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  1. Article: Genome-wide identification and expression profiling of two-component system (TCS) genes in

    Sadaqat, Muhammad / Umer, Basit / Attia, Kotb A / Abdelkhalik, Amr F / Azeem, Farrukh / Javed, Muhammad Rizwan / Fatima, Kinza / Zameer, Roshan / Nadeem, Majid / Tanveer, Muhammad Hammad / Sun, Sangmi / Ercisli, Sezai / Nawaz, Muhammad Amjad

    Frontiers in genetics

    2023  Volume 14, Page(s) 1142544

    Abstract: The Two-component system (TCS) consists of Histidine kinases (HKs), Phosphotransfers (HPs), and response regulator (RR) proteins. It has an important role in signal transduction to respond to a wide variety of abiotic stresses and hence in plant ... ...

    Abstract The Two-component system (TCS) consists of Histidine kinases (HKs), Phosphotransfers (HPs), and response regulator (RR) proteins. It has an important role in signal transduction to respond to a wide variety of abiotic stresses and hence in plant development.
    Language English
    Publishing date 2023-05-30
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2606823-0
    ISSN 1664-8021
    ISSN 1664-8021
    DOI 10.3389/fgene.2023.1142544
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Genome-Wide Characterization of Superoxide Dismutase (SOD) Genes in

    Zameer, Roshan / Fatima, Kinza / Azeem, Farrukh / ALgwaiz, Hussah I M / Sadaqat, Muhammad / Rasheed, Asima / Batool, Riffat / Shah, Adnan Noor / Zaynab, Madiha / Shah, Anis Ali / Attia, Kotb A / AlKahtani, Muneera D F / Fiaz, Sajid

    Frontiers in plant science

    2022  Volume 13, Page(s) 870241

    Abstract: Superoxide dismutase (SOD) proteins are important antioxidant enzymes that help plants to grow, develop, and respond to a variety of abiotic stressors. SOD gene family has been identified in a number of plant species but not yet ... ...

    Abstract Superoxide dismutase (SOD) proteins are important antioxidant enzymes that help plants to grow, develop, and respond to a variety of abiotic stressors. SOD gene family has been identified in a number of plant species but not yet in
    Language English
    Publishing date 2022-06-08
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2022.870241
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Genome-wide analysis of potassium transport genes in Gossypium raimondii suggest a role of GrHAK/KUP/KT8, GrAKT2.1 and GrAKT1.1 in response to abiotic stress

    Azeem, Farrukh / Zameer, Roshan / Rehman Rashid, Muhammad Abdul / Rasul, Ijaz / Ul-Allah, Sami / Siddique, Muhammad Hussnain / Fiaz, Sajid / Raza, Ali / Younas, Afifa / Rasool, Asima / Ali, Muhammad Amjad / Anwar, Sultana / Siddiqui, Manzer H.

    Plant physiology and biochemistry. 2022 Jan. 01, v. 170

    2022  

    Abstract: Potassium (K⁺) is an important macro-nutrient for plants, which comprises almost 10% of plant's dry mass. It plays a crucial role in the growth of plants as well as other important processes related to metabolism and stress tolerance. Plants have a ... ...

    Abstract Potassium (K⁺) is an important macro-nutrient for plants, which comprises almost 10% of plant's dry mass. It plays a crucial role in the growth of plants as well as other important processes related to metabolism and stress tolerance. Plants have a complex and well-organized potassium distribution system (channels and transporters). Cotton is the most important economic crop, which is the primary source of natural fiber. Soil deficiency in K⁺ can negatively affect yield and fiber quality of cotton. However, potassium transport system in cotton is poorly studied. Current study identified 43 Potassium Transport System (PTS) genes in Gossypium raimondii genome. Based on conserved domains, transmembrane domains, and motif structures, these genes were classified as K⁺ transporters (2 HKTs, 7 KEAs, and 16 KUP/HAK/KTs) and K⁺ channels (11 Shakers and 7 TPKs/KCO). The phylogenetic comparison of GrPTS genes from Arabidopsis thaliana, Glycine max, Oryza sativa, Medicago truncatula and Cicer arietinum revealed variations in PTS gene conservation. Evolutionary analysis predicted that most GrPTS genes were segmentally duplicated. Gene structure analysis showed that the intron/exon organization of these genes was conserved in specific-family. Chromosomal localization demonstrated a random distribution of PTS genes across all the thirteen chromosomes except chromosome six. Many stress responsive cis-regulatory elements were predicted in promoter regions of GrPTS genes. The RNA-seq data analysis followed by qRT-PCR validation demonstrated that PTS genes potentially work in groups against environmental factors. Moreover, a transporter gene (GrHAK/KUP/KT8) and two channel genes (GrAKT2.1 and GrAKT1.1) are important candidate genes for plant stress response. These results provide useful information for further functional characterization of PTS genes with the breeding aim of stress-resistant cultivars.
    Keywords Arabidopsis thaliana ; Cicer arietinum ; Glycine max ; Gossypium raimondii ; Medicago truncatula ; Oryza sativa ; abiotic stress ; chromosome mapping ; chromosomes ; cotton ; cultivars ; exons ; fiber quality ; genome-wide association study ; germplasm conservation ; introns ; metabolism ; phylogeny ; plant stress ; potassium ; sequence analysis ; soil ; stress response ; stress tolerance
    Language English
    Dates of publication 2022-0101
    Size p. 110-122.
    Publishing place Elsevier Masson SAS
    Document type Article
    ZDB-ID 742978-2
    ISSN 1873-2690 ; 0981-9428
    ISSN (online) 1873-2690
    ISSN 0981-9428
    DOI 10.1016/j.plaphy.2021.11.038
    Database NAL-Catalogue (AGRICOLA)

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    In stock of ZB MED Bonn / Germany

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  4. Article: Two-Component System Genes in

    Zameer, Roshan / Sadaqat, Muhammad / Fatima, Kinza / Fiaz, Sajid / Rasul, Sumaira / Zafar, Hadeqa / Qayyum, Abdul / Nashat, Naima / Raza, Ali / Shah, Adnan Noor / Batool, Riffat / Azeem, Farrukh / Sun, Sangmi / Chung, Gyuhwa

    Frontiers in genetics

    2021  Volume 12, Page(s) 794305

    Abstract: The two-component signal transduction system (TCS) acts in a variety of physiological processes in lower organisms and has emerged as a key signaling system in both prokaryotes and eukaryotes, including plants. TCS genes assist plants in processes such ... ...

    Abstract The two-component signal transduction system (TCS) acts in a variety of physiological processes in lower organisms and has emerged as a key signaling system in both prokaryotes and eukaryotes, including plants. TCS genes assist plants in processes such as stress resistance, cell division, nutrition signaling, leaf senescence, and chloroplast division. In plants, this system is composed of three types of proteins: response regulators (RRs), histidine kinases (HKs), and histidine phosphotransfer proteins (HPs). We aimed to study the
    Language English
    Publishing date 2021-11-25
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2606823-0
    ISSN 1664-8021
    ISSN 1664-8021
    DOI 10.3389/fgene.2021.794305
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Genome-wide analysis of potassium transport genes in Gossypium raimondii suggest a role of GrHAK/KUP/KT8, GrAKT2.1 and GrAKT1.1 in response to abiotic stress.

    Azeem, Farrukh / Zameer, Roshan / Rehman Rashid, Muhammad Abdul / Rasul, Ijaz / Ul-Allah, Sami / Siddique, Muhammad Hussnain / Fiaz, Sajid / Raza, Ali / Younas, Afifa / Rasool, Asima / Ali, Muhammad Amjad / Anwar, Sultana / Siddiqui, Manzer H

    Plant physiology and biochemistry : PPB

    2021  Volume 170, Page(s) 110–122

    Abstract: Potassium ( ... ...

    Abstract Potassium (K
    MeSH term(s) Gene Expression Regulation, Plant ; Genome, Plant ; Gossypium/genetics ; Gossypium/metabolism ; Multigene Family ; Phylogeny ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Potassium/metabolism ; Stress, Physiological/genetics
    Chemical Substances Plant Proteins ; Potassium (RWP5GA015D)
    Language English
    Publishing date 2021-11-29
    Publishing country France
    Document type Journal Article
    ZDB-ID 742978-2
    ISSN 1873-2690 ; 0981-9428
    ISSN (online) 1873-2690
    ISSN 0981-9428
    DOI 10.1016/j.plaphy.2021.11.038
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    Kategorien

    In stock of ZB MED Bonn / Germany

    Z 2696: Show issues
    Z 2005/727: Show issues

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    Inter-library loan at ZB MED

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  6. Article: Genome-Wide Identification and Expression Profiling of Potassium Transport-Related Genes in

    Azeem, Farrukh / Ijaz, Usman / Ali, Muhammad Amjad / Hussain, Sabir / Zubair, Muhammad / Manzoor, Hamid / Abid, Muhammad / Zameer, Roshan / Kim, Dong-Seon / Golokhvast, Kirill S / Chung, Gyuhwa / Sun, Sangmi / Nawaz, Muhammad Amjad

    Plants (Basel, Switzerland)

    2021  Volume 11, Issue 1

    Abstract: Potassium ( ... ...

    Abstract Potassium (K
    Language English
    Publishing date 2021-12-21
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants11010002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Genome-Wide Identification, Genomic Organization, and Characterization of Potassium Transport-Related Genes in

    Siddique, Muhammad Hussnain / Babar, Naeem Iqbal / Zameer, Roshan / Muzammil, Saima / Nahid, Nazia / Ijaz, Usman / Masroor, Ashir / Nadeem, Majid / Rashid, Muhammad Abdul Rehman / Hashem, Abeer / Azeem, Farrukh / Fathi Abd Allah, Elsayed

    Plants (Basel, Switzerland)

    2021  Volume 10, Issue 11

    Abstract: Potassium is the most important and abundant inorganic cation in plants and it can comprise up to 10% of a plant's dry weight. Plants possess complex systems of transporters and channels for the transport of ... ...

    Abstract Potassium is the most important and abundant inorganic cation in plants and it can comprise up to 10% of a plant's dry weight. Plants possess complex systems of transporters and channels for the transport of K
    Language English
    Publishing date 2021-10-20
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants10112238
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Genome-Wide Identification and Expression Profiling of Potassium Transport-Related Genes in Vigna radiata under Abiotic Stresses

    Azeem, Farrukh / Ijaz, Usman / Ali, Muhammad Amjad / Hussain, Sabir / Zubair, Muhammad / Manzoor, Hamid / Abid, Muhammad / Zameer, Roshan / Kim, Dong-Seon / Golokhvast, Kirill S. / Chung, Gyuhwa / Sun, Sangmi / Nawaz, Muhammad Amjad

    Plants. 2021 Dec. 21, v. 11, no. 1

    2021  

    Abstract: Potassium (K⁺) is one of the most important cations that plays a significant role in plants and constitutes up to 10% of plants’ dry weight. Plants exhibit complex systems of transporters and channels for the distribution of K⁺ from soil to numerous ... ...

    Abstract Potassium (K⁺) is one of the most important cations that plays a significant role in plants and constitutes up to 10% of plants’ dry weight. Plants exhibit complex systems of transporters and channels for the distribution of K⁺ from soil to numerous parts of plants. In this study, we have identified 39 genes encoding putative K⁺ transport-related genes in Vigna radiata. Chromosomal mapping of these genes indicated an uneven distribution across eight out of 11 chromosomes. Comparative phylogenetic analysis of different plant species, i.e., V. radiata, Glycine max, Cicer arietinum, Oryza sativa, and Arabidopsis thaliana, showed their strong conservation in different plant species. Evolutionary analysis of these genes suggests that gene duplication is a major route of expansion for this family in V. radiata. Comprehensive promoter analysis identified several abiotic stresses related to cis-elements in the promoter regions of these genes, suggesting their role in abiotic stress tolerance. Our additional analyses indicated that abiotic stresses adversely affected the chlorophyll concentration, carotenoids, catalase, total soluble protein concentration, and the activities of superoxide and peroxidase in V. radiata. It also disturbs the ionic balance by decreasing the uptake of K⁺ content and increasing the uptake of Na⁺. Expression analysis from high-throughput sequencing data and quantitative real-time PCR experiments revealed that several K⁺ transport genes were expressed in different tissues (seed, flower, and pod) and in abiotic stress-responsive manners. A highly significant variation of expression was observed for VrHKT (1.1 and 1.2), VrKAT (1 and 2) VrAKT1.1, VrAKT2, VrSKOR, VrKEA5, VrTPK3, and VrKUP/HAK/KT (4, 5, and 8.1) in response to drought, heat or salinity stress. It reflected their potential roles in plant growth, development, or stress adaptations. The present study gives an in-depth understanding of K⁺ transport system genes in V. radiata and will serve as a basis for a functional analysis of these genes.
    Keywords Arabidopsis thaliana ; Cicer arietinum ; Glycine max ; Oryza sativa ; Vigna radiata ; carotenoids ; catalase ; chlorophyll ; drought ; flowers ; gene duplication ; heat ; peroxidase ; phylogeny ; plant growth ; potassium ; quantitative polymerase chain reaction ; salt stress ; soil ; stress tolerance
    Language English
    Dates of publication 2021-1221
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants11010002
    Database NAL-Catalogue (AGRICOLA)

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  9. Article: Genome-Wide Identification, Genomic Organization, and Characterization of Potassium Transport-Related Genes in Cajanus cajan and Their Role in Abiotic Stress

    Siddique, Muhammad Hussnain / Babar, Naeem Iqbal / Zameer, Roshan / Muzammil, Saima / Nahid, Nazia / Ijaz, Usman / Masroor, Ashir / Nadeem, Majid / Rashid, Muhammad Abdul Rehman / Hashem, Abeer / Azeem, Farrukh / Fathi Abd_Allah, Elsayed

    Plants. 2021 Oct. 20, v. 10, no. 11

    2021  

    Abstract: Potassium is the most important and abundant inorganic cation in plants and it can comprise up to 10% of a plant’s dry weight. Plants possess complex systems of transporters and channels for the transport of K⁺ from soil to numerous parts of plants. ... ...

    Abstract Potassium is the most important and abundant inorganic cation in plants and it can comprise up to 10% of a plant’s dry weight. Plants possess complex systems of transporters and channels for the transport of K⁺ from soil to numerous parts of plants. Cajanus cajan is cultivated in different regions of the world as an economical source of carbohydrates, fiber, proteins, and fodder for animals. In the current study, 39 K⁺ transport genes were identified in C. cajan, including 25 K⁺ transporters (17 carrier-like K⁺ transporters (KUP/HAK/KTs), 2 high-affinity potassium transporters (HKTs), and 6 K⁺ efflux transporters (KEAs) and 14 K⁺ channels (9 shakers and 5 tandem-pore K⁺ channels (TPKs). Chromosomal mapping indicated that these genes were randomly distributed among 10 chromosomes. A comparative phylogenetic analysis including protein sequences from Glycine max, Arabidopsis thaliana, Oryza sativa, Medicago truncatula Cicer arietinum, and C. cajan suggested vital conservation of K⁺ transport genes. Gene structure analysis showed that the intron/exon organization of K⁺ transporter and channel genes is highly conserved in a family-specific manner. In the promoter region, many cis-regulatory elements were identified related to abiotic stress, suggesting their role in abiotic stress response. Abiotic stresses (salt, heat, and drought) adversely affect chlorophyll, carotenoids contents, and total soluble proteins. Furthermore, the activities of catalase, superoxide, and peroxidase were altered in C. cajan leaves under applied stresses. Expression analysis (RNA-seq data and quantitative real-time PCR) revealed that several K⁺ transport genes were expressed in abiotic stress-responsive manners. The present study provides an in-depth understanding of K⁺ transport system genes in C. cajan and serves as a basis for further characterization of these genes.
    Keywords Arabidopsis thaliana ; Cajanus cajan ; Cicer arietinum ; Glycine max ; Medicago truncatula ; Oryza sativa ; abiotic stress ; carotenoids ; catalase ; cations ; chlorophyll ; drought ; exons ; forage ; heat ; introns ; peroxidase ; phylogeny ; potassium ; promoter regions ; quantitative polymerase chain reaction ; sequence analysis ; soil ; stress response
    Language English
    Dates of publication 2021-1020
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants10112238
    Database NAL-Catalogue (AGRICOLA)

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