0%).The incidence of constipation in the observation group was significantly lower than in the control group (45.0% vs 65.0%)(P<0.05). There was no significant difference in NRS scores on day 14 between the observation group and the control group. The ...
    Keywords cancer pain|oxycodone|metoclopramide|nausea and vomiting|prophylactic administration ; Medicine ; R
    Subject code 630
    Language Chinese
    Publishing date 2020-09-01T00:00:00Z
    Publisher Institute of Basic Medical Sciences and Peking Union Medical College Hospital, Chinese Academy of Medical Sciences / Peking Union Medical College.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: A novel TUBG1 mutation with neurodevelopmental disorder caused by malformations of cortical development

    Ru Shen / Zhen Zhang / Yu Zhuang / Xiaohong Yang / Lifen Duan

    BioMed Research International, Vol

    2021  Volume 2021

    Abstract: Neurodevelopmental disorder caused by malformations of cortical development is a rare neurological disease. Heterozygous missense variants in the TUBG1 gene lead to malformations of human cortical development, which further result in intellectual ... ...

    Abstract Neurodevelopmental disorder caused by malformations of cortical development is a rare neurological disease. Heterozygous missense variants in the TUBG1 gene lead to malformations of human cortical development, which further result in intellectual disability, developmental retardation, and epilepsy. To the best of our knowledge, only thirteen patients and a total of nine pathogenic TUBG1 variants have been described in the published literature. This study reports the case details and genetic data analysis of a girl (aged 8 years, 9 months) with developmental delay, psychomotor regression, epilepsy, and left external ear deformity. A novel TUBG1 mutation was identified by whole-exome sequencing and Sanger sequencing, confirming that this mutation may be the cause of the neurodevelopmental disorders. This case report characterizes the phenotypic spectrum, molecular genetic findings, and functional consequences of novel pathogenic TUBG1 variants in neurodevelopmental disorders caused by cortical development malformations.
    Keywords Medicine ; R
    Subject code 616
    Language English
    Publishing date 2021-01-01T00:00:00Z
    Publisher Hindawi Limited
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: WeChat-based vestibular rehabilitation for patients with chronic vestibular syndrome

    Peixia Wu / Yafang Wan / Yu Zhuang / Chennan Wang / Shuxin Xi

    BMJ Open, Vol 11, Iss

    protocol for a randomised controlled trial

    2021  Volume 3

    Abstract: Introduction Dizziness is one of the most common symptoms seen in chronic vestibular syndrome, which has been linked to an increased risk of falls, substantial disability and negative psychological consequences. Recent evidence demonstrated that ... ...

    Abstract Introduction Dizziness is one of the most common symptoms seen in chronic vestibular syndrome, which has been linked to an increased risk of falls, substantial disability and negative psychological consequences. Recent evidence demonstrated that vestibular rehabilitation therapy (VRT) is effective for treating chronic vestibular symptoms. However, the delivery of VRT remains challenging because of lack of facility, insufficient qualified physiotherapist resources, as well as being in the actual situation of the pandemic. WeChat, the most widely used mobile app in China, offers a more viable way of delivering VRT than traditional office-based approaches do. This study aimed to evaluate the effectiveness of the WeChat-VRT programme for patients with chronic vestibular syndrome.Methods and analysis This is a parallel-group, assessor-blinded randomised controlled trial. Fifty patients who experienced chronic vestibular symptoms longer than 3 months will be randomised into either the WeChat-VRT group or the usual care (UC) group. Participants in the WeChat-VRT group will receive 8-week VRT mainly through the WeChat app. Participants in the UC group will receive once-weekly VRT in the clinic for 8 weeks and remaining time home-based exercise. Outcome assessments will take place at baseline and at the 8th, 12th and 24th weeks after randomisation. The primary outcome will be the change from baseline to the eighth week on the patients’ functional improvements quantified by the Functional Gait Assessment (FGA). The secondary outcomes will include dynamic balance function, emotional well-being, and vestibular activity and participation level. Intention-to-treat analysis will be performed using generalised estimation equation modelling.Ethics and dissemination The trial has been reviewed and approved by the Institutional Review Board of Eye and Ear Nose Throat Hospital of Fudan University (reference number 2017047/1). The study findings will be disseminated via peer-reviewed journals and conferences.Trial registration ...
    Keywords Medicine ; R
    Subject code 150
    Language English
    Publishing date 2021-03-01T00:00:00Z
    Publisher BMJ Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: EOESGC

    Shanchen Pang / Yu Zhuang / Xinzeng Wang / Fuyu Wang / Sibo Qiao

    BMC Medical Informatics and Decision Making, Vol 21, Iss 1, Pp 1-

    predicting miRNA-disease associations based on embedding of embedding and simplified graph convolutional network

    2021  Volume 12

    Abstract: Abstract Background A large number of biological studies have shown that miRNAs are inextricably linked to many complex diseases. Studying the miRNA-disease associations could provide us a root cause understanding of the underlying pathogenesis in which ... ...

    Abstract Abstract Background A large number of biological studies have shown that miRNAs are inextricably linked to many complex diseases. Studying the miRNA-disease associations could provide us a root cause understanding of the underlying pathogenesis in which promotes the progress of drug development. However, traditional biological experiments are very time-consuming and costly. Therefore, we come up with an efficient models to solve this challenge. Results In this work, we propose a deep learning model called EOESGC to predict potential miRNA-disease associations based on embedding of embedding and simplified convolutional network. Firstly, integrated disease similarity, integrated miRNA similarity, and miRNA-disease association network are used to construct a coupled heterogeneous graph, and the edges with low similarity are removed to simplify the graph structure and ensure the effectiveness of edges. Secondly, the Embedding of embedding model (EOE) is used to learn edge information in the coupled heterogeneous graph. The training rule of the model is that the associated nodes are close to each other and the unassociated nodes are far away from each other. Based on this rule, edge information learned is added into node embedding as supplementary information to enrich node information. Then, node embedding of EOE model training as a new feature of miRNA and disease, and information aggregation is performed by simplified graph convolution model, in which each level of convolution can aggregate multi-hop neighbor information. In this step, we only use the miRNA-disease association network to further simplify the graph structure, thus reducing the computational complexity. Finally, feature embeddings of both miRNA and disease are spliced into the MLP for prediction. On the EOESGC evaluation part, the AUC, AUPR, and F1-score of our model are 0.9658, 0.8543 and 0.8644 by 5-fold cross-validation respectively. Compared with the latest published models, our model shows better results. In addition, we predict the top 20 ...
    Keywords miRNA-disease associations ; Embedding of embedding ; Simplified graph convolutional network ; Coupled heterogeneous graph ; Computer applications to medicine. Medical informatics ; R858-859.7
    Subject code 006
    Language English
    Publishing date 2021-11-01T00:00:00Z
    Publisher BMC
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Design and experimental research of a compact directional coupler for X-band relativistic triaxial klystron amplifier.

    Zhang, Wei / Yu, Zhuang / Ju, Jinchuan / He, Changjie / Zhang, Qiang / Dang, Fangchao / Zhou, Yunxiao

    The Review of scientific instruments

    2023  Volume 94, Issue 1, Page(s) 14713

    Abstract: To realize online measurement of power, frequency, and phase for a modularized relativistic triaxial klystron amplifier in a narrow space, a compact directional coupler with high directivity, high power handling capacity, and large bandwidth has been ... ...

    Abstract To realize online measurement of power, frequency, and phase for a modularized relativistic triaxial klystron amplifier in a narrow space, a compact directional coupler with high directivity, high power handling capacity, and large bandwidth has been investigated numerically and experimentally. The method with coupling holes distributed in both the longitudinal and lateral directions is proposed, and the simulation results indicate that when two holes are employed, directivity larger than 20 dB is achieved over a 300 MHz bandwidth in the X-band and the maximal electric field strength is controlled to be 198.5 kV/cm with 1 GW power injection, while the whole coupler longitude is optimized to be as short as 50 mm. High power experiments have been performed with a 10 GHz relativistic triaxial klystron amplifier, and the results show that the measured power, frequency, and phase shift of the directional coupler have good agreement with the results obtained in the far-field.
    Language English
    Publishing date 2023-01-21
    Publishing country United States
    Document type Journal Article
    ZDB-ID 209865-9
    ISSN 1089-7623 ; 0034-6748
    ISSN (online) 1089-7623
    ISSN 0034-6748
    DOI 10.1063/5.0130103
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Effects of liposomal bupivacaine in preoperative fascia iliac block on postoperative pain and delirium in elderly patients undergoing hip fracture surgery: a study protocol for a randomised, parallel controlled prospective clinical study.

    Hao, Yingxiang / Li, Weiwen / Zheng, Minjia / Li, Xiang / Wu, Xinwan / Yu, Zhuang / Liu, Shen / Li, Jinbao / Xu, Hongjiao

    BMJ open

    2024  Volume 14, Issue 1, Page(s) e079067

    Abstract: Introduction: Postoperative delirium (POD) is the most common acute fluctuating mental state change after hip fractures in older adults. Postoperative pain is a Grade A risk factor for POD and is closely related to the prognosis of patients undergoing ... ...

    Abstract Introduction: Postoperative delirium (POD) is the most common acute fluctuating mental state change after hip fractures in older adults. Postoperative pain is a Grade A risk factor for POD and is closely related to the prognosis of patients undergoing hip fracture surgery. The fascia iliac block has a definite analgesic effect and few side effects, and several studies have reported that it reduces the occurrence of POD in patients undergoing general anaesthesia for hip fracture surgery. Liposomal bupivacaine is a local anaesthetic with a long half-life that significantly reduces the use of opioids and is conducive to patient prognosis and recovery. However, whether regional nerve block analgesia can decrease the occurrence of POD in elderly patients undergoing hip fracture surgery has not been reported.
    Methods and analysis: This is a single-blinded, randomised, parallel-controlled prospective clinical study. Participants will be randomly assigned preoperatively to either the liposomal bupivacaine (ie, Exparel) or ropivacaine groups by block randomisation. Then, the occurrence of POD (primary outcome) and postoperative pain (secondary outcome) will be evaluated.
    Ethics and dissemination: This research protocol complies with the Standard Protocol Items: Recommendations for Interventional Trials (SPIRIT) 2013 guidelines and is approved by the Ethics Committee of Shanghai General Hospital (ID 2023-437). The original data are expected to be released in July 2029 on the ResMan original data-sharing platform (IPD-sharing platform) of the China Clinical Trial Registry, which can be viewed on the following website: http://www.medresman.org.cn.
    Prospero registration number: ChiCTR2300074022.
    MeSH term(s) Aged ; Humans ; Prospective Studies ; China ; Hip Fractures/surgery ; Pain, Postoperative/drug therapy ; Pain, Postoperative/prevention & control ; Anesthetics, Local/therapeutic use ; Bupivacaine/therapeutic use ; Delirium/etiology ; Delirium/prevention & control ; Randomized Controlled Trials as Topic
    Chemical Substances Anesthetics, Local ; Bupivacaine (Y8335394RO)
    Language English
    Publishing date 2024-01-06
    Publishing country England
    Document type Clinical Trial Protocol ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2599832-8
    ISSN 2044-6055 ; 2044-6055
    ISSN (online) 2044-6055
    ISSN 2044-6055
    DOI 10.1136/bmjopen-2023-079067
    Database MEDical Literature Analysis and Retrieval System OnLINE

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