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Article ; Online: NOD-like Receptor Signaling Pathway in Gastrointestinal Inflammatory Diseases and Cancers.

Zhou, Yujie / Yu, Songyan / Zhang, Wenyong

International journal of molecular sciences

2023 Volume 24, Issue 19

Abstract: Nucleotide-binding and oligomerization domain (NOD)-like receptors (NLRs) are intracellular proteins with a central role in innate and adaptive immunity. As a member of pattern recognition receptors (PRRs), NLRs sense specific pathogen-associated ... ...

Abstract	Nucleotide-binding and oligomerization domain (NOD)-like receptors (NLRs) are intracellular proteins with a central role in innate and adaptive immunity. As a member of pattern recognition receptors (PRRs), NLRs sense specific pathogen-associated molecular patterns, trigger numerous signaling pathways and lead to the secretion of various cytokines. In recent years, cumulative studies have revealed the significant impacts of NLRs in gastrointestinal (GI) inflammatory diseases and cancers. Deciphering the role and molecular mechanism of the NLR signaling pathways may provide new opportunities for the development of therapeutic strategies related to GI inflammatory diseases and GI cancers. This review presents the structures and signaling pathways of NLRs, summarizes the recent advances regarding NLR signaling in GI inflammatory diseases and GI cancers and describes comprehensive therapeutic strategies based on this signaling pathway.
MeSH term(s)	Humans ; Immunity, Innate ; Neoplasms ; Signal Transduction ; Receptors, Pattern Recognition ; Gastrointestinal Diseases ; NLR Proteins/metabolism
Chemical Substances	Receptors, Pattern Recognition ; NLR Proteins
Language	English
Publishing date	2023-09-25
Publishing country	Switzerland
Document type	Journal Article ; Review
ZDB-ID	2019364-6
ISSN	1422-0067 ; 1422-0067 ; 1661-6596
ISSN (online)	1422-0067
ISSN	1422-0067 ; 1661-6596
DOI	10.3390/ijms241914511
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Article ; Online: On a framework of data assimilation for hyperparameter estimation of spiking neuronal networks.

Zhang, Wenyong / Chen, Boyu / Feng, Jianfeng / Lu, Wenlian

Neural networks : the official journal of the International Neural Network Society

2023 Volume 171, Page(s) 293–307

Abstract: When handling real-world data modeled by a complex network dynamical system, the number of the parameters is often much more than the size of the data. Therefore, in many cases, it is impossible to estimate these parameters and the exact value of each ... ...

Abstract	When handling real-world data modeled by a complex network dynamical system, the number of the parameters is often much more than the size of the data. Therefore, in many cases, it is impossible to estimate these parameters and the exact value of each parameter is frequently less interesting than the distribution of the parameters. In this paper, we aim to estimate the distribution of the parameters in the mesoscopic neuronal network model from the macroscopic experimental data, for example, the BOLD (blood oxygen level dependent) signal. Herein, we assume that the parameters of the neurons and synapses are inhomogeneous but independently and identically distributed from certain distributions with unknown hyperparameters. Thus, we estimate these hyperparameters of the distributions of the parameters, instead of estimating the parameters themselves. We formulate this problem under the framework of data assimilation and hierarchical Bayesian method and present an efficient method named Hierarchical Data Assimilation (HDA) to conduct the statistical inference on the neuronal network model with the BOLD signal data simulated by the hemodynamic model. We consider the Leaky Integral-Fire (LIF) neuronal networks with four synapses and show that the proposed algorithm can estimate the BOLD signals and the hyperparameters with high preciseness. In addition, we discuss the influence on the performance of the algorithm configuration and the LIF network model setup.
MeSH term(s)	Bayes Theorem ; Neurons/physiology ; Algorithms
Language	English
Publishing date	2023-11-11
Publishing country	United States
Document type	Journal Article
ZDB-ID	740542-x
ISSN	1879-2782 ; 0893-6080
ISSN (online)	1879-2782
ISSN	0893-6080
DOI	10.1016/j.neunet.2023.11.016
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Article: [Early Efficacy Observation of Pomalidomide-based Regimen in the Treatment of High-risk Multiple Myeloma].

Li, Cong-Chi / Zhang, Wen-Yong / Zhang, Rui-Juan

Zhongguo shi yan xue ye xue za zhi

2023 Volume 31, Issue 5, Page(s) 1432–1436

Abstract: Objective: To investigate the efficacy and safety of pomalidomide based regimen in the treatment of high-risk multiple myeloma (MM).: Methods: Clinical data of 27 high-risk MM patients treated in Shanxi Bethune Hospital from January 2021 to December ... ...

Abstract	Objective: To investigate the efficacy and safety of pomalidomide based regimen in the treatment of high-risk multiple myeloma (MM). Methods: Clinical data of 27 high-risk MM patients treated in Shanxi Bethune Hospital from January 2021 to December 2022 were retrospectively analyzed. All patients were treated with pomadomide based regimen for at least 2 consecutive cycles, and the early therapeutic effect and safety were observed. Results: Overall remission rate (ORR) was 63.0%(17/27 cases) and deep remission rate was 22.2%(6/27 cases) after 2 cycles of treatment; ORR was 90.5%(19/21 cases) and deep remission rate was 66.7%(14/21 cases) after 4 cycles of treatment. Both ORR and deep remission rate were significantly higher after 4 cycles of treatment than 2 cycles ( Conclusion: The pomalidomide-based treatment regimen has good early curative effect on the newly diagnosed and relapsed refractory high-risk MM, and also benefits to the high-risk cytogenetic MM, or MM with renal impairment. Therefore, this treatment regimen showed a good safety, and the long-term curative effect needs to be further assessed by more clinical data.
Language	Chinese
Publishing date	2023-10-19
Publishing country	China
Document type	English Abstract ; Journal Article
ZDB-ID	2404306-0
ISSN	1009-2137
ISSN	1009-2137
DOI	10.19746/j.cnki.issn.1009-2137.2023.05.028
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Article ; Online: CircPRDM5 inhibits the proliferation, migration, invasion, and glucose metabolism of gastric cancer cells by reducing GCNT4 expression in a miR-485-3p-dependent manner.

Lan, Zhang-Zhang / Sun, Feng-Hua / Chen, Chuan / Niu, Li / Shi, Jing-Dong / Zhang, Wen-Yong

The Kaohsiung journal of medical sciences

2024 Volume 40, Issue 3, Page(s) 231–243

Abstract: Circular RNA (circRNA) plays a key part in the pathological process of gastric cancer (GC). The study is organized to analyze the function of circPRDM5 in GC cell tumor properties. Expression levels of circPRDM5, miR-485-3p, glucosaminyl (N-acetyl) ... ...

Abstract	Circular RNA (circRNA) plays a key part in the pathological process of gastric cancer (GC). The study is organized to analyze the function of circPRDM5 in GC cell tumor properties. Expression levels of circPRDM5, miR-485-3p, glucosaminyl (N-acetyl) transferase 4 (GCNT4), ki67, E-cadherin, N-cadherin, and hexokinase 2 (HK2) were analyzed by quantitative real-time polymerase chain reaction (PCR), Western blotting or immunohistochemistry assay. Cell proliferation was assessed by cell colony formation assay and 5-ethynyl-2'-deoxyuridine assay. Cell migration and invasion were investigated by transwell assay. Glycolysis was evaluated by the Seahorse XF Glycolysis Stress Test Kit. Dual-luciferase reporter assay and RNA pull-down assay were performed to identify the associations among circPRDM5, miR-485-3p, and GCNT4. Xenograft mouse model assay was conducted to determine the effects of circPRDM5 on tumor formation in vivo. CircPRDM5 and GCNT4 expression were downregulated, while miR-485-3p expression was upregulated in GC tissues and cells when compared with paracancerous tissues or human gastric epithelial cells. CircPRDM5 overexpression inhibited proliferation, migration, invasion, and glucose metabolism of GC cells; however, circPRDM5 depletion had the opposite effects. CircPRDM5 repressed tumor properties of GC cells in vivo. MiR-485-3p restoration relieved circPRDM5-induced effects in GC cells. GCNT4 overexpression remitted the promoting effects of miR-485-3p mimics on GC cell malignancy. CircPRDM5 acted as a sponge for miR-485-3p, and GCNT4 was identified as a target gene of miR-485-3p. Moreover, circPRDM5 regulated GCNT4 expression by interacting with miR-485-3p.CircPRDM5 acted as a miR-485-3p sponge to inhibit GC progression by increasing GCNT4 expression, proving a potential target for GC therapy.
MeSH term(s)	Humans ; Animals ; Mice ; Stomach Neoplasms/genetics ; Glycolysis/genetics ; Cell Proliferation/genetics ; Glucose ; MicroRNAs/genetics ; Cell Line, Tumor
Chemical Substances	Glucose (IY9XDZ35W2) ; MicroRNAs ; MIRN485 microRNA, human
Language	English
Publishing date	2024-01-05
Publishing country	China (Republic : 1949- )
Document type	Journal Article
ZDB-ID	639302-0
ISSN	2410-8650 ; 0257-5655
ISSN (online)	2410-8650
ISSN	0257-5655
DOI	10.1002/kjm2.12799
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Article ; Online: Rapid, sensitive, and high-throughput quantification of broad serological ceramides by using isotope dilution liquid chromatography-negative ion electrospray tandem mass spectrometry

Chen, Shuailong / Li, Xuan / Liu, Shijia / Zhao, Longshan / Zhang, Wenyong / Xiong, Zhili / Luan, Hemi

Anal Bioanal Chem. 2023 Feb., v. 415, no. 5 p.801-808

2023

Abstract: Ceramides are important intermediates in the metabolism of sphingolipids. High-throughput liquid chromatography-mass spectrometry has been used extensively for monitoring the levels of serological ceramides, but is still limited by inadequate coverage or ...

Abstract	Ceramides are important intermediates in the metabolism of sphingolipids. High-throughput liquid chromatography-mass spectrometry has been used extensively for monitoring the levels of serological ceramides, but is still limited by inadequate coverage or lack of sensitivity. Herein, a rapid, sensitive, and high-throughput isotope dilution liquid chromatography-negative ion electrospray tandem mass spectrometry (IDLC-nESI-MS/MS) method was developed and verified for accurate quantification of 41 ceramides, involving ceramides with C16-20 sphingosine, dihydro-ceramide, and dehydro-ceramide. This method was validated with excellent linearity (R² > 0.99) and good recovery in the range of 90–110%. Intra- and inter-day imprecision were below 5.57% and 7.83% respectively. The improved high-throughput quantitative method developed in this study may aid in the accurate characterization of ceramides for understanding ceramide biology and application in disease diagnosis.
Keywords	ceramides ; disease diagnosis ; isotope dilution technique ; liquid chromatography ; metabolism ; quantitative analysis ; sphingosine ; tandem mass spectrometry
Language	English
Dates of publication	2023-02
Size	p. 801-808.
Publishing place	Springer Berlin Heidelberg
Document type	Article ; Online
ISSN	1618-2642
DOI	10.1007/s00216-022-04473-x
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Predictive role of blood eosinophils in adult varicella patients.

Yang, Luxuan / Zhang, Wenyong / Shen, Xiujuan / Chang, Jianguo / Liu, Meiqin

Epidemiology and infection

2022 Volume 150, Page(s) e127

Abstract: The study aimed to explore the relationship between eosinophils and the prognosis of varicella in adults. We retrospectively reviewed the medical records of patients who were hospitalised in The Fifth People's Hospital of Suzhou with a diagnosis of adult ...

Abstract	The study aimed to explore the relationship between eosinophils and the prognosis of varicella in adults. We retrospectively reviewed the medical records of patients who were hospitalised in The Fifth People's Hospital of Suzhou with a diagnosis of adult varicella during the period between 1 January 2012 and 31 December 2020. Of the 359 patients, 228 (63.51%) had eosinopenia. The proportion of patients with mild type disease was significantly lower in the eosinopenia group than that in the non-eosinopenia group (50.44%
MeSH term(s)	Adult ; Agranulocytosis ; Chickenpox/complications ; Chickenpox/epidemiology ; Eosinophils ; Humans ; Leukocyte Count ; Retrospective Studies
Language	English
Publishing date	2022-06-21
Publishing country	England
Document type	Journal Article
ZDB-ID	632982-2
ISSN	1469-4409 ; 0950-2688
ISSN (online)	1469-4409
ISSN	0950-2688
DOI	10.1017/S095026882200111X
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Article ; Online: Unraveling the differential perturbations of species-level functional profiling of gut microbiota among phases of methamphetamine-induced conditioned place preference.

Wang, Yinan / Guo, Zhonghao / Li, Jing / Sui, Fang / Dai, Wenkui / Zhang, Wenyong / Du, Hui

Progress in neuro-psychopharmacology & biological psychiatry

2023 Volume 127, Page(s) 110828

Abstract: The gut microbiome plays a significant role in methamphetamine addiction. Previous studies using short-read amplicon sequencing have described alterations in microbiota at the genus level and predicted function, in which taxonomic resolution is ... ...

Abstract	The gut microbiome plays a significant role in methamphetamine addiction. Previous studies using short-read amplicon sequencing have described alterations in microbiota at the genus level and predicted function, in which taxonomic resolution is insufficient for accurate functional measurements. To address this limitation, we employed metagenome sequencing to intuitively associate species to functions of gut microbiota in methamphetamine-induced conditioned place preference. We observed differential perturbations of species-level functional profiling of the gut microbiota across phases of METH-induced CPP, with alterations in SCFA metabolism and bacterial motility at the acquisition phase and substance dependence-alcoholism pathway and amino acid metabolism at the extinction phase. Our findings suggest that reduced beneficial bacteria, i.e., Lactobacillus reuteri, contributed to the alteration of SCFA metabolism, while the increased abundance of Akkermansia muciniphila during the extinction phase may be associated with altered phenylalanine, tyrosine, and tryptophan metabolism and substance dependence pathway. Our study further supports the association between specific microbial taxa and METH-induced rewarding.
MeSH term(s)	Methamphetamine/pharmacology ; Central Nervous System Stimulants/pharmacology ; Gastrointestinal Microbiome ; Conditioning, Classical ; Reward
Chemical Substances	Methamphetamine (44RAL3456C) ; Central Nervous System Stimulants
Language	English
Publishing date	2023-07-17
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	781181-0
ISSN	1878-4216 ; 0278-5846
ISSN (online)	1878-4216
ISSN	0278-5846
DOI	10.1016/j.pnpbp.2023.110828
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Book ; Online: On a framework of data assimilation for neuronal networks

Zhang, Wenyong / Chen, Boyu / Feng, Jianfeng / Lu, Wenlian

2022

Abstract: When handling real-world data modeled by a complex network dynamical system, the number of the parameters is always even much more than the size of the data. Therefore, in many cases, it is impossible to estimate these parameters and however, the exact ... ...

Abstract	When handling real-world data modeled by a complex network dynamical system, the number of the parameters is always even much more than the size of the data. Therefore, in many cases, it is impossible to estimate these parameters and however, the exact value of each parameter is frequently less interesting than the distribution of the parameters may contain important information towards understanding the system and data. In this paper, we propose this question arising by employing a data assimilation approach to estimate the distribution of the parameters in the leakage-integrate-fire (LIF) neuronal network model from the experimental data, for example, the blood-oxygen-level-dependent (BOLD) signal. Herein, we assume that the parameters of the neurons and synapses are inhomogeneous but independently identical distributed following certain distribution with unknown hyperparameters. Thus, we estimate these hyperparameters of the distributions of the parameters, instead of estimating the parameters themselves. We formulate this problem under the framework of data assimilation and hierarchical Bayesian method, and present an efficient method named Hierarchical Data Assimilation (HDA) to conduct the statistical inference on the neuronal network model with the BOLD signal data simulated by the hemodynamic model. We consider the LIF neuronal networks with four synapses and show that the proposed algorithm can estimate the BOLD signals and the hyperparameters with good preciseness. In addition, we discuss the influence on the performance of the algorithm configuration and the LIF network model setup.
Keywords	Mathematics - Dynamical Systems ; Quantitative Biology - Neurons and Cognition
Subject code	612
Publishing date	2022-06-06
Publishing country	us
Document type	Book ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article: Spatiotemporal changes of ecosystem health and their driving mechanisms in alpine regions on the northeastern Tibetan Plateau

Zou, Songbing / Qian, Jikun / Ma, Xuanlong / Tu, Zhenyu / Zhang, Wenyong / Xu, Baorong / Liang, Yu

Ecological indicators. 2022 Aug. 28,

2022

Abstract: Ecosystem health plays a vital role in the development of regional ecological environment. Gannan Plateau, an important water conservation area in the upper reaches of the Yellow River, is located at the northeastern margin of the Qinghai-Tibet Plateau. ... ...

Abstract	Ecosystem health plays a vital role in the development of regional ecological environment. Gannan Plateau, an important water conservation area in the upper reaches of the Yellow River, is located at the northeastern margin of the Qinghai-Tibet Plateau. Due to the importance of the region, understanding the spatiotemporal patterns of the ecosystem health within this region is particularly critical. Previous studies on regional ecosystem health assessment mainly focused on single ecosystem type such as wetland, forest, and grassland, while there are relatively few studies that comprehensively assessed ecosystem health at high-spatial resolution in Gannan alpine areas. In this study, 11 counties and cities in Gannan Tibetan and Linxia Hui Autonomous Prefecture of the Gansu Province, China were used as the study area. We evaluated the ecosystem health of 154 township units from 2000 to 2020 with methods of Pressure-State-Response model (PSR) and Analytic Hierarchy Process (AHP), using a combination of satellite remote sensing data, social statistics data, meteorological data, and other geospatial data sources. The results showed that overall ecosystems in the southwestern part of the study area exhibited healthier condition than those located in the northeastern part, which is mainly due to the combination of the natural environment and the intensity of human activities in different regions. Over the past 20 years, due to the active implementation of relevant ecological protection and restoration policies by various regional governments and the improvement of the natural environment, the average ecosystem health status of Gannan Plateau has increased by 15.04%, showing an improving trend in varying degrees or being stable, no declining trend was observed except for a small town. Our results implied that management should take different measures according to the differences of regional ecosystem health level, also pay more attention to areas where the ecosystem health status has not improved.
Keywords	conservation areas ; ecosystems ; environmental health ; forests ; grasslands ; health effects assessments ; health status ; humans ; meteorological data ; models ; satellites ; spatial data ; statistics ; water conservation ; wetlands ; China ; Yellow River
Language	English
Dates of publication	2022-0828
Publishing place	Elsevier Ltd
Document type	Article
Note	Pre-press version
ZDB-ID	2036774-0
ISSN	1872-7034 ; 1470-160X
ISSN (online)	1872-7034
ISSN	1470-160X
DOI	10.1016/j.ecolind.2022.109396
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Article ; Online: Fine Characterization of the Macromolecular Structure of Huainan Coal Using XRD, FTIR, 13C-CP/MAS NMR, SEM, and AFM Techniques.

Wu, Dun / Zhang, Hui / Hu, Guangqing / Zhang, Wenyong

Molecules (Basel, Switzerland)

2020 Volume 25, Issue 11

Abstract: Research on the composition and structure of coal is the most important and complex basic research in the coal chemistry field. Various methods have been used to study the structure of coal from different perspectives. However, due to the complexity of ... ...

Abstract	Research on the composition and structure of coal is the most important and complex basic research in the coal chemistry field. Various methods have been used to study the structure of coal from different perspectives. However, due to the complexity of coal and the limitations of research methods, research on the macromolecular structure of coal still lacks systematicness. Huainan coalfield is located in eastern China and is the largest coal production and processing base in the region. In this study, conventional proximate analysis and ultimate analysis, as well as advanced instrumental analysis methods, such as Fourier transform infrared spectroscopy (FITR), X-ray diffraction (XRD), 13C-CP/MAS NMR, and other methods (SEM and AFM), were used to analyze the molecular structure of Huainan coal (HNC) and the distribution characteristics of oxygen in different oxygen-containing functional groups (OCFGs) in an in-depth manner. On the basis of SEM observation, it could be concluded that the high-resolution morphology of HNC's surface contains pores and fractures of different sizes. The loose arrangement pattern of HNC's molecular structure could be seen from 3D AFM images. The XRD patterns show that the condensation degree of HNC's aromatic ring is low, and the orientation degree of carbon network lamellae is poor. The calculated ratio of the diameter of aromatic ring lamellae to their stacking height (La/Lc = 1.05) and the effective stacking number of aromatic nuclei (Nave = 7.3) show that the molecular space structure of HNC is a cube formed of seven stacked aromatic lamellae. The FTIR spectra fitting results reveal that the aliphatic chains in HNC's molecular structure are mainly methyne and methylene. Oxygen is mainly -O-, followed by -C=O, and contains a small amount of -OH, the ratio of which is about 8:1:2. The molar fraction of binding elements has the approximate molecular structure C100H76O9N of organic matter in HNC. The results of the 13C NMR experiments show that the form of aromatic carbon atoms in HNC's structure (the average structural size X_b of aromatic nucleus = 0.16) is mainly naphthalene with a condensation degree of 2, and the rest are aromatic rings composed of benzene rings and heteroatoms. In addition, HNC is relatively rich in ≡CH and -CH2- structures.
MeSH term(s)	Carbon-13 Magnetic Resonance Spectroscopy/methods ; Coal/analysis ; Microscopy, Atomic Force/methods ; Microscopy, Electron, Scanning/methods ; Molecular Structure ; Spectroscopy, Fourier Transform Infrared/methods ; X-Ray Diffraction/methods
Chemical Substances	Coal
Language	English
Publishing date	2020-06-08
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	1413402-0
ISSN	1420-3049 ; 1431-5165 ; 1420-3049
ISSN (online)	1420-3049
ISSN	1431-5165 ; 1420-3049
DOI	10.3390/molecules25112661
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